Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06- 15] 1,819 sequences; 35,034,269 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq866 84.2 2e-11 >seq866 Length=7889 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/218 (69%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||| | ||| ||||| || |||||||| || ||| Sbjct 2643 CCACCGCGAAGACGGAGAACCAAGTGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGAG 2584 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || || || || |||||| |||||| ||| ||||| || ||||| Sbjct 2583 AGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGAGGA 2524 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| | || | || | | || | || || | | ||| || Sbjct 2523 ATGCCCTCCTTGTCC-TGAATCTTGGACTTGACGTTGTCGATGGTATCAGAAGACTCGAC 2465 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGA 139754 ||||| ||| | ||||||||||| | || || |||| Sbjct 2464 CTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGA 2427 Score = 82.4 bits (90), Expect = 8e-11 Identities = 132/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| ||||||| |||||||| || || ||||| || ||| | |||| ||| || Sbjct 2340 AACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTC 2281 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 |||||||| ||||| | || ||||| ||||||||||| || ||||| || ||||| | Sbjct 2280 AAGCTGTTTGCCAGCGAAAATGAGACGCTGCTGATCGGGGGGAATGCCCTCCTTGTC-TT 2222 Query 139675 GATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || | || | || | | || | || |||| | ||| ||||| | || | |||| Sbjct 2221 GAATCTTGGACTTGACGTTGTCGATGGTATCGGATGACTCGACCTCGAGAGTGATGGTCT 2162 Query 139734 TGCCGGT 139740 ||||||| Sbjct 2161 TGCCGGT 2155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496052720744800