Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06- 15] 1,819 sequences; 35,034,269 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1170 178 2e-39 >seq1170 Length=97779 Score = 178 bits (196), Expect = 2e-39 Identities = 310/446 (70%), Gaps = 4/446 (1%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || || | ||| ||||| | || || |||||||| || Sbjct 59672 CAGGGTGGCAACAAGCGTCCTGGTGCCTTCGCCATCTACCTTGAGCCCTGGCACGCCGAT 59731 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || || || || || ||||||| ||| ||| || |||| || ||| | ||| Sbjct 59732 GTCTTCGAGTTCATGGACTTGCGCAAGAACCACGGCAAGGAGGAGGTCCGTGCCCGTGAC 59791 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 | || || |||||| | || ||| ||||||||||| | ||| | | | | | Sbjct 59792 CTTTTCCTCGCCCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAGAAGAACGCCGAA 59851 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| ||| ||||||||| || || ||||| ||| | || |||| ||||| |||||| Sbjct 59852 TGGACCCTCATGTGCCCCAACGAGTGCCCCGGCCTGGCTGACTGCTACGGCGAGGAGTTT 59911 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGATGCACG 97174 |||||| |||| ||||||| |||||| | || |||| | || | || | Sbjct 59912 GAGGCCTTGTACGAAAAGTACGAGCGCGAGGGCAAGGGTCGCAAGACCA-TCAAGGC-CC 59969 Query 97175 AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233 |||| || ||| | |||||| | ||||||| ||||| || | || | ||| || | Sbjct 59970 AGAAGCTTTGGTACGCCATCCTCGAGGCTCAGACTGAGACCGGCAACCCCTTCATGCTTT 60029 Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293 |||||||| ||| ||| ||||| ||||||||| || | || |||||| |||||| Sbjct 60030 ACAAGGATGCCGCGAACCGCAAGAGCAACCAAAAGAACCTCGGAACCATCCGCAGCTCCA 60089 Query 97294 ATCTGTGCACGGAAATTGTAGAGTAC 97319 | || ||||| || ||| | |||||| Sbjct 60090 ACCTCTGCACTGAGATTATTGAGTAC 60115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741042350166440