Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06-
15] 1,819 sequences; 35,034,269 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq1170 178 2e-39
>seq1170
Length=97779
Score = 178 bits (196), Expect = 2e-39
Identities = 310/446 (70%), Gaps = 4/446 (1%)
Strand=Plus/Plus
Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935
||||| ||||| || || || || || | ||| ||||| | || || |||||||| ||
Sbjct 59672 CAGGGTGGCAACAAGCGTCCTGGTGCCTTCGCCATCTACCTTGAGCCCTGGCACGCCGAT 59731
Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995
|| || || || || || ||||||| ||| ||| || |||| || ||| | |||
Sbjct 59732 GTCTTCGAGTTCATGGACTTGCGCAAGAACCACGGCAAGGAGGAGGTCCGTGCCCGTGAC 59791
Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055
| || || |||||| | || ||| ||||||||||| | ||| | | | | |
Sbjct 59792 CTTTTCCTCGCCCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAGAAGAACGCCGAA 59851
Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115
|||| ||| ||||||||| || || ||||| ||| | || |||| ||||| ||||||
Sbjct 59852 TGGACCCTCATGTGCCCCAACGAGTGCCCCGGCCTGGCTGACTGCTACGGCGAGGAGTTT 59911
Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGATGCACG 97174
|||||| |||| ||||||| |||||| | || |||| | || | || |
Sbjct 59912 GAGGCCTTGTACGAAAAGTACGAGCGCGAGGGCAAGGGTCGCAAGACCA-TCAAGGC-CC 59969
Query 97175 AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233
|||| || ||| | |||||| | ||||||| ||||| || | || | ||| || |
Sbjct 59970 AGAAGCTTTGGTACGCCATCCTCGAGGCTCAGACTGAGACCGGCAACCCCTTCATGCTTT 60029
Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293
|||||||| ||| ||| ||||| ||||||||| || | || |||||| ||||||
Sbjct 60030 ACAAGGATGCCGCGAACCGCAAGAGCAACCAAAAGAACCTCGGAACCATCCGCAGCTCCA 60089
Query 97294 ATCTGTGCACGGAAATTGTAGAGTAC 97319
| || ||||| || ||| | ||||||
Sbjct 60090 ACCTCTGCACTGAGATTATTGAGTAC 60115
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741042350166440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |