Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06-
15] 1,819 sequences; 35,034,269 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq866 100 7e-16
>seq866
Length=7889
Score = 100 bits (110), Expect = 7e-16
Identities = 133/185 (72%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || |||||||| || ||||| || || || | || || || ||||| || |||
Sbjct 2613 GTGGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGTTGCTTGCCA 2554
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || | | ||| || |||||||| || || || || ||||||||||| | ||
Sbjct 2553 GCAAAGATCAAACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTG 2494
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| || || | |||||| || || ||||| || || || ||||| || || || ||
Sbjct 2493 ACGTTGTCGATGGTATCAGAAGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTC 2434
Query 104543 TTTAC 104547
|| ||
Sbjct 2433 TTGAC 2429
Score = 98.7 bits (108), Expect = 2e-15
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| || ||||| | || ||||| ||||| || || ||||| || || | ||| |||
Sbjct 3084 AGGACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCT 3025
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| | || |||||||| || || || | ||| || || ||||| || || || ||||||
Sbjct 3024 TCCAACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTATCC 2965
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
|||||||| | || || || || | || || | || ||||| | ||||| |||
Sbjct 2964 TGAATCTTAGACTTCACGTTGTCAATCGTGTCTGATGACTCGACCTCCAAGGTAATCGTC 2905
Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| ||||| | || || || || ||||||||
Sbjct 2904 TTGCCAGTCAACGTCTTCACGAAGATCTGCAT 2873
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151371565580852
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |