Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06-
15] 1,819 sequences; 35,034,269 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq1170 122 1e-22
>seq1170
Length=97779
Score = 122 bits (134), Expect = 1e-22
Identities = 422/655 (64%), Gaps = 10/655 (2%)
Strand=Plus/Minus
Query 63183 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63242
|| ||||| | | ||| || ||| | || |||| ||||| || ||||| || |||
Sbjct 59868 GGGCACATGAGGGTCCATTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATC 59809
Query 63243 CAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63302
|| || || | || || || | || | ||||| || || ||||| |
Sbjct 59808 CAGAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAG 59749
Query 63303 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63362
|| | |||| | | | ||| | ||||| || || | ||| ||||| | | |||||
Sbjct 59748 TCCATGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCACCAGGA 59689
Query 63363 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63422
|| ||||| || ||||| || | ||| | ||| ||||| || | || | | ||| |||
Sbjct 59688 CGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGA 59629
Query 63423 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTA 63482
|| | ||||| || | || ||||| |||| || ||| ||| ||||||| |||
Sbjct 59628 ATGACGCCGTTAGAGGTGCCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCACGGATACGG 59569
Query 63483 CTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63541
| | | | || || || || || ||||| || ||||| | ||||| || | ||
Sbjct 59568 -TGAGCGTTGAGGCCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGT 59510
Query 63542 GTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTG 63601
||| ||||||||||| ||| || || |||||| | || || || ||||| ||
Sbjct 59509 GTCGTAGATACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTG 59450
Query 63602 GTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 63661
| || || || ||||| || | || || || ||||| || || | || ||
Sbjct 59449 GCACTGAGGGGTACCGGCATTGAAAAGTGTGGGGGAGGCGTGTGTGAAGAACTTGCTGGA 59390
Query 63662 AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTG 63717
| || ||||| ||||| || | || | ||| || | || || ||||
Sbjct 59389 CATGAGGTTGTAGGTCTCGATGACGCGCTCAACATCGTCGCCCCAG----ATACCGACTG 59334
Query 63718 CGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGT 63777
|||||||||| | ||||||||| ||||| || | |||||| || | || | || ||
Sbjct 59333 CGACACGCATGATCATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCGAGCTTGAGCAGGT 59274
Query 63778 AGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 63832
| ||| | |||| ||| || || || || || | ||| ||||| || |||||
Sbjct 59273 ATGATCTCTCCAGAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTA 59219
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622933035738040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |