Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06- 15] 1,819 sequences; 35,034,269 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1170 122 1e-22 >seq1170 Length=97779 Score = 122 bits (134), Expect = 1e-22 Identities = 422/655 (64%), Gaps = 10/655 (2%) Strand=Plus/Minus Query 63183 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63242 || ||||| | | ||| || ||| | || |||| ||||| || ||||| || ||| Sbjct 59868 GGGCACATGAGGGTCCATTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATC 59809 Query 63243 CAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63302 || || || | || || || | || | ||||| || || ||||| | Sbjct 59808 CAGAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAG 59749 Query 63303 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63362 || | |||| | | | ||| | ||||| || || | ||| ||||| | | ||||| Sbjct 59748 TCCATGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCACCAGGA 59689 Query 63363 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63422 || ||||| || ||||| || | ||| | ||| ||||| || | || | | ||| ||| Sbjct 59688 CGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGA 59629 Query 63423 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTA 63482 || | ||||| || | || ||||| |||| || ||| ||| ||||||| ||| Sbjct 59628 ATGACGCCGTTAGAGGTGCCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCACGGATACGG 59569 Query 63483 CTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63541 | | | | || || || || || ||||| || ||||| | ||||| || | || Sbjct 59568 -TGAGCGTTGAGGCCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGT 59510 Query 63542 GTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTG 63601 ||| ||||||||||| ||| || || |||||| | || || || ||||| || Sbjct 59509 GTCGTAGATACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTG 59450 Query 63602 GTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 63661 | || || || ||||| || | || || || ||||| || || | || || Sbjct 59449 GCACTGAGGGGTACCGGCATTGAAAAGTGTGGGGGAGGCGTGTGTGAAGAACTTGCTGGA 59390 Query 63662 AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTG 63717 | || ||||| ||||| || | || | ||| || | || || |||| Sbjct 59389 CATGAGGTTGTAGGTCTCGATGACGCGCTCAACATCGTCGCCCCAG----ATACCGACTG 59334 Query 63718 CGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGT 63777 |||||||||| | ||||||||| ||||| || | |||||| || | || | || || Sbjct 59333 CGACACGCATGATCATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCGAGCTTGAGCAGGT 59274 Query 63778 AGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 63832 | ||| | |||| ||| || || || || || | ||| ||||| || ||||| Sbjct 59273 ATGATCTCTCCAGAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTA 59219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622933035738040