Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06- 15] 1,819 sequences; 35,034,269 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1170 428 1e-114 >seq1170 Length=97779 Score = 428 bits (474), Expect = 1e-114 Identities = 1185/1792 (66%), Gaps = 46/1792 (3%) Strand=Plus/Plus Query 363391 TTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTA-TCAATGGTGATATTGTTGA 363449 ||||| | ||||| |||||| ||| ||||| ||| || | || | |||| || Sbjct 59246 TTCGGCTTCAAGACTCTGGAGAGATCATACCTG-CTCAAGCTCGACGGCAAGATTGCCGA 59304 Query 363450 ACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGC 363509 | |||||||| ||| | |||||||| || | |||||| || |||||||| Sbjct 59305 GAGACCGCAGCACATGATCATGCGTGTCGCAGTCGGTATCTGGGGCGACGATGTTGAGCG 59364 Query 363510 CGCGATTGAAACATATAAGCTTCTAAGT---GCTCGTGTATTCACGCACGCCACGCCAAC 363566 || || || || || || || | || || || | ||||| |||||| | || || Sbjct 59365 CGTCATCGAGACCTACAACCTCAT--GTCCAGCAAGT-TCTTCACACACGCCTCCCCCAC 59421 Query 363567 AATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAA 363626 | | | |||||| || || | | | ||| ||||||| ||||| || | | ||||| Sbjct 59422 ACTTTTCAATGCCGGTACCCCTCAGTGCCAGCTGTCTTCATGCTTCCTCGTCGACATGAA 59481 Query 363627 GGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAA 363686 ||| || ||||| |||||||||| ||||| || |||| || || | || ||||||| Sbjct 59482 GGAAGACTCCATTGAGGGTATCTACGACACCCTCAAGACCTGCGCCATGATCTCCAAGAT 59541 Query 363687 TGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGC 363744 || || || ||||| | | || || || | | ||||| || | | |||||| | Sbjct 59542 GGCTGGTGGCATTGGCCTCAACGCTC-ACCGTATCCGTGCCACTGG-CTCCTACATTGCC 59599 Query 363745 GGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCG 363804 ||||| || ||| || || | |||||||||||||||| || |||| ||||| Sbjct 59600 GGCACCAACGGCACCTCTAACGGCGTCATTCCCATGCTTCGTGTCTTCAACAACACTGCT 59659 Query 363805 AGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCT 363864 | ||||||||||||||||| ||||| || || || || || || || ||||| Sbjct 59660 CGCTACGTCGACCAGGGTGGCAACAAGCGTCCTGGTGCCTTCGCCATCTACCTTGAGCCC 59719 Query 363865 CATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTG 363924 || |||||| | || ||||| | || | || || ||| || || ||||| | Sbjct 59720 TGGCACGCCGATGTCTTCGAGTTCATGGACTTGCGCAAGAACCACGGCAAGGAGGAGGTC 59779 Query 363925 CGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAG 363984 ||||| ||||| || ||| || || ||| | | || | || |||||| | || ||| Sbjct 59780 CGTGCCCGTGACCTTTTCCTCGCCCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAG 59839 Query 363985 GCAGGTAAGA--ATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTAT 364042 | | | | | ||| | ||| | ||||| |||| || || || || | || | Sbjct 59840 --AAGAACGCCGAATGGACCCTCATGTGCCCCAACGAGTGCCCCGGCCTGGCTGACTGCT 59897 Query 364043 GGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGA 364102 || || || | || || | ||||||||||| || ||||| |||| ||| |||| Sbjct 59898 ACGGCGAGGAGTTTGAGGCCTTGTACGAAAAGTACGAGCGCGAGGGCAAGGGTCGCAAGA 59957 Query 364103 CAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACAC 364162 | || || |||||||| |||| |||||| | || | |||| |||||| || | | Sbjct 59958 CCATCAAGGCCCAGAAGCTTTGGTACGCCATCCTCGAGGCTCAGACTGAGACCGGCAACC 60017 Query 364163 CCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAA 364222 ||| ||| | ||||| ||| | ||||||||| |||||| || |||| || || | Sbjct 60018 CCTTCATGCTTTACAAGGATGCCGCGAACCGCAAGAGCAACCAAAAGAACCTCGGAACCA 60077 Query 364223 TTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCC 364281 || |||| |||||| || || ||||||||||| ||| ||| ||||| ||| || Sbjct 60078 -TCCGCAGCTCCAACCTCTGCACTGAGATTATTGAGTACTGCGCCCCCGATGAGGTCGCT 60136 Query 364282 GTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT------AAAAGATGGTACTTTT 364335 || || ||| | || || | || || || | || || || || ||| || Sbjct 60137 GTCTGCAACTTGGCCTCTCTTGCCCTGCCTACCTTCGTTGACTACAATGAGGGTGTTTAC 60196 Query 364336 GACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATC 364395 || |||| | ||| | || || || | | | | |||| || ||||| | || Sbjct 60197 GATTTCCAGAAGCTTCACGAGGTCACTCAGGTCGTTGTTCGCAACCTGAACAAGATCATT 60256 Query 364396 GACAAGAATTATTATCCAATTCCTGAAGC-CG----AGCGTTCTAATATGCGTCATCGCC 364450 || || | || || ||||||| || || ||| || |||||||| |||| Sbjct 60257 GATGTCAACCACTACCCCGTTCCTGAGGCTCGCAACAGC-----AACATGCGTCACCGCC 60311 Query 364451 CGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTG 364510 | || ||||||||||| ||||| || ||||| | || | ||| ||| | || | Sbjct 60312 CCATCGGTCTTGGTGTCCAGGGTCTTGCTGATGCCTTCCTCGCCCTCCGCATGCCTTTCG 60371 Query 364511 ATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAA 364570 | || ||||| ||||| | ||| |||||| |||| ||||| || || || ||||| Sbjct 60372 AGTCTCCTGAGGCTCGCGATCTCAATAAGAAGATTTTTGAGACCATCTACCACGCCGCTC 60431 Query 364571 TGAC--TGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTC 364628 |||| || | ||| | | |||| | |||| | ||||| || || ||||| || Sbjct 60432 TGACCATG-TCCGT-TCAACTGGCCAGGGAGGAGGGTACCTACTCCACGTACGAGGGCTC 60489 Query 364629 CCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATG 364688 |||| | || ||||| | | |||| || | |||||||||| ||| |||| || || Sbjct 60490 CCCTATCTCCCAGGGTATCCTTCAGTACGACATGTGGAATGTCAAGCCCTCTGACCTCTG 60549 Query 364689 GAACTGGGATACGCT-ACGTTCCAACGTTAAGAAGCATGGTACTCGCAAC---TCCCTCG 364744 | ||||||| | || | | ||| | ||| |||| ||| ||||||| | || | Sbjct 60550 GGACTGGGACTCTCTGAAGGAGCAA-ATCAAGGAGCACGGTGTTCGCAACAGTTTGCTTG 60608 Query 364745 TTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCG 364804 || || |||||||| || || || ||| | |||||| | || |||||||||||||||| Sbjct 60609 TT---GCTCCCATGCCTACTGCCTCCACTTCCCAGATCTTGGGCAACAACGAGTGCTTCG 60665 Query 364805 AACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTA 364864 | || | || ||| | || ||||| ||||| |||| || || | ||| || | Sbjct 60666 AGCCCTACACCTCCAACATCTACCAGCGCCGTGTTCTCGCCGGCGAGTTCCAGGTTGTCA 60725 Query 364865 ATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACT 364924 | | || | ||||||||| |||| || ||||| || |||||||||| Sbjct 60726 ACCCCTGGCTGCTGAAGGATCTTGTCGACATGGGCTTGTGGTCCGATGCCATGAAGAACC 60785 Query 364925 ATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGC 364984 ||||||||||| || ||||| || |||||||| || | || | || | ||| Sbjct 60786 GTATCATCGCCGAGAACGGTTCCGTTCAGAACATCCCTAACATCCCCGCCGAGGTCAAGG 60845 Query 364985 CTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATC 365044 || | ||||| ||||| |||||||| ||| ||| || | || | ||||| ||||||| Sbjct 60846 CTCTGTACAAGACCGTCTGGGAAATCTCCCAGCGCACCGTTGTTCAGATGGCTGCCGATC 60905 Query 365045 GCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCG 365104 | ||||| || || ||| |||||| | ||| | ||||| | || || | Sbjct 60906 GTGGTGCCTTCATTGACCAGTCCCAGTCCCTCAACATCCACATGAAGGACCCGACAATGG 60965 Query 365105 CCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 |||| | || |||||| ||| || ||||| ||||| ||||| || Sbjct 60966 GCAAGATCACCAGCATGCACTTCGCTGGCTGGAAGCTTGGTCTCAAGACGGG 61017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303323224122458