Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06-
15] 1,819 sequences; 35,034,269 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq1170 428 1e-114
>seq1170
Length=97779
Score = 428 bits (474), Expect = 1e-114
Identities = 1185/1792 (66%), Gaps = 46/1792 (3%)
Strand=Plus/Plus
Query 363391 TTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTA-TCAATGGTGATATTGTTGA 363449
||||| | ||||| |||||| ||| ||||| ||| || | || | |||| ||
Sbjct 59246 TTCGGCTTCAAGACTCTGGAGAGATCATACCTG-CTCAAGCTCGACGGCAAGATTGCCGA 59304
Query 363450 ACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGC 363509
| |||||||| ||| | |||||||| || | |||||| || ||||||||
Sbjct 59305 GAGACCGCAGCACATGATCATGCGTGTCGCAGTCGGTATCTGGGGCGACGATGTTGAGCG 59364
Query 363510 CGCGATTGAAACATATAAGCTTCTAAGT---GCTCGTGTATTCACGCACGCCACGCCAAC 363566
|| || || || || || || | || || || | ||||| |||||| | || ||
Sbjct 59365 CGTCATCGAGACCTACAACCTCAT--GTCCAGCAAGT-TCTTCACACACGCCTCCCCCAC 59421
Query 363567 AATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAA 363626
| | | |||||| || || | | | ||| ||||||| ||||| || | | |||||
Sbjct 59422 ACTTTTCAATGCCGGTACCCCTCAGTGCCAGCTGTCTTCATGCTTCCTCGTCGACATGAA 59481
Query 363627 GGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAA 363686
||| || ||||| |||||||||| ||||| || |||| || || | || |||||||
Sbjct 59482 GGAAGACTCCATTGAGGGTATCTACGACACCCTCAAGACCTGCGCCATGATCTCCAAGAT 59541
Query 363687 TGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGC 363744
|| || || ||||| | | || || || | | ||||| || | | |||||| |
Sbjct 59542 GGCTGGTGGCATTGGCCTCAACGCTC-ACCGTATCCGTGCCACTGG-CTCCTACATTGCC 59599
Query 363745 GGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCG 363804
||||| || ||| || || | |||||||||||||||| || |||| |||||
Sbjct 59600 GGCACCAACGGCACCTCTAACGGCGTCATTCCCATGCTTCGTGTCTTCAACAACACTGCT 59659
Query 363805 AGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCT 363864
| ||||||||||||||||| ||||| || || || || || || || |||||
Sbjct 59660 CGCTACGTCGACCAGGGTGGCAACAAGCGTCCTGGTGCCTTCGCCATCTACCTTGAGCCC 59719
Query 363865 CATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTG 363924
|| |||||| | || ||||| | || | || || ||| || || ||||| |
Sbjct 59720 TGGCACGCCGATGTCTTCGAGTTCATGGACTTGCGCAAGAACCACGGCAAGGAGGAGGTC 59779
Query 363925 CGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAG 363984
||||| ||||| || ||| || || ||| | | || | || |||||| | || |||
Sbjct 59780 CGTGCCCGTGACCTTTTCCTCGCCCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAG 59839
Query 363985 GCAGGTAAGA--ATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTAT 364042
| | | | | ||| | ||| | ||||| |||| || || || || | || |
Sbjct 59840 --AAGAACGCCGAATGGACCCTCATGTGCCCCAACGAGTGCCCCGGCCTGGCTGACTGCT 59897
Query 364043 GGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGA 364102
|| || || | || || | ||||||||||| || ||||| |||| ||| ||||
Sbjct 59898 ACGGCGAGGAGTTTGAGGCCTTGTACGAAAAGTACGAGCGCGAGGGCAAGGGTCGCAAGA 59957
Query 364103 CAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACAC 364162
| || || |||||||| |||| |||||| | || | |||| |||||| || | |
Sbjct 59958 CCATCAAGGCCCAGAAGCTTTGGTACGCCATCCTCGAGGCTCAGACTGAGACCGGCAACC 60017
Query 364163 CCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAA 364222
||| ||| | ||||| ||| | ||||||||| |||||| || |||| || || |
Sbjct 60018 CCTTCATGCTTTACAAGGATGCCGCGAACCGCAAGAGCAACCAAAAGAACCTCGGAACCA 60077
Query 364223 TTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCC 364281
|| |||| |||||| || || ||||||||||| ||| ||| ||||| ||| ||
Sbjct 60078 -TCCGCAGCTCCAACCTCTGCACTGAGATTATTGAGTACTGCGCCCCCGATGAGGTCGCT 60136
Query 364282 GTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT------AAAAGATGGTACTTTT 364335
|| || ||| | || || | || || || | || || || || ||| ||
Sbjct 60137 GTCTGCAACTTGGCCTCTCTTGCCCTGCCTACCTTCGTTGACTACAATGAGGGTGTTTAC 60196
Query 364336 GACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATC 364395
|| |||| | ||| | || || || | | | | |||| || ||||| | ||
Sbjct 60197 GATTTCCAGAAGCTTCACGAGGTCACTCAGGTCGTTGTTCGCAACCTGAACAAGATCATT 60256
Query 364396 GACAAGAATTATTATCCAATTCCTGAAGC-CG----AGCGTTCTAATATGCGTCATCGCC 364450
|| || | || || ||||||| || || ||| || |||||||| ||||
Sbjct 60257 GATGTCAACCACTACCCCGTTCCTGAGGCTCGCAACAGC-----AACATGCGTCACCGCC 60311
Query 364451 CGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTG 364510
| || ||||||||||| ||||| || ||||| | || | ||| ||| | || |
Sbjct 60312 CCATCGGTCTTGGTGTCCAGGGTCTTGCTGATGCCTTCCTCGCCCTCCGCATGCCTTTCG 60371
Query 364511 ATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAA 364570
| || ||||| ||||| | ||| |||||| |||| ||||| || || || |||||
Sbjct 60372 AGTCTCCTGAGGCTCGCGATCTCAATAAGAAGATTTTTGAGACCATCTACCACGCCGCTC 60431
Query 364571 TGAC--TGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTC 364628
|||| || | ||| | | |||| | |||| | ||||| || || ||||| ||
Sbjct 60432 TGACCATG-TCCGT-TCAACTGGCCAGGGAGGAGGGTACCTACTCCACGTACGAGGGCTC 60489
Query 364629 CCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATG 364688
|||| | || ||||| | | |||| || | |||||||||| ||| |||| || ||
Sbjct 60490 CCCTATCTCCCAGGGTATCCTTCAGTACGACATGTGGAATGTCAAGCCCTCTGACCTCTG 60549
Query 364689 GAACTGGGATACGCT-ACGTTCCAACGTTAAGAAGCATGGTACTCGCAAC---TCCCTCG 364744
| ||||||| | || | | ||| | ||| |||| ||| ||||||| | || |
Sbjct 60550 GGACTGGGACTCTCTGAAGGAGCAA-ATCAAGGAGCACGGTGTTCGCAACAGTTTGCTTG 60608
Query 364745 TTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCG 364804
|| || |||||||| || || || ||| | |||||| | || ||||||||||||||||
Sbjct 60609 TT---GCTCCCATGCCTACTGCCTCCACTTCCCAGATCTTGGGCAACAACGAGTGCTTCG 60665
Query 364805 AACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTA 364864
| || | || ||| | || ||||| ||||| |||| || || | ||| || |
Sbjct 60666 AGCCCTACACCTCCAACATCTACCAGCGCCGTGTTCTCGCCGGCGAGTTCCAGGTTGTCA 60725
Query 364865 ATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACT 364924
| | || | ||||||||| |||| || ||||| || ||||||||||
Sbjct 60726 ACCCCTGGCTGCTGAAGGATCTTGTCGACATGGGCTTGTGGTCCGATGCCATGAAGAACC 60785
Query 364925 ATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGC 364984
||||||||||| || ||||| || |||||||| || | || | || | |||
Sbjct 60786 GTATCATCGCCGAGAACGGTTCCGTTCAGAACATCCCTAACATCCCCGCCGAGGTCAAGG 60845
Query 364985 CTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATC 365044
|| | ||||| ||||| |||||||| ||| ||| || | || | ||||| |||||||
Sbjct 60846 CTCTGTACAAGACCGTCTGGGAAATCTCCCAGCGCACCGTTGTTCAGATGGCTGCCGATC 60905
Query 365045 GCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCG 365104
| ||||| || || ||| |||||| | ||| | ||||| | || || |
Sbjct 60906 GTGGTGCCTTCATTGACCAGTCCCAGTCCCTCAACATCCACATGAAGGACCCGACAATGG 60965
Query 365105 CCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156
|||| | || |||||| ||| || ||||| ||||| ||||| ||
Sbjct 60966 GCAAGATCACCAGCATGCACTTCGCTGGCTGGAAGCTTGGTCTCAAGACGGG 61017
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303323224122458
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |