Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06-
15] 1,819 sequences; 35,034,269 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq866 116 3e-21
seq766 116 3e-21
seq1170 114 1e-20
>seq866
Length=7889
Score = 116 bits (128), Expect = 3e-21
Identities = 156/217 (72%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|||||||| | ||| || || || || | || |||||||| ||||||||||| |||
Sbjct 2643 CCACCGCGAAGACGGAGAACCAAGTGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGAG 2584
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| ||||| || |||||||| || |||| |||||||||||||| |||||
Sbjct 2583 AGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGAGGA 2524
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| || || ||||| | || | ||||| | |||||||
Sbjct 2523 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTATCAGAAGACTCGACC 2464
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224
|| | ||| | ||| || ||||| || || || ||||
Sbjct 2463 TCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGA 2427
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| |||| ||| || || | ||| | ||| |||||||| || |||||||| || |
Sbjct 2871 CCACCACGCAGACGGAGGACAAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAC 2812
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||||| |||||| |||||||| || ||| |||| || ||||||||||| || |||
Sbjct 2811 AACGTGCGACCGTCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGG 2752
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || || || ||| ||| ||| | | || | || || | || || |
Sbjct 2751 ATACCCTCCTTATCTTGGATCTTCGACTTAACGTTGTCAATGGTGTCTGAAGATTCAACC 2692
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|||| || | || || || || ||||| || ||||| ||||||||
Sbjct 2691 TCGAGCGTGATTGTCTTGCCAGTAAGAGTCTTCACGAAGATCTGCAT 2645
Score = 105 bits (116), Expect = 6e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
||| || || | ||| || || | ||| | ||| || ||||| || |||||||| |||||
Sbjct 3100 GCCGCCACGAAGACGGAGGACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCT 3041
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
|| |||||| || || | |||||| || ||| |||| | |||||||||||| |||||
Sbjct 3040 CAGGGTGCGACCATCTTCCAACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGG 2981
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186
||| || || || || || || ||| | | || | || || | |||||||
Sbjct 2980 GATACCCTCCTTATCCTGAATCTTAGACTTCACGTTGTCAATCGTGTCTGATGACTCGAC 2921
Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | ||||| || || || || | || || ||||| ||||||||
Sbjct 2920 CTCCAAGGTAATCGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 2873
>seq766
Length=50960
Score = 116 bits (128), Expect = 3e-21
Identities = 135/182 (74%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104
|||| || |||||||| ||| | |||||| |||||| ||||||||||| ||| |||
Sbjct 295 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGA 236
Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164
| || ||||||||||| || ||||| || || ||||| ||| || ||||| | |
Sbjct 235 TCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 176
Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224
| | || |||| |||||||| || | ||||| ||| ||||| || || || || ||||
Sbjct 175 CGATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 116
Query 131225 AA 131226
||
Sbjct 115 AA 114
>seq1170
Length=97779
Score = 114 bits (126), Expect = 1e-20
Identities = 945/1512 (63%), Gaps = 47/1512 (3%)
Strand=Plus/Minus
Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117
||||| ||||| ||||||||||| | ||||| ||| || | ||| || ||| ||||
Sbjct 60726 TTGACAACCTGGAACTCGCCGGCGAGAACACGGCGCTGGTAGATGTTGGAGGTGTAGGGC 60667
Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177
|| || ||||||| ||||||| ||| || | || | || || |||||| || ||
Sbjct 60666 TCGAAGCACTCGTTGTTGCCCAAGATCTGGGAAGTGGAGGCAGTAGGCATGGGAGCAACA 60607
Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237
| || ||||| | ||||||| |||||| | ||||| || | |||| |||||
Sbjct 60606 AGCAAACTGTTGCGAACACCGTGCTCCTTGATTTGCTCCTTCAGAGAGTCCCAGTCCCAG 60547
Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297
|| || ||| | || | ||||||||||||||| | || |||| | | ||| |
Sbjct 60546 AGGTCAGAGGGCTTGACATTCCACATGTCGTACTGAAGGATACCCTGGGAGATAGGGGAG 60487
Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCT--CCAGAG 145355
|| | | | ||| | ||| |||| || | ||| | | |||||
Sbjct 60486 CCCTCGTACGTGGAGTAGGTACCCTCCTCCCTGGCCAGTT--GAACGGACATGGTCAGAG 60429
Query 145356 CGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATC----GCTTCATCGCTC 145411
|| || || || ||||| ||| | | | ||||| ||| || ||| |
Sbjct 60428 CGGCGTGGTAGATGGTCTCAAAAATCTTCTTATTGAG----ATCGCGAGCCTCAGGAGAC 60373
Query 145412 TCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATG 145471
||| | |||||||| || | || ||||| || || ||||| | || | ||||||
Sbjct 60372 TCGAAAGGCATGCGGAGGGCGAGGAAGGCATCAGCAAGACCCTGGACACCAAGACCGATG 60313
Query 145472 GGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATA 145531
|| || || ||||||||| | | ||| | || || | || || ||
Sbjct 60312 GGGCGGTGACGCATGTTGCTGTTGCGAGCCTCAGGAACGGGGTAGTGGTTGACATCAATG 60253
Query 145532 ATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTC--AA 145589
|| || |||| ||| || || || |||| || | | | | ||| | || || ||
Sbjct 60252 ATCTTGTTCAGGTTGCGAACAACGACCTGAGTGACCTCGTGAAGCTTCTGGAAATCGTAA 60193
Query 145590 ACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTG 145649
|| | |||| | | | || || || | ||| | || ||||| || || || |
Sbjct 60192 AC--ACCCTCATTGTAGTCAACGAAGGTAGGCAGGGCAAGAGAGGCCAAGTTGCAGACAG 60135
Query 145650 CCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGG 145709
| ||| |||| | ||| ||| | | ||||| | ||| | ||| | |||||
Sbjct 60134 CGACCTCATCGGGGGCGCAGTACTCAATAATCTCAGTGCAGAGGTTGGAGCTGCGGATGG 60075
Query 145710 TTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTC 145769
|||| || || | || || || || | ||| || |||||||| |||||| | ||
Sbjct 60074 TTCCGAGGTTCTTTTGGTTGCTCTTGCGGTTCGCGGCATCCTTGTAAAGCATGAAGGGGT 60015
Query 145770 CGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAA--GTCCTGCGCACGCACCTG 145827
||| ||||| ||| | ||| | ||| || ||| | ||| || | ||
Sbjct 60014 TGCCGGTCTCAGTCTGAGCCTCGAGGAT--GGCGTACCAAAGCTTCTGGGC-----CTTG 59962
Query 145828 CTGCTGGTAGCG------GCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGA 145881
|| | | ||| |||||| ||||| || ||| | |||||||| |
Sbjct 59961 ATGGT-CTTGCGACCCTTGCCCTCGCGCTCGTACTTTTCGTACAAGGCCTCAAACTCCTC 59903
Query 145882 ACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTT 145941
|||||||| || | ||||||||| |||| |||||| ||||| || | |||| || ||||
Sbjct 59902 GCCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGGCACATGAGGGTCCATTCGGCGTT 59843
Query 145942 GGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGC 146001
| ||| | || ||| |||| ||| || | ||| || ||| | | ||| || ||
Sbjct 59842 CTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGGGCGAGGAAAAGGTCACGGGC 59783
Query 146002 TTTGCAATCCTCAGCACCCATGTT-TCGCTTCAAAT-TAAGCACACTATAGATGTCCGCG 146059
| ||||| || ||| | || ||| | | | || | | ||| || |||
Sbjct 59782 ACGGACCTCCTCCTTGCCGTGGTTCTTGC-GCAAGTCCATGAACTCGA-AGACATCGGCG 59725
Query 146060 TGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCG---TTTGCCACCCTGGTCCACG 146116
||||| || |||| |||| ||||| ||| || || |||||||||||||| |||
Sbjct 59724 TGCCAGGGCTCAAGGTAGATGGCGAAGGCACCAGGACGCTTGTTGCCACCCTGGTCGACG 59665
Query 146117 TGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTC 146176
| || | ||||||| ||||| || | |||||| ||||||| | | ||||||
Sbjct 59664 TAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACGCCGTTAGAGGTGCCGTTG 59605
Query 146177 GTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCC- 146235
|| | || || ||| || || | | ||| | || | ||| | || ||
Sbjct 59604 GTGCCGGCAATGTAGGAGCCAGTGGCACGGATACGGTGAGCGTTGAGGCCAATGCCACCA 59545
Query 146236 GCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATG--CTA 146293
||| | |||||| || ||||||| ||| || |||||||| || |||||| |
Sbjct 59544 GCCAT-CTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCCTCAATGGAGTC 59486
Query 146294 TCGCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAG 146353
| |||| ||| ||| || ||||| || ||| ||| | || || || || |
Sbjct 59485 TTCCTTC--ATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAGGGGTACCGGCATTG 59428
Query 146354 AACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATACGTTTCGATA 146413
|| | || ||| ||||| || || | || | | ||| | || || |||||
Sbjct 59427 AAAAGTGTGGGGGAGGCGTGTGTGAAGAACTTGCTGGACATGAGGTTGTAGGTCTCGATG 59368
Query 146414 GCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGC 146473
|| | || |||||||| || || | ||||| ||||||| |||||| || ||
Sbjct 59367 ACGCGCTCAACATCGTCGCCCCAGATACCGACTGCGACACGCATGATCATGTGCTGCGGT 59308
Query 146474 CGCTCCGCCA-CTTGATTGTCAATCTTTAACAAATAGCCGTTCTCCAGGGTTTTGTATCC 146532
| ||| || | |||| ||| | ||| | || || ||||||| || ||| | ||
Sbjct 59307 CTCTCGGCAATCTTG-CCGTCGAGCTTGAGCAGGTATGATCTCTCCAGAGTCTTGAAGCC 59249
Query 146533 GAAAAATTTGTA 146544
||| ||| |||
Sbjct 59248 GAAGTATTGGTA 59237
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472002067608960
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