Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06-
15] 1,819 sequences; 35,034,269 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq866 134 1e-26
seq766 91.5 1e-13
>seq866
Length=7889
Score = 134 bits (148), Expect = 1e-26
Identities = 152/204 (75%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
||||| || || ||||||| || || || | |||||||| | ||| | ||||
Sbjct 2155 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCATCCGATACCATCGACAACGTCAAGTCC 2214
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| ||||||||||||||||| ||||| |||||||| || ||||| || || || ||||||
Sbjct 2215 AAGATTCAAGACAAGGAGGGCATTCCCCCCGATCAGCAGCGTCTCATTTTCGCTGGCAAA 2274
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422
||| | ||||| ||||||| ||||||| |||||||| || || || || ||| | ||
Sbjct 2275 CAGCTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCTACCCTTCAC 2334
Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446
|| ||| | || | || || |||
Sbjct 2335 TTGGTTCTCCGCCTTCGTGGTGGT 2358
Score = 120 bits (132), Expect = 3e-22
Identities = 149/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
||||| || || |||| ||||| || || | | |||||| | ||| | ||||
Sbjct 2441 ACCGGCAAGACCATCACCCTTGAGGTCGAGTCTTCTGATACCATCGACAACGTCAAGTCC 2500
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| ||||| ||||||||||| ||||| || || || || ||| | || ||||| |||||
Sbjct 2501 AAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAGCAGCGTTTGATCTTTGCTGGCAAG 2560
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422
|| | |||||| ||||||| ||||||| ||||||||||| || || ||||| | ||
Sbjct 2561 CAACTTGAGGATGGCCGCACCCTCTCCGACTACAACATTCAGAAGGAGTCCACGCTCCAC 2620
Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446
|| ||| | || | ||||| |||
Sbjct 2621 TTGGTTCTCCGTCTTCGCGGTGGT 2644
Score = 91.5 bits (100), Expect = 1e-13
Identities = 92/120 (77%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| ||||| || ||||||||||| || ||||| || || |||||||| || || || ||
Sbjct 2957 AAGATTCAGGATAAGGAGGGTATCCCTCCCGACCAGCAGCGTCTTATCTTCGCTGGAAAG 3016
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422
||||| || ||| |||||| | ||| |||||||| || || ||||||||| | |||
Sbjct 3017 CAGTTGGAAGATGGTCGCACCCTGAGCGACTACAACATCCAGAAGGAATCCACCCTTCAT 3076
Score = 82.4 bits (90), Expect = 6e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || ||| | || || || || |||| || || || ||| | |
Sbjct 2645 ATGCAGATCTTCGTGAAGACTCTTACTGGCAAGACAATCACGCTCGAGGTTGAATCTTCA 2704
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| | | || || || ||||| ||||||||||| || ||||| ||
Sbjct 2705 GACACCATTGACAACGTTAAGTCGAAGATCCAAGATAAGGAGGGTATCCCCCCCGACCAG 2764
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || | || || ||||| || ||| | ||||| ||||| | || || ||||||
Sbjct 2765 CAGCGCTTGATCTTCGCCGGAAAGCAGCTTGAGGACGGTCGCACGTTGTCGGACTACAAC 2824
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| || || || || ||| | ||| | || | || |||| || |||
Sbjct 2825 ATCCAGAAGGAGTCTACCCTGCATCTTGTCCTCCGTCTGCGTGGTGGT 2872
>seq766
Length=50960
Score = 91.5 bits (100), Expect = 1e-13
Identities = 128/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286
||| || || || | || ||||| || | || ||||| || || || |||| || |
Sbjct 114 TTTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCCGACACGAT 173
Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346
||| || |||| || || || ||||||||||| || || ||||| || || || |
Sbjct 174 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTT 233
Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406
|| || || ||||| ||| | ||||| ||||||| ||||||| |||||||| || ||
Sbjct 234 GATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAA 293
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419718695023735
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |