Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06- 15] 1,819 sequences; 35,034,269 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq525 109 1e-18 seq720 89.7 1e-12 >seq525 Length=146887 Score = 109 bits (120), Expect = 1e-18 Identities = 246/362 (68%), Gaps = 12/362 (3%) Strand=Plus/Plus Query 87559 AAGGCCGGCAATCTTCGCGATG--CTTTTGCCAAGACGAGCGCACCATTCTTTGTCATCT 87616 ||||| ||||| ||| | |||| ||||||| |||| |||| | ||||| | |||| Sbjct 6392 AAGGCTGGCAA-CTT-GAGATGGACTTTTGCTCAGACTAGCGGAGACTTCTTCGCAATCT 6449 Query 87617 TCGATGCTGACTTCTGCCCGCGCAAGGACTTCATCACGGAAATTATGCCATA---CTTCA 87673 ||||||| ||||||||||||||| ||||| | | |||| | ||| | ||| Sbjct 6450 TCGATGCCGACTTCTGCCCGCGCCCTGACTTTGTTAAGGAATTGATGGTTGAGCACTTGG 6509 Query 87674 ACTATGACAAATCCATCGCCATCGTCCAGACCCCCCAGTTCTTTGAGGTGCGTCCA-GAC 87732 | | || || | ||| | || || | ||| |||| ||| || | | | ||| Sbjct 6510 GCGACGATAAGACG---GCCCTTGTTCAAAGCCCACAGTACTTCCGTGT-CACCGACGAC 6565 Query 87733 CAGACTTGGGTAGAGCGTGCTGCAGGTTCTGTCCAGGAACTGTTCTACCGCTTCATCCAG 87792 ||||||||||| |||| | |||||| || ||||| || |||||||| | | ||| Sbjct 6566 CAGACTTGGGTTGAGCAGGGAGCAGGTGCTACACAGGAGCTTTTCTACCGTGTTGTACAG 6625 Query 87793 GTGTCTCGCGAATCATTTGGCGCTGCAGTGTGCGTGGGTACTTGTGCTATGTATCGTCGC 87852 || || | || || || || | ||||| |||| ||| | || ||||| Sbjct 6626 GTCAACCGTAATAGATGGGGAGCCTCAATCTGCGTCGGTAGCAATGCCCTCTACCGTCGT 6685 Query 87853 GAGGCCCTGGTGCCATTTGGCGGCACTGCTGAAATCGGTTTCAGCGAGGATGTCCACACC 87912 ||| |||| || ||||||| ||||| ||||| |||||| ||||||||||||||| Sbjct 6686 GAGTCCCTTGTCGAGGTTGGCGGAACTGCCGAAATTGGTTTCTCTGAGGATGTCCACACC 6745 Query 87913 GG 87914 || Sbjct 6746 GG 6747 >seq720 Length=51142 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || || ||||| ||||| |||||||||||| ||||| | |||| ||||| || | Sbjct 7820 GTCGGCTCCCTGTCCGGTGGATGGAAGATGAAGTTGGCCTTGGCTCGTGCCATGCTGAAG 7761 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 | || |||||||| |||| || || || || |||||| ||||| ||||| | ||| Sbjct 7760 GGCGCTGATGTCCTGTTGCTGGACGAACCTACTAACCACTTGGACGTTGCCAACATTGCC 7701 Query 279816 TGGCTAGTGTCCTACCT 279832 ||||| | | |||||| Sbjct 7700 TGGCTCGAGAACTACCT 7684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027812845299779