Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06- 15] 1,819 sequences; 35,034,269 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq866 167 4e-36 seq525 104 4e-17 seq720 95.1 2e-14 >seq866 Length=7889 Score = 167 bits (184), Expect = 4e-36 Identities = 167/217 (77%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || |||||||| || | |||||||| ||||||||||| || || ||||| || |||||| Sbjct 2643 CCACCGCGAAGACGGAGAACCAAGTGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGAG 2584 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | ||||| || || || || | | || ||||| || ||| Sbjct 2583 AGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGAGGA 2524 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| | ||||||| |||||||| || | || || || Sbjct 2523 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTATCAGAAGACTCGACC 2464 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 || | ||||||||| || || |||||||||||||||| Sbjct 2463 TCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGA 2427 Score = 150 bits (166), Expect = 3e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | |||||||| || || ||||| || |||||||| || |||||| Sbjct 2357 CCACCACGAAGGCGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 2298 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | ||| || || ||||| ||||| | || || ||||| ||| Sbjct 2297 AGGGTGCGGCCGTCCTCAAGCTGTTTGCCAGCGAAAATGAGACGCTGCTGATCGGGGGGA 2238 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||||||||||||||| | ||||||| |||||||| || | ||| || || Sbjct 2237 ATGCCCTCCTTGTCTTGAATCTTGGACTTGACGTTGTCGATGGTATCGGATGACTCGACC 2178 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 || | |||||||| || || || Sbjct 2177 TCGAGAGTGATGGTCTTGCCGGT 2155 >seq525 Length=146887 Score = 104 bits (114), Expect = 4e-17 Identities = 215/317 (68%), Gaps = 10/317 (3%) Strand=Plus/Minus Query 59297 CCCGTGTGGACGTCCTCGCTGAAGCCAATCTCAGCAGTGCCGCCGAAAGGTACAAGCGCC 59356 || |||||||| ||||| ||| ||||| || ||||| ||||| | ||||| | | Sbjct 6747 CCGGTGTGGACATCCTCAGAGAAACCAATTTCGGCAGTTCCGCCAACCTCGACAAGGGAC 6688 Query 59357 TCTCGGCGGTAGACTGCGCATGTC--CCGACGCACACGGCGCCGCCAAAGGTGTCGCGAG 59414 || || ||||||| | |||| | |||||||| | | | | || | | | || Sbjct 6687 TCACGACGGTAGA--GGGCATTGCTACCGACGCAGATTGAGGCTCCCCATCTATTACGGT 6630 Query 59415 AAACCTGGATGAAACGGTAGAACAGTTCCTGGACGGATCCAGCAGCGCGCTCAACCCAAG 59474 ||||| | | ||||||||| || ||||| | || || | |||||||||||| Sbjct 6629 TGACCTGTACAACACGGTAGAAAAGCTCCTGTGTAGCACCTGCTCCCTGCTCAACCCAAG 6570 Query 59475 TCTGGTCGGGGCGAACCTCGAAGAACTGGGGGGTCTGCACAATCGCGATCTTGCCGTCAT 59534 |||||||| | || |||| |||| ||| | || |||| || |||| |||| Sbjct 6569 TCTGGTCGTCGGTGACACGGAAGTACTGTGGGCTTTGAACAAGGGCCGTCTTATCGTC-- 6512 Query 59535 GGGAAAAGTAGGG---CATGATTTCCTTGAGGTAGTCAGGGCGCGGACAGAAGTCAGCAT 59591 | |||| ||| | |||||| | ||||||||||||| |||||||| |||| Sbjct 6511 -GCCCAAGTGCTCAACCATCAATTCCTTAACAAAGTCAGGGCGCGGGCAGAAGTCGGCAT 6453 Query 59592 CGAAGATGGCAAAGAAG 59608 ||||||| || |||||| Sbjct 6452 CGAAGATTGCGAAGAAG 6436 >seq720 Length=51142 Score = 95.1 bits (104), Expect = 2e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 225514 GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTC 225573 |||||| || | |||| ||||||| |||||| |||||||||||||| | ||||| || Sbjct 7695 GAGCCAGGCAATGTTGGCAACGTCCAAGTGGTTAGTAGGTTCGTCCAGCAACAGGACATC 7754 Query 225574 AGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGA 225633 ||| | | || ||||| || | | | || |||||| ||||| || ||||||||||| Sbjct 7755 AGCGCCCTTCAGCATGGCACGAGCCAAGGCCAACTTCATCTTCCATCCACCGGACAGGGA 7814 Query 225634 GCCGA 225638 ||||| Sbjct 7815 GCCGA 7819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921601444610680