Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06-
15] 1,819 sequences; 35,034,269 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq866 96.9 3e-15
>seq866
Length=7889
Score = 96.9 bits (106), Expect = 3e-15
Identities = 152/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| || || || | | ||| || || | ||| || || || ||||||||||| |||
Sbjct 2646 ATACCACCGCGAAGACGGAGAACCAAGTGGAGCGTGGACTCCTTCTGAATGTTGTAGTCG 2587
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| || || ||| |||||||| || ||||| |||| | |||||| ||||| |||
Sbjct 2586 GAGAGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGA 2527
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|||||||| || ||||| |||||| || | | || | ||| || | || |||
Sbjct 2526 GGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTATCAGAAGACTCG 2467
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 114370
|| || | ||| | || |||||||| || || || ||
Sbjct 2466 ACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 2429
Score = 87.8 bits (96), Expect = 2e-12
Identities = 143/206 (69%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | | ||| || || | ||||| || || || |||||||| |||
Sbjct 2360 ATACCACCACGAAGGCGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCG 2301
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| || || || ||||| ||||| |||||| | ||||||||||| || || ||
Sbjct 2300 GAGAGGGTGCGGCCGTCCTCAAGCTGTTTGCCAGCGAAAATGAGACGCTGCTGATCGGGG 2241
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|||||||| || ||||| |||||| || | | || | ||| |||| || |||
Sbjct 2240 GGAATGCCCTCCTTGTCTTGAATCTTGGACTTGACGTTGTCGATGGTATCGGATGACTCG 2181
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGT 114358
|| || | || | || ||||||||
Sbjct 2180 ACCTCGAGAGTGATGGTCTTGCCGGT 2155
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420125086014228
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |