Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06- 15] 1,819 sequences; 35,034,269 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1170 462 4e-125 >seq1170 Length=97779 Score = 462 bits (512), Expect = 4e-125 Identities = 1253/1896 (66%), Gaps = 75/1896 (4%) Strand=Plus/Minus Query 243737 ACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTG 243796 ||| ||||||| | ||| || || |||| || | ||||||||||||||| |||||| Sbjct 61068 ACGGTGAACTGAATGGGAGCAGAAGCTGCCTGAGTACGCAGGTAGTACATGCCCGTCTTG 61009 Query 243797 AGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGG 243856 || ||| |||| | || ||||||| || | ||| ||| | | || Sbjct 61008 AGACCAAGCTTCCAGCCAGCGAAGTGCATGCTGGTGATCTTGCCCAT-------TGTCGG 60956 Query 243857 TCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCT 243916 ||||| || || ||||||||||||| |||||| | ||||| | || || Sbjct 60955 --GTCCTT---CATGTGGATGTTGAGGGACTGGGACTGGTCAATGAAGGCACCACGATCG 60901 Query 243917 GCGGCCATGGTGATGA--GGTCCT-TCTGAGATATCTCATACGCCGTCTTGTAGATGGGC 243973 || ||||| ||| | ||| | | ||||| || || ||| |||||||| | | | Sbjct 60900 GCAGCCATC-TGAACAACGGTGCGCTGGGAGATTTCCCAGACG--GTCTTGTACAGAGCC 60844 Query 243974 TTGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGG 244033 |||| | |||||| ||||||||| || || || || | | |||||| || Sbjct 60843 TTGACCTCGGCGGGGATGTTAGGGATGTTCTGAACGGAACCGTTCTCGGCGATGATACGG 60784 Query 244034 GTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCTGTTC 244093 | |||| |||| ||||| ||||| | | || ||| | ||| ||| Sbjct 60783 TTCTTCATGGCATCGGACCACAAGCCCATGTCGACAAGATCCTTCAGCAGCCAGGGGTTG 60724 Query 244094 ACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCG 244153 || ||||| ||||| || | || || ||||||||||||| |||| | || |||||| Sbjct 60723 ACAACCTGGAACTCGCCGGCGAGAACACGGCGCTGGTAGATGTTGGAGGTGTAGGGCTCG 60664 Query 244154 ATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGC 244213 | || ||| ||||||||| ||||| | ||| ||||| |||||||| | || ||| Sbjct 60663 AAGCACTCGTTGTTGCCCAAGATCTGGGAAGTGGAGGCAGTAGGCATGGGAGCAACAAGC 60604 Query 244214 AGACTGTTCCTCACGCCGTGCCTCTGGAT--GCGGAGTCTGAGCTCGTTCCAGTCCCACA 244271 | |||||| | || |||||| || ||| || || ||| || ||||||||| | Sbjct 60603 AAACTGTTGCGAACACCGTGCTCCTTGATTTGCTCCTTCAGAGA--GTCCCAGTCCCAGA 60546 Query 244272 TGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGA 244331 | | ||||| | | | || ||||||||| |||| || | |||| | || Sbjct 60545 GGTC--AGAGGGCTTGACATT-------CCACATGTCGTACTGAAGGATACCCTGGGAGA 60495 Query 244332 CGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTC-TCG 244390 ||| ||||||||| || | ||||| ||| || | |||||| | | | | | | Sbjct 60494 TAGGGGAGCCCTCGTACGTGGAGTAGGTACCCTCCTCCCTGGCCAGTTGAACGGACATGG 60435 Query 244391 TCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCG 244450 || || ||||||| |||||||||||| || ||| |||| || | ||||| |||| | | Sbjct 60434 TC-AGAGCGGCGTGGTAGATGGTCTCAAAAATCTTCTTATTGAGATCGCGAGCCT--CAG 60378 Query 244451 CAGGT--GAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGC 244508 || ||| || |||| | | |||| | || || || ||||| || || | | Sbjct 60377 GAGACTCGAAAGGCATGCGGAGGGCGAGGAAGGCATCAGCAAGACCCTGGACACCAAGAC 60318 Query 244509 CGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGT 244568 ||||||| | ||| ||| ||||| | || || || |||||||| |||| | | Sbjct 60317 CGATGGGGCGGTGACGCATGTTGCTGTTGCGAGCCTCAGGAACGGGGTAGTGGTTGACAT 60258 Query 244569 CGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGT 244628 | || | |||||| |||||||| | | | ||| ||| ||| ||| || | Sbjct 60257 CAATGATCTTGTTCAGGTTGCGAACAACGACCTGAGTGACCTCGTGAAGCTTCTGGAAAT 60198 Query 244629 CGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTG--AGGGCGACGCT 244686 |||| | | |||| || || || || || || | ||||| | Sbjct 60197 CGTAAAC------ACCCTC----ATTGTAGTCA--ACGAAG--GTAGGCAGGGCAAGAGA 60152 Query 244687 GGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAG 244746 ||||| ||||||||| || ||||| || | | | ||||| | |||||| |||||||| Sbjct 60151 GGCCAAGTTGCAGACAGCGACCTCATCGGGGGCGCAGTACTCAATAATCTCAGTGCAGAG 60092 Query 244747 GTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTT 244806 ||| || |||||| || |||| || || ||| |||| ||| ||| ||||| Sbjct 60091 GTTGGAGCTGCGGATGGTTCCGAGGTTCTTTTGGTTGCTCTTGCGGTTCGCGGCATCCTT 60032 Query 244807 GTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTC 244866 ||| ||||||||||| |||||||| ||| || |||||| | || ||| || | Sbjct 60031 GTAAAGCATGAAGGGGTTGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTACCAAAGCTT 59972 Query 244867 CCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTC 244926 | ||||||| ||| ||||| |||||||||| |||||| ||||| |||||| Sbjct 59971 CTGGGCCTTGATGGTCTTGCGACCCTTGCCCTCGCGCTCGTACTTTTCGTACAAGGCCTC 59912 Query 244927 GAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCA 244986 ||||| ||| || || | |||||||||||| ||||||||||| |||| Sbjct 59911 AAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGGCACATGAGGGTCCA 59852 Query 244987 CTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAG 245046 ||| || | || ||| |||| |||||| || ||||||||||||||||| |||| || Sbjct 59851 TTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGGGCGAGGAAAAG 59792 Query 245047 GTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGAC 245106 ||| | || | ||| ||| ||| |||||| | || |||| || || ||||| Sbjct 59791 GTCACGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAACTCGAAGAC 59732 Query 245107 GTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTG 245166 ||| ||||||||||||| | ||||| |||| ||| || || ||||||||||| ||||| Sbjct 59731 ATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCACCAGGACGCTTGTTGCCACCCTG 59672 Query 245167 GTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAG 245222 ||| | | | ||||| |||||||| || || | || | | |||||||| Sbjct 59671 GTCGA----CGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACGCCGTTAG 59616 Query 245223 AGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGA---GGTTGCTGATGGACA 245279 || |||||||||||| ||||||| ||| || | | || ||| | || | Sbjct 59615 AGGTGCCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCACGGATACGGTGAGCGTTG---A 59559 Query 245280 TGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGC 245339 ||| | || || || ||||||||| | ||||||| |||||| |||||| || | Sbjct 59558 GGCCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATAC 59499 Query 245340 CCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGC 245399 |||| ||| ||| |||||||| || || ||||| || ||||||||| || ||| Sbjct 59498 CCTCAATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAGGGG 59439 Query 245400 TGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGT 245459 | | | ||||| || |||||| |||||| || ||| | ||| || | || || Sbjct 59438 TACCGGCATTGAAAAGTGTGGGGGAGGCGTGTGTGAAGAACTTGCTGGACATGAGGTTGT 59379 Query 245460 ACGTCTGGA-GCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCACCTCATGAGG 245518 | |||| || | | || || | | |||||| ||| | ||| | ||||| Sbjct 59378 AGGTCTCGATGACGCGC-TCAACATCGTCGCCCCAGATACCGACTGCGACACGCATGATC 59320 Query 245519 GTGTGCTGGGGCGTCTCG---ATGGGTCCCTCGGGTCCCTTGAGCATGTAGGAGCGCTCG 245575 ||||||| || ||||| || || ||| | |||||||| ||| || | ||| Sbjct 59319 ATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCGAG---CTTGAGCAGGTATGATCTCTCC 59263 Query 245576 AGCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTCG 245611 || |||||||| || ||||| |||| |||||| Sbjct 59262 AGAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCG 59227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944317728087440