Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06- 15] 1,819 sequences; 35,034,269 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq866 98.7 1e-15 >seq866 Length=7889 Score = 98.7 bits (108), Expect = 1e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || || || || |||||||| || | || |||||| |||| |||||||| Sbjct 2333 TGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGT 2274 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 ||||| || ||||||| |||||||| ||||| ||||| || || || ||||| || || Sbjct 2273 TTGCCAGCGAAAATGAGACGCTGCTGATCGGGGGGAATGCCCTCCTTGTCTTGAATCTTG 2214 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||| || || | ||||| | || || || | ||| | |||||||||||| Sbjct 2213 GACTTGACGTTGTCGATGGTATCGGATGACTCGACCTCGAGAGTGATGGTCTTGCCGGT 2155 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 64246 CGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCC 64305 ||| || || || ||||||||||| || | || |||||| | || ||||| |||||||| Sbjct 2614 CGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGTTGCTTGCC 2555 Query 64306 GGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTT 64365 ||| | || | ||||||||||| |||||||| || || || || || || || ||| Sbjct 2554 AGCAAAGATCAAACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTT 2495 Query 64366 TACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 || || | |||||| | || || || | || | |||||||||||| | || Sbjct 2494 GACGTTGTCGATGGTATCAGAAGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGGGT 2435 Query 64426 TTTTACGA 64433 || |||| Sbjct 2434 CTTGACGA 2427 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| || ||||| || || |||||||| || | |||||| | ||| Sbjct 3084 AGGACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCT 3025 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | |||||| || || | || || ||||||||||||||||| || || || || || Sbjct 3024 TCCAACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTATCC 2965 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || || | || || | || || || | || | ||| Sbjct 2964 TGAATCTTAGACTTCACGTTGTCAATCGTGTCTGATGACTCGACCTCCAAGGTAATCGTC 2905 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| ||||| || || ||||| || ||||| Sbjct 2904 TTGCCAGTCAACGTCTTCACGAAGATCTGCAT 2873 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | || || ||||| | || || || || || |||||||| || | Sbjct 2872 ACCACCACGCAGACGGAGGACAAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGA 2813 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| |||| ||||||||||| ||||| | || | |||||||||||||| || Sbjct 2812 CAACGTGCGACCGTCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGG 2753 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || ||||| || || ||| || || | || || | || || Sbjct 2752 GATACCCTCCTTATCTTGGATCTTCGACTTAACGTTGTCAATGGTGTCTGAAGATTCAAC 2693 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||| || | ||| || ||||| || ||||| Sbjct 2692 CTCGAGCGTGATTGTCTTGCCAGTAAGAGTCTTCACGAAGATCTGCAT 2645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499633439326360