Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06- 15] 1,819 sequences; 35,034,269 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq1170 363 2e-95 >seq1170 Length=97779 Score = 363 bits (402), Expect = 2e-95 Identities = 1099/1676 (66%), Gaps = 46/1676 (3%) Strand=Plus/Plus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||| | |||||| |||||||||| || ||||| |||||| | || ||| Sbjct 59234 AACTACCAATACTTCGGCTTCAAGACTCTGGAGAGATCATACCTGCTCAAGCTCGACGGC 59293 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | | || ||||| ||||||| || || | ||||| ||||| |||| || ||| || Sbjct 59294 AAGATTGCCGAGAGACCGCAGCACATGATCATGCGTGTCGCAGTCGGTATCTGGGGCGAC 59353 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 || | | || | | | | || |||| |||| | || ||| Sbjct 59354 GATGTTGAGCGCGTCATCGAGACCTACAACCTCATGTCCAGCAAGTTCTTCACACACGCC 59413 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCG--GTGCCACAGATGTCTTCGTGTTTCCTGA 93952 |||| || || ||||| || || ||||| |||||| | ||||||| || ||||| Sbjct 59414 TCCCCCACACTTTTCAATGCCGGTACCCCTCAGTGCCA--GCTGTCTTCATGCTTCCTCG 59471 Query 93953 T-GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 | ||| | |||| |||||||| || || | ||||| ||||||| ||| || | Sbjct 59472 TCGAC-ATGAAGGAAGACTCCATTGAGGGTATCTACGACACCCTCAAGACCTGCGCCATG 59530 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTA--CGTGCCAGGGGTT 94069 ||||| || || || || || || ||| | ||| |||| ||||||| || | Sbjct 59531 ATCTCCAAGATGGCTGGTGGCATTGGCCTCAACGCTCAC--CGTATCCGTGCCACTGGCT 59588 Query 94070 CCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCA 94129 ||||||| ||| ||||| |||||||| |||||| || | || ||||| || ||||||| Sbjct 59589 CCTACATTGCCGGCACCAACGGCACCTCTAACGGCGTCATTCCCATGCTTCGTGTCTTCA 59648 Query 94130 ACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCT 94189 ||||| | || |||||||| ||||||||||| | | | ||| | ||||| ||| Sbjct 59649 ACAACACTGCTCGCTACGTCGACCAGGGTGGCAACAAGCGTCCTGGTGCCTTCGCCATCT 59708 Query 94190 ATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCA 94249 | || |||||||||||||| || || | ||||| ||| |||| ||||||||||||| Sbjct 59709 ACCTTGAGCCCTGGCACGCCGATGTCTTCGAGTTCATGGACTTGCGCAAGAACCACGGCA 59768 Query 94250 ACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGA 94309 | || || | ||| | ||||| ||| ||| |||||| | || || || || |||| Sbjct 59769 AGGAGGAGGTCCGTGCCCGTGACCTTTTCCTCGCCCTCTGGATCCCCGATCTGTTCATGA 59828 Query 94310 AACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGT 94369 | | |||||||| ||| ||| |||| || | || ||||| || || ||||| ||| Sbjct 59829 AGAGAGTCGAGAAGAACGCCGAATGGACCCTCATGTGCCCCAACGAGTGCCCCGGCCTGG 59888 Query 94370 CCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGC-AGGGCAAG 94428 | ||| | || | ||||| | |||||| | |||| | ||| |||||||| Sbjct 59889 CTGACTGCTACGGCGAGGAGTTTGAGGCCTTGTACGAAAAGTACG-AGCGCGAGGGCAAG 59947 Query 94429 GCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAG 94488 | | ||| || | || |||||| ||| | ||| | || | ||| ||| Sbjct 59948 GGTCGCAAGACCATCAAGGCCCAGAAGCTTTGGTACGCCATCCTCGAGGCTCAGACTGAG 60007 Query 94489 ACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCAC 94548 || || | |||| ||| | | |||||| | | ||| |||| |||||| || || Sbjct 60008 ACCGGCAACCCCTTCATGCTTTACAAGGATGCCGCGAACCGCAAGAGCAACCAAAAGAAC 60067 Query 94549 CTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGAC 94608 ||||| ||| ||||| || || ||||| |||||| | ||||| | || || Sbjct 60068 CTCGGAACCATCCGCAGCTCCAACCTCTGCACTGAGATTATTGAGTACTGCGCCCCCGAT 60127 Query 94609 GAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTAC 94668 ||| | ||||| || ||| ||| ||| | |||| | || ||||| || |||| Sbjct 60128 GAGGTCGCTGTCTGCAACTTGGCCTCTCTTGCCCTGCCTACCTTCGT------TGACTAC 60181 Query 94669 ACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTT- 94727 | | | | | |||| | || ||||| | || | ||| | | || Sbjct 60182 A---ATGAGGGTGTTTACGATTTCCAGAAGCTTCACGAGGTCAC--TCAGGTCGTTGTTC 60236 Query 94728 -GAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAA 94786 |||||||||| | | || || ||| ||||||||| || ||||| ||| | Sbjct 60237 GCAACCTGAACAAGATCATTGATGTCAACCACTACCCCGTTCCTGAGGCTCGCAACAGCA 60296 Query 94787 ACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGA 94846 || || || || |||||||| | || ||||||||| | || || || | | Sbjct 60297 ACATGCGTCACCGCCCCATCGGTCTTGGTGTCCAGGGTCTTGCTGATGCCTTCCTCGCCC 60356 Query 94847 TGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCA 94906 | || |||| | ||| ||| || || | | | ||| ||| || || || | || Sbjct 60357 TCCGCATGCCTTTCGAGTCTCCTGAGGCTCGCGATCTCAATAAGAAGATTTTTGAGACCA 60416 Query 94907 TTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGG---CCAC 94963 | || ||| || ||| ||||| || ||||||| ||| || ||| | || Sbjct 60417 TCTACCACGCCGCTCTGACCATGTCCGTTCAACTGGCCAG---GGA-GGAGGGTACCTAC 60472 Query 94964 ACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTG 95023 | | ||| | || || || | ||||| || |||||| |||| | ||| || Sbjct 60473 TCCA--CGTACGAGGGCTCCCCTATCTCCCAGGGTATCCTTCAGTACGACATGTGGAATG 60530 Query 95024 TGAAGCCCTCGGGTCTGTACGACTGGGAAGCTCT--ACGCGCTGATGTTATCAAACACGG 95081 | |||||||| | || | |||||||| |||| | | || | | | | ||||| Sbjct 60531 TCAAGCCCTCTGACCTCTGGGACTGGGACTCTCTGAAGGAGC--AAATCAAGGAGCACGG 60588 Query 95082 TGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGG 95141 ||| ||| ||||||| || |||||||| || |||||||| | |||||| | || Sbjct 60589 TGTTCGCAACAGTTTGCTTGTTGCTCCCATGCCTACTGCCTCCACTTCCCAGATCTTGGG 60648 Query 95142 CAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGG 95201 ||||||||||| ||||| |||| |||||||||| | ||| | | || || |||||||| Sbjct 60649 CAACAACGAGTGCTTCGAGCCCTACACCTCCAACATCTACCAGCGCCGTGTTCTCGCCGG 60708 Query 95202 GGAATTCCCCGTCATCAACAAGCACCTCCT-ACGGGACCTGACGTCTCTGGGTGTGTGG- 95259 || |||| || ||||| || || | || | || || | |||| ||||| Sbjct 60709 CGAGTTCCAGGTTGTCAACCCCTGGCTGCTGAAGGATCTTGTCGAC-ATGGGCTTGTGGT 60767 Query 95260 --GGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGC 95317 | || || | ||||||| | | || ||||| ||||| ||||||||||| Sbjct 60768 CCGATGCCA---TGAAGAACCGTATCATCGCCGAGAACGGTTCCGTTCAGAACATCCCTA 60824 Query 95318 AAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGC 95373 | || || | || ||||||| || ||||||||||| ||||| ||| | |||||| Sbjct 60825 ACATCCCCGCCGAGGTCAAGGCTCTGTACAAGACCGTCTGGGAAATCTCCCAGCGC 60880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494711951231240