Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06-
15] 1,819 sequences; 35,034,269 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq1170 363 2e-95
>seq1170
Length=97779
Score = 363 bits (402), Expect = 2e-95
Identities = 1099/1676 (66%), Gaps = 46/1676 (3%)
Strand=Plus/Plus
Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774
|| ||| | ||||| | |||||| |||||||||| || ||||| |||||| | || |||
Sbjct 59234 AACTACCAATACTTCGGCTTCAAGACTCTGGAGAGATCATACCTGCTCAAGCTCGACGGC 59293
Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834
| | || ||||| ||||||| || || | ||||| ||||| |||| || ||| ||
Sbjct 59294 AAGATTGCCGAGAGACCGCAGCACATGATCATGCGTGTCGCAGTCGGTATCTGGGGCGAC 59353
Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894
|| | | || | | | | || |||| |||| | || |||
Sbjct 59354 GATGTTGAGCGCGTCATCGAGACCTACAACCTCATGTCCAGCAAGTTCTTCACACACGCC 59413
Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCG--GTGCCACAGATGTCTTCGTGTTTCCTGA 93952
|||| || || ||||| || || ||||| |||||| | ||||||| || |||||
Sbjct 59414 TCCCCCACACTTTTCAATGCCGGTACCCCTCAGTGCCA--GCTGTCTTCATGCTTCCTCG 59471
Query 93953 T-GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011
| ||| | |||| |||||||| || || | ||||| ||||||| ||| || |
Sbjct 59472 TCGAC-ATGAAGGAAGACTCCATTGAGGGTATCTACGACACCCTCAAGACCTGCGCCATG 59530
Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTA--CGTGCCAGGGGTT 94069
||||| || || || || || || ||| | ||| |||| ||||||| || |
Sbjct 59531 ATCTCCAAGATGGCTGGTGGCATTGGCCTCAACGCTCAC--CGTATCCGTGCCACTGGCT 59588
Query 94070 CCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCA 94129
||||||| ||| ||||| |||||||| |||||| || | || ||||| || |||||||
Sbjct 59589 CCTACATTGCCGGCACCAACGGCACCTCTAACGGCGTCATTCCCATGCTTCGTGTCTTCA 59648
Query 94130 ACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCT 94189
||||| | || |||||||| ||||||||||| | | | ||| | ||||| |||
Sbjct 59649 ACAACACTGCTCGCTACGTCGACCAGGGTGGCAACAAGCGTCCTGGTGCCTTCGCCATCT 59708
Query 94190 ATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCA 94249
| || |||||||||||||| || || | ||||| ||| |||| |||||||||||||
Sbjct 59709 ACCTTGAGCCCTGGCACGCCGATGTCTTCGAGTTCATGGACTTGCGCAAGAACCACGGCA 59768
Query 94250 ACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGA 94309
| || || | ||| | ||||| ||| ||| |||||| | || || || || ||||
Sbjct 59769 AGGAGGAGGTCCGTGCCCGTGACCTTTTCCTCGCCCTCTGGATCCCCGATCTGTTCATGA 59828
Query 94310 AACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGT 94369
| | |||||||| ||| ||| |||| || | || ||||| || || ||||| |||
Sbjct 59829 AGAGAGTCGAGAAGAACGCCGAATGGACCCTCATGTGCCCCAACGAGTGCCCCGGCCTGG 59888
Query 94370 CCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGC-AGGGCAAG 94428
| ||| | || | ||||| | |||||| | |||| | ||| ||||||||
Sbjct 59889 CTGACTGCTACGGCGAGGAGTTTGAGGCCTTGTACGAAAAGTACG-AGCGCGAGGGCAAG 59947
Query 94429 GCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAG 94488
| | ||| || | || |||||| ||| | ||| | || | ||| |||
Sbjct 59948 GGTCGCAAGACCATCAAGGCCCAGAAGCTTTGGTACGCCATCCTCGAGGCTCAGACTGAG 60007
Query 94489 ACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCAC 94548
|| || | |||| ||| | | |||||| | | ||| |||| |||||| || ||
Sbjct 60008 ACCGGCAACCCCTTCATGCTTTACAAGGATGCCGCGAACCGCAAGAGCAACCAAAAGAAC 60067
Query 94549 CTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGAC 94608
||||| ||| ||||| || || ||||| |||||| | ||||| | || ||
Sbjct 60068 CTCGGAACCATCCGCAGCTCCAACCTCTGCACTGAGATTATTGAGTACTGCGCCCCCGAT 60127
Query 94609 GAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTAC 94668
||| | ||||| || ||| ||| ||| | |||| | || ||||| || ||||
Sbjct 60128 GAGGTCGCTGTCTGCAACTTGGCCTCTCTTGCCCTGCCTACCTTCGT------TGACTAC 60181
Query 94669 ACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTT- 94727
| | | | | |||| | || ||||| | || | ||| | | ||
Sbjct 60182 A---ATGAGGGTGTTTACGATTTCCAGAAGCTTCACGAGGTCAC--TCAGGTCGTTGTTC 60236
Query 94728 -GAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAA 94786
|||||||||| | | || || ||| ||||||||| || ||||| ||| |
Sbjct 60237 GCAACCTGAACAAGATCATTGATGTCAACCACTACCCCGTTCCTGAGGCTCGCAACAGCA 60296
Query 94787 ACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGA 94846
|| || || || |||||||| | || ||||||||| | || || || | |
Sbjct 60297 ACATGCGTCACCGCCCCATCGGTCTTGGTGTCCAGGGTCTTGCTGATGCCTTCCTCGCCC 60356
Query 94847 TGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCA 94906
| || |||| | ||| ||| || || | | | ||| ||| || || || | ||
Sbjct 60357 TCCGCATGCCTTTCGAGTCTCCTGAGGCTCGCGATCTCAATAAGAAGATTTTTGAGACCA 60416
Query 94907 TTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGG---CCAC 94963
| || ||| || ||| ||||| || ||||||| ||| || ||| | ||
Sbjct 60417 TCTACCACGCCGCTCTGACCATGTCCGTTCAACTGGCCAG---GGA-GGAGGGTACCTAC 60472
Query 94964 ACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTG 95023
| | ||| | || || || | ||||| || |||||| |||| | ||| ||
Sbjct 60473 TCCA--CGTACGAGGGCTCCCCTATCTCCCAGGGTATCCTTCAGTACGACATGTGGAATG 60530
Query 95024 TGAAGCCCTCGGGTCTGTACGACTGGGAAGCTCT--ACGCGCTGATGTTATCAAACACGG 95081
| |||||||| | || | |||||||| |||| | | || | | | | |||||
Sbjct 60531 TCAAGCCCTCTGACCTCTGGGACTGGGACTCTCTGAAGGAGC--AAATCAAGGAGCACGG 60588
Query 95082 TGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGG 95141
||| ||| ||||||| || |||||||| || |||||||| | |||||| | ||
Sbjct 60589 TGTTCGCAACAGTTTGCTTGTTGCTCCCATGCCTACTGCCTCCACTTCCCAGATCTTGGG 60648
Query 95142 CAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGG 95201
||||||||||| ||||| |||| |||||||||| | ||| | | || || ||||||||
Sbjct 60649 CAACAACGAGTGCTTCGAGCCCTACACCTCCAACATCTACCAGCGCCGTGTTCTCGCCGG 60708
Query 95202 GGAATTCCCCGTCATCAACAAGCACCTCCT-ACGGGACCTGACGTCTCTGGGTGTGTGG- 95259
|| |||| || ||||| || || | || | || || | |||| |||||
Sbjct 60709 CGAGTTCCAGGTTGTCAACCCCTGGCTGCTGAAGGATCTTGTCGAC-ATGGGCTTGTGGT 60767
Query 95260 --GGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGC 95317
| || || | ||||||| | | || ||||| ||||| |||||||||||
Sbjct 60768 CCGATGCCA---TGAAGAACCGTATCATCGCCGAGAACGGTTCCGTTCAGAACATCCCTA 60824
Query 95318 AAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGC 95373
| || || | || ||||||| || ||||||||||| ||||| ||| | ||||||
Sbjct 60825 ACATCCCCGCCGAGGTCAAGGCTCTGTACAAGACCGTCTGGGAAATCTCCCAGCGC 60880
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494711951231240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |