Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06- 15] 1,819 sequences; 35,034,269 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1170 199 4e-46 seq866 93.3 4e-14 >seq1170 Length=97779 Score = 199 bits (220), Expect = 4e-46 Identities = 931/1460 (64%), Gaps = 65/1460 (4%) Strand=Plus/Minus Query 153028 GGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAG 153087 ||||||| || || |||||||| || | || || | | || | ||| ||| | | Sbjct 60728 GGTTGACAACCTGGAACTCGCCGGCGAGAACACGGCGCTGGTAGATGTTGGAGGTGTAGG 60669 Query 153088 GTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147 | || ||| | ||||| ||||| | || || | |||| || || |||||| || | Sbjct 60668 GCTCGAAGCACTCGTTGTTGCCCAAGATCTGGGAAGTGGAGGCAGTAGGCATGGGAGCAA 60609 Query 153148 CCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCCC 153207 | | |||| || || | |||||| | || | ||||||| | | ||| |||| Sbjct 60608 CAAGCAAACTGTTGCGAACACCGTGCTCCTTGATTTGCTCCTTCAGAGAGTCCCAGTCCC 60549 Query 153208 ACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTA--ACACTCCTCGACTGGCGGG 153265 | || | || || | | ||||||||||||||||| | | || | || ||| Sbjct 60548 AGAGGTCAGAGGGCTTGACATTCCACATGTCGTACTGAAGGATACCCTGGGAGATAGGGG 60489 Query 153266 ACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTT---CGCAGCTAGCCTC 153322 | ||| | |||| |||| | || || |||||||| || | | | | Sbjct 60488 A--GCCCTCGTACGTGGAGTAGGTACCCTCCTCCCTGGCCAGTTGAACGGACATGGTC-- 60433 Query 153323 GAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCT 153382 || ||| | | ||| ||||| || || | ||||||||| || || || Sbjct 60432 -AGAGCGGCGTGGTAGATGGTCTCAAAAATCTTCTTATTGAGATCGCGAGCCTCAGGAGA 60374 Query 153383 CTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGAT 153442 |||| | |||||||| || | ||||| || || |||||||||| ||| | ||||| Sbjct 60373 CTCGAAAGGCATGCGGAGGGCGAGGAAGGCATCAGCAAGACCCTGGACACCAAGACCGAT 60314 Query 153443 GGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTC-GCTATGGGATAGTGATTGCGATCGA 153501 ||| || || | ||||||| | || ||| | | ||| ||||| ||| ||| | Sbjct 60313 GGGGCGGTGACGCATGTTGCTGTTGCGAGC-CTCAGGAACGGGGTAGTGGTTGACATCAA 60255 Query 153502 TAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCAT 153561 | || ||||| |||||||| || || || | ||| | | | | ||| |||| |||||| | Sbjct 60254 TGATCTTGTTCAGGTTGCGAACAACGACCTGAGTGACCTCGTGAAGCTTCTGGAAATCGT 60195 Query 153562 AGG-----TCATT-TCGTCGACGC--GTACGCATCGATTCACGGCAATAGACGCCAGATT 153613 | ||||| | ||| ||| ||| ||| ||||| ||| |||| || Sbjct 60194 AAACACCCTCATTGTAGTCAACGAAGGTAGGCAG--------GGCAAGAGAGGCCAAGTT 60143 Query 153614 ACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCA 153673 ||||| || ||| |||| | ||| ||||| | ||||| | |||||||||| || Sbjct 60142 GCAGACAGCGACCTCATCGGGGGCGCAGTACTCAATAATCTCAGTGCAGAGGTTGGAGCT 60083 Query 153674 TTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCAT 153733 ||| || | || | || ||||| ||||| || || || ||| | ||||| Sbjct 60082 GCGGATGGTTCCGAGGTTCTTTTGGTTGCTCTTGCGGTTCGCGGCATCCTTGTAAAGCAT 60023 Query 153734 GTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAA---ACCTATGCAGGTCCTGCGC 153790 | | || ||||||||| || | |||| ||| ||| | || | ||| || Sbjct 60022 GAAGGGGTTGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTACCAAAGC---TTCTGGGC 59966 Query 153791 TCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTC 153850 | || ||| |||||||| |||||| ||||||| ||||||||| Sbjct 59965 CTTGATGGTCTTGCGACCCTTGCCCTCGCGCTCGTACTTTTCGTACAAGGCCTCAAACTC 59906 Query 153851 GTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATC 153910 |||||||||||||| || |||||||| |||| | || ||||| || | ||| Sbjct 59905 CTCGCCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGGCACATGAGGGTCCAT----- 59851 Query 153911 GTCGGCGTT------GACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAG 153964 |||||||| ||| | |||||||||||| || | |||||| ||| | || Sbjct 59850 -TCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGGGCGAGGAAAAG 59792 Query 153965 GTCGCGCGCCTTGCAATCCTCCGCGCCCATGTT---GCGTTTCAGATTGA-GCACGCTAT 154020 ||| || || | |||||| ||| ||| ||| || | | | || | | Sbjct 59791 GTCACGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCG---CAAGTCCATGAACTCGA- 59736 Query 154021 AGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTTT---CCGC 154077 ||| |||||||||||||| |||| ||||| ||| | |||||| |||||| || | Sbjct 59735 AGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCACCAGGACGCTTGTTGCCAC 59676 Query 154078 CCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTG 154137 |||| ||||||| ||| | | ||||||||||| || | |||||| | |||| | | Sbjct 59675 CCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACGCCGTTAG 59616 Query 154138 CGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGC 154197 |||||||||||| || | | ||| ||| || | | || |||| | || Sbjct 59615 AGGTGCCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCACGGATACGGTGAGCGTTGAGGC 59556 Query 154198 CAATGCCGCC-GCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATGCCG 154256 ||||||| || ||| | ||| || || |||||| || || |||||| || Sbjct 59555 CAATGCCACCAGCCAT-CTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCC 59497 Query 154257 TCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTT 154316 || ||| || || | | ||| | ||| || ||| ||| || | | || | | | Sbjct 59496 TCAATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTG-GCACTGAGGGGT 59438 Query 154317 CCCGCC---GAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGG 154373 ||| | |||||| | | |||| ||||| || || | || | ||| | | | Sbjct 59437 ACCGGCATTGAAAAGTGTGGGGGA--GGCGTGTGTGAAGAACTTGCTGGACATGAGGTTG 59380 Query 154374 TACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGC 154433 || || |||||| || || | ||| ||||| || |||| ||||| ||||||| | Sbjct 59379 TAGGTCTCGATGACGCGCTCAACATCGTCGCCCCAGATACCGACTGCGACACGCATGATC 59320 Query 154434 ATGTGCTGCGGACGTTCGGC 154453 ||||||||||| | ||||| Sbjct 59319 ATGTGCTGCGGTCTCTCGGC 59300 >seq866 Length=7889 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || | ||| | | | |||||||| || ||||||||||| | Sbjct 2871 CCACCACGCAGACGGAGGACAAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAC 2812 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| || || || |||| |||| | ||||| ||||| || || Sbjct 2811 AACGTGCGACCGTCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGG 2752 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || || || || | || | |||| ||| || | |||||| | || || | Sbjct 2751 ATACCCTCCTTATC-TTGGATCTTCGACTTAACGTTG-TCAATGGTGTCTGAAGATTCAA 2694 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| ||| | || || ||||| ||||| || || || |||||||| Sbjct 2693 CCTCGAGCGTGATTGTCTTGCCAGTAAGAGTCTTCACGAAGATCTGCAT 2645 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| || | ||| | || | ||| | | | || ||||| || |||||||||||||| Sbjct 3100 GCCGCCACGAAGACGGAGGACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCT 3041 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || || || | || || || | |||| |||||||| ||||| ||||| Sbjct 3040 CAGGGTGCGACCATCTTCCAACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGG 2981 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564 ||||| || || || ||| | || | || | ||| || | ||||| | ||||| Sbjct 2980 GATACCCTCCTTATC-CTGAATCTTAGACTTCACGTTG-TCAATCGTGTCTGATGACTCG 2923 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| | || | ||| || ||||||| || || || || |||||||| Sbjct 2922 ACCTCCAAGGTAATCGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 2873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496251116233680