Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06-
15] 1,819 sequences; 35,034,269 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq1170 199 4e-46
seq866 93.3 4e-14
>seq1170
Length=97779
Score = 199 bits (220), Expect = 4e-46
Identities = 931/1460 (64%), Gaps = 65/1460 (4%)
Strand=Plus/Minus
Query 153028 GGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAG 153087
||||||| || || |||||||| || | || || | | || | ||| ||| | |
Sbjct 60728 GGTTGACAACCTGGAACTCGCCGGCGAGAACACGGCGCTGGTAGATGTTGGAGGTGTAGG 60669
Query 153088 GTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147
| || ||| | ||||| ||||| | || || | |||| || || |||||| || |
Sbjct 60668 GCTCGAAGCACTCGTTGTTGCCCAAGATCTGGGAAGTGGAGGCAGTAGGCATGGGAGCAA 60609
Query 153148 CCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCCC 153207
| | |||| || || | |||||| | || | ||||||| | | ||| ||||
Sbjct 60608 CAAGCAAACTGTTGCGAACACCGTGCTCCTTGATTTGCTCCTTCAGAGAGTCCCAGTCCC 60549
Query 153208 ACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTA--ACACTCCTCGACTGGCGGG 153265
| || | || || | | ||||||||||||||||| | | || | || |||
Sbjct 60548 AGAGGTCAGAGGGCTTGACATTCCACATGTCGTACTGAAGGATACCCTGGGAGATAGGGG 60489
Query 153266 ACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTT---CGCAGCTAGCCTC 153322
| ||| | |||| |||| | || || |||||||| || | | | |
Sbjct 60488 A--GCCCTCGTACGTGGAGTAGGTACCCTCCTCCCTGGCCAGTTGAACGGACATGGTC-- 60433
Query 153323 GAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCT 153382
|| ||| | | ||| ||||| || || | ||||||||| || || ||
Sbjct 60432 -AGAGCGGCGTGGTAGATGGTCTCAAAAATCTTCTTATTGAGATCGCGAGCCTCAGGAGA 60374
Query 153383 CTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGAT 153442
|||| | |||||||| || | ||||| || || |||||||||| ||| | |||||
Sbjct 60373 CTCGAAAGGCATGCGGAGGGCGAGGAAGGCATCAGCAAGACCCTGGACACCAAGACCGAT 60314
Query 153443 GGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTC-GCTATGGGATAGTGATTGCGATCGA 153501
||| || || | ||||||| | || ||| | | ||| ||||| ||| ||| |
Sbjct 60313 GGGGCGGTGACGCATGTTGCTGTTGCGAGC-CTCAGGAACGGGGTAGTGGTTGACATCAA 60255
Query 153502 TAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCAT 153561
| || ||||| |||||||| || || || | ||| | | | | ||| |||| |||||| |
Sbjct 60254 TGATCTTGTTCAGGTTGCGAACAACGACCTGAGTGACCTCGTGAAGCTTCTGGAAATCGT 60195
Query 153562 AGG-----TCATT-TCGTCGACGC--GTACGCATCGATTCACGGCAATAGACGCCAGATT 153613
| ||||| | ||| ||| ||| ||| ||||| ||| |||| ||
Sbjct 60194 AAACACCCTCATTGTAGTCAACGAAGGTAGGCAG--------GGCAAGAGAGGCCAAGTT 60143
Query 153614 ACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCA 153673
||||| || ||| |||| | ||| ||||| | ||||| | |||||||||| ||
Sbjct 60142 GCAGACAGCGACCTCATCGGGGGCGCAGTACTCAATAATCTCAGTGCAGAGGTTGGAGCT 60083
Query 153674 TTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCAT 153733
||| || | || | || ||||| ||||| || || || ||| | |||||
Sbjct 60082 GCGGATGGTTCCGAGGTTCTTTTGGTTGCTCTTGCGGTTCGCGGCATCCTTGTAAAGCAT 60023
Query 153734 GTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAA---ACCTATGCAGGTCCTGCGC 153790
| | || ||||||||| || | |||| ||| ||| | || | ||| ||
Sbjct 60022 GAAGGGGTTGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTACCAAAGC---TTCTGGGC 59966
Query 153791 TCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTC 153850
| || ||| |||||||| |||||| ||||||| |||||||||
Sbjct 59965 CTTGATGGTCTTGCGACCCTTGCCCTCGCGCTCGTACTTTTCGTACAAGGCCTCAAACTC 59906
Query 153851 GTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATC 153910
|||||||||||||| || |||||||| |||| | || ||||| || | |||
Sbjct 59905 CTCGCCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGGCACATGAGGGTCCAT----- 59851
Query 153911 GTCGGCGTT------GACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAG 153964
|||||||| ||| | |||||||||||| || | |||||| ||| | ||
Sbjct 59850 -TCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGGGCGAGGAAAAG 59792
Query 153965 GTCGCGCGCCTTGCAATCCTCCGCGCCCATGTT---GCGTTTCAGATTGA-GCACGCTAT 154020
||| || || | |||||| ||| ||| ||| || | | | || | |
Sbjct 59791 GTCACGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCG---CAAGTCCATGAACTCGA- 59736
Query 154021 AGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTTT---CCGC 154077
||| |||||||||||||| |||| ||||| ||| | |||||| |||||| || |
Sbjct 59735 AGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCACCAGGACGCTTGTTGCCAC 59676
Query 154078 CCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTG 154137
|||| ||||||| ||| | | ||||||||||| || | |||||| | |||| | |
Sbjct 59675 CCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACGCCGTTAG 59616
Query 154138 CGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGC 154197
|||||||||||| || | | ||| ||| || | | || |||| | ||
Sbjct 59615 AGGTGCCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCACGGATACGGTGAGCGTTGAGGC 59556
Query 154198 CAATGCCGCC-GCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATGCCG 154256
||||||| || ||| | ||| || || |||||| || || |||||| ||
Sbjct 59555 CAATGCCACCAGCCAT-CTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCC 59497
Query 154257 TCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTT 154316
|| ||| || || | | ||| | ||| || ||| ||| || | | || | | |
Sbjct 59496 TCAATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTG-GCACTGAGGGGT 59438
Query 154317 CCCGCC---GAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGG 154373
||| | |||||| | | |||| ||||| || || | || | ||| | | |
Sbjct 59437 ACCGGCATTGAAAAGTGTGGGGGA--GGCGTGTGTGAAGAACTTGCTGGACATGAGGTTG 59380
Query 154374 TACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGC 154433
|| || |||||| || || | ||| ||||| || |||| ||||| ||||||| |
Sbjct 59379 TAGGTCTCGATGACGCGCTCAACATCGTCGCCCCAGATACCGACTGCGACACGCATGATC 59320
Query 154434 ATGTGCTGCGGACGTTCGGC 154453
||||||||||| | |||||
Sbjct 59319 ATGTGCTGCGGTCTCTCGGC 59300
>seq866
Length=7889
Score = 93.3 bits (102), Expect = 4e-14
Identities = 160/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||| ||| | || | ||| | | | |||||||| || ||||||||||| |
Sbjct 2871 CCACCACGCAGACGGAGGACAAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAC 2812
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || |||||| || || || |||| |||| | ||||| ||||| || ||
Sbjct 2811 AACGTGCGACCGTCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGG 2752
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565
||||| || || || || | || | |||| ||| || | |||||| | || || |
Sbjct 2751 ATACCCTCCTTATC-TTGGATCTTCGACTTAACGTTG-TCAATGGTGTCTGAAGATTCAA 2694
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||||| ||| | || || ||||| ||||| || || || ||||||||
Sbjct 2693 CCTCGAGCGTGATTGTCTTGCCAGTAAGAGTCTTCACGAAGATCTGCAT 2645
Score = 89.7 bits (98), Expect = 5e-13
Identities = 160/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
|||||| || | ||| | || | ||| | | | || ||||| || ||||||||||||||
Sbjct 3100 GCCGCCACGAAGACGGAGGACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCT 3041
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
|| || || || || | || || || | |||| |||||||| ||||| |||||
Sbjct 3040 CAGGGTGCGACCATCTTCCAACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGG 2981
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564
||||| || || || ||| | || | || | ||| || | ||||| | |||||
Sbjct 2980 GATACCCTCCTTATC-CTGAATCTTAGACTTCACGTTG-TCAATCGTGTCTGATGACTCG 2923
Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||||| | || | ||| || ||||||| || || || || ||||||||
Sbjct 2922 ACCTCCAAGGTAATCGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 2873
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496251116233680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |