Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06- 15] 1,819 sequences; 35,034,269 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1170 120 3e-22 seq866 116 4e-21 seq766 91.5 1e-13 >seq1170 Length=97779 Score = 120 bits (132), Expect = 3e-22 Identities = 961/1532 (63%), Gaps = 58/1532 (4%) Strand=Plus/Minus Query 146063 GGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACG 146122 ||||||| ||||| ||||||||||||||||| || | | | || | |||| |||| | | Sbjct 60728 GGTTGACAACCTGGAACTCGCCGGCGAGAACACGGCGCTGGTAGATGTTGGAGGTGTAGG 60669 Query 146123 GCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCA 146182 ||||||| |||||||||| || | ||||| | || | || ||||||||| || | Sbjct 60668 GCTCGAAGCACTCGTTGTTGCCCAAGATCTGGGAAGTGGAGGCAGTAGGCATGGGAGCAA 60609 Query 146183 CCAGCAAAGAGTTTCTCACGCCGTG-TCTTTGAATCTTTTCCCGTAGTTTGGACCAATTC 146241 | |||||| ||| | || ||||| || ||| || | ||| || | ||| | | Sbjct 60608 CAAGCAAACTGTTGCGAACACCGTGCTCCTTG-ATTTGCTCCTTCAGAGAGTCCCAGTCC 60550 Query 146242 CACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTAATGCATAGTGCCGCGGAACAGG 146301 || | | || | ||| | || ||| | ||||||| || | | || || | | Sbjct 60549 CAGA---GGTCAGAGGGCTTGACATTCCACATGTCGTACTGAAGGATACCCTGGGAGATA 60493 Query 146302 GGGCTATTCTCGTACGATTCATAAGGACCGTCGATCTTGGCCAGTT---CGCAGCTAGCT 146358 ||| |||||||| || | ||| || | ||||||||| || | | | Sbjct 60492 GGGGAGCCCTCGTACGTGGAGTAGGTACCCTCCTCCCTGGCCAGTTGAACGGACATGG-- 60435 Query 146359 TCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTAGTTGACGCTC-CTGGCCTCCTC 146417 |||||| | ||| |||||||| ||| | | |||| | || | ||||| Sbjct 60434 -TCAGAGCGGCGTGGTAGATGGTCTCAAAAATCTTCTTATTGA-GATCGCGAGCCTCAGG 60377 Query 146418 GCTGTCGTAGGGGATATCGAGAAGCACAAAGGCGTCGGCGAGACCCTGTATCCCGACACC 146477 ||| | || || ||| | ||||| || || |||||||| | || | ||| Sbjct 60376 AGACTCGAAAGGCATGCGGAGGGCGAGGAAGGCATCAGCAAGACCCTGGACACCAAGACC 60317 Query 146478 AACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCGCCCGCAGTGGGATAGTGGTTGCTGTC 146537 | ||||||||| | |||| ||||| ||| | | | ||| ||||||||| || Sbjct 60316 GATGGGGCGGTGACGCATGTTGCTGTTGCGAGCCTCAGGAACGGGGTAGTGGTTGACATC 60257 Query 146538 GATGATCTTGTTGAGATTACGCACGACAATTTTCGT---CAAACGATTCAGCAGGACATA 146594 ||||||||||| || || || || || | | || | || | | ||| || Sbjct 60256 AATGATCTTGTTCAGGTTGCGAACAACGACCTGAGTGACCTCGTGAAGCTTCTGGAAATC 60197 Query 146595 GTCAAATGTTTTAGTTTTAACGTTGACGCACTTGTTGACGGCGATAGAGGCCAAGTTACA 146654 || ||| | || || || ||| | | | ||| | |||||||||||| || Sbjct 60196 GT-AAACACCCTCATTGTA--GTCAACGAAGGTAGGCAGGGCAAGAGAGGCCAAGTTGCA 60140 Query 146655 TACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATCTCGGCGCAGAGGTTGCTGCACTT 146714 || || ||| || | |||| |||| | |||||| | |||||||||| || Sbjct 60139 GACAGCGACCTCATCGGGGGCGCAGTACTCAATAATCTCAGTGCAGAGGTTGGAGCTGCG 60080 Query 146715 GATGATGCCCAAAtttttttGGTTACTAAACTT---GTTGCAGGGGTCCTTGTAGAGCAT 146771 |||| | || | || |||||||| || ||| ||| || |||||||| ||||| Sbjct 60079 GATGGTTCCGAGGTTCTTTTGGTTGCT---CTTGCGGTTCGCGGCATCCTTGTAAAGCAT 60023 Query 146772 GTACGGTCCCCCGGTTTCGACATTGGTCTCGACGATGAATCTAAACAAATC-TCTGGCCT 146830 | | || ||||| || | | ||||| |||| | | |||| | ||||| | Sbjct 60022 GAAGGGGTTGCCGGTCTCAGTCTGAGCCTCGAGGATG--GCGTACCAAAGCTTCTGGGCC 59965 Query 146831 TTACTTGTCTTTCGTACAGTTTATTC-TTTTCGTATTTCTCGTACAATATTTCAAA--AC 146887 || | ||||| || | | || ||||| || |||||||| ||||| | Sbjct 59964 TTGATGGTCTTGCGACCCTTGCCCTCGCGCTCGTACTTTTCGTACAAGGCCTCAAACTCC 59905 Query 146888 TAGAACCGTACTCGTCGAGGAGGCCGGGATACTTTTTGGGACAGAACAGCGACCATTCTT 146947 | | ||||| ||| |||||||| ||| ||||| || | || | |||||| Sbjct 59904 TCG--CCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGGCACATGAGGGTCCATTCGG 59847 Query 146948 TATTCTCCTTCACGCGTTCCATAAACAAATCGGGAATCCAAAGGCCCAGCATCAAGTCGC 147007 |||| || || | | ||| |||| |||||| ||||| ||| | || | | ||| | Sbjct 59846 CGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGGGCGAGGAAAAGGTCAC 59787 Query 147008 GAGCCTTGGCGTCCTCGGAGCCCATGTTGCGTCTCAAGTTGAGGACATCGTAAATTTCCG 147067 | || | | ||||| ||| ||| | ||||| | || ||| | | || | Sbjct 59786 GGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAACTCGAAGACATCGG 59727 Query 147068 GATGCCAAGGCTCCACGTATGCGGCGAGTGCGCCTTTTCGC---TTACCGCCCTGATCGA 147124 ||||| ||||| | ||| ||||| || || ||| || || ||||| |||| Sbjct 59726 CGTGCCAGGGCTCAAGGTAGATGGCGAAGGCACCAGGACGCTTGTTGCCACCCTGGTCGA 59667 Query 147125 CGTGGCGCACCATGTTATTGAAGACTCGTAACATGGACACGAGGCCGCCGGATTT---TG 147181 ||| ||| | |||| |||||||| || | ||||| | || |||| || | Sbjct 59666 CGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACGCCGTTAGAGGTGCCGT 59607 Query 147182 TGGTGCCG---TTGT-------ATTGAGCGCTGACGCTTTGCACGCTCAGCCCGAGACCT 147231 |||||||| ||| | || || | || | || || | || || | || Sbjct 59606 TGGTGCCGGCAATGTAGGAGCCAGTG-GCACGGATACGGTGAGCGTTGAGGCCAATGCCA 59548 Query 147232 CCGCCCAGATTCGAAATCAAAGCGGA-CTCGTGCAAGGTCTTGTAGATGCCGTCGATGCT 147290 || ||| || || |||| ||| | || || | ||| | |||||| || || ||| Sbjct 59547 CCAGCCATCTTGGAGATCATGGCGCAGGTCTTG-AGGGTGTCGTAGATACCCTCAATGGA 59489 Query 147291 GTCTTCCTTGATGCATTGCAGGAAACACGAACACATTTGGGGACGACACGTGCCCGCCGC 147350 ||||||||| ||| ||||| || ||| ||| ||| || || || || Sbjct 59488 GTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAGGGGTACCGGCATT 59429 Query 147351 AAACAGCGTGGGGCTGGCGTGCGT---GAACGTGCCCAGACTCATCAATTGATACGTTTC 147407 || || |||||| |||||| || |||| || | || ||| | | || || || Sbjct 59428 GAAAAGTGTGGGGGAGGCGTGTGTGAAGAACTTG-CTGGA--CATGAGGTTGTAGGTCTC 59372 Query 147408 AATGGCGCTCATAACGTCATCGCCGTGAATGGCCAGGGCGACGCGCATGAGCATGTGCTG 147467 ||| ||| | ||| || ||||| || | | ||||| ||||||| ||||||||| Sbjct 59371 GATGACGCGCTCAACATCGTCGCCCCAGATACCGACTGCGACACGCATGATCATGTGCTG 59312 Query 147468 GGGTCGTTCCGCAATCACGTCATTGACTTTTAATAGATATCCATTGGTCAGAGTTTTGAA 147527 |||| || |||||| | | | || || | || ||| | |||||| ||||| Sbjct 59311 CGGTCTCTCGGCAATCTTGCCGTCGAGCTTGAGCAGGTATGATCTCTCCAGAGTCTTGAA 59252 Query 147528 ACCAAAGTACTTGTAGTCGTAGTCCCTGTTGT 147559 || ||||| | ||||| | |||| | || || Sbjct 59251 GCCGAAGTATTGGTAGTTGAAGTCGCGGTCGT 59220 >seq866 Length=7889 Score = 116 bits (128), Expect = 4e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| || | ||| ||||| || ||||| ||||| ||| Sbjct 2643 CCACCGCGAAGACGGAGAACCAAGTGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGAG 2584 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || || || || ||||| ||||||| |||||||| || ||||| Sbjct 2583 AGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGAGGA 2524 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| || || ||||| |||| |||| ||| || | | |||||| Sbjct 2523 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTG-TCGATGGTATCAGAAGACTCGAC 2465 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 || | ||| | || |||||||| || || || || Sbjct 2464 CTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 2429 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | |||||||| || || || ||||| ||| Sbjct 2357 CCACCACGAAGGCGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 2298 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || |||||||| |||||| | || | |||||||||||||| || Sbjct 2297 AGGGTGCGGCCGTCCTCAAGCTGTTTGCCAGCGAAAATGAGACGCTGCTGATCGGGGGGA 2238 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 |||||||||||||| || || ||||| |||| |||| ||| || | |||||| Sbjct 2237 ATGCCCTCCTTGTCTTGAATCTTGGACTTGACGTTG-TCGATGGTATCGGATGACTCGAC 2179 Query 127066 TTCGACGGTCACCGTTTTGCCGGT 127089 |||| || | || |||||||| Sbjct 2178 CTCGAGAGTGATGGTCTTGCCGGT 2155 >seq766 Length=50960 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| ||| | ||||| || || ||||| || |||||| ||||| Sbjct 293 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATC 234 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 || |||||||| ||||| || ||||||||||||||| ||| || ||||| | ||| Sbjct 233 AAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 174 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | ||||| | |||||| || | ||| | || || || ||||| || || || ||| Sbjct 173 ATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAAA 114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475489988300560