Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06- 15] 1,819 sequences; 35,034,269 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1170 179 5e-40 seq607 111 2e-19 >seq1170 Length=97779 Score = 179 bits (198), Expect = 5e-40 Identities = 1108/1759 (63%), Gaps = 71/1759 (4%) Strand=Plus/Minus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 || ||||||||||| ||||||||||| || |||||||| || | ||||| || Sbjct 61032 CGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCAGCGAAGTGCATGCTGGTG 60973 Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 115677 | |||| | ||| || | |||| || ||| | ||||| || || |||||| Sbjct 60972 ATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTGAGGGACTGGGACTGGTCAATGAAG 60913 Query 115678 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTG---ATTTCCCACACAGTT 115734 || ||||| || ||||| | || || | | || | |||||||| || || Sbjct 60912 GCACCACGATCGGCAGCCATCTGAA---CAACGGTGCGCTGGGAGATTTCCCAGACGGTC 60856 Query 115735 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCC 115794 |||| || ||| | || | ||||| | ||| || || | || ||| | Sbjct 60855 TTGTACAGAGCCTTGACCTCGGCGGGGATGTTAGGGATGTTCTGAACGGA---ACCGTTC 60799 Query 115795 TTGACCATGAGA---TCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCC 115851 | | | |||| | | |||||| | | ||||| | || || | ||||||| | Sbjct 60798 TCGGCGATGATACGGTTCTTCATGGCATCGGACCACAAGCCCATGTCGACAAGATCCTTC 60739 Query 115852 A----CGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGAT 115907 | | ||| | |||||||| ||||| || ||||| || | | | ||||| Sbjct 60738 AGCAGCCAGGGG----TTGACAACCTGGAACTCGCCGGCGAGAACACGGCGCTGGTAGAT 60683 Query 115908 GTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGT 115967 ||||| ||||| ||||| |||||||| ||||| |||||||| |||| |||||||| || Sbjct 60682 GTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGGGAAGTGGAGGCAGT 60623 Query 115968 GGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAG 116027 |||||||| || | || | |||||||| | ||| | || | || | ||||| || Sbjct 60622 AGGCATGGGAGCAACAAGCAAACTGTTGCGAACACCGTGCTCCTTGATTTGCTCCTTCAG 60563 Query 116028 GGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACC 116087 | ||||||||| || | | || | | |||||| || |||| |||||||| Sbjct 60562 AGAGTCCCAGTCCCAGAGGTCAGAGGGCTTGACATTCCACATGTCGTACTGAAGGATACC 60503 Query 116088 TTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATT---C 116144 ||||| || || ||||| | || || | ||||| || |||| || | Sbjct 60502 CTGGGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTACCCTCCTCCCTGGCCAGTTGAAC 60443 Query 116145 GGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTT 116204 ||| | | | || || ||||| || || ||||||||||| ||| | | Sbjct 60442 GGACATGGTC---AGAGCGGCGTGGTAGATGGTCTCAAAAATCTTCTTATTGAGATCGCG 60386 Query 116205 GGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGAC 116264 ||||| || || || | | ||| | || |||| || ||||| ||||| Sbjct 60385 AGCCTCAGGAGACTCGAAAGGCATGCGGAGGGCGAGGAAGGCATCAGCAAGACCCTGGAC 60326 Query 116265 ACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC---ACGGGATA 116321 ||| || || || ||||| || | ||| || || ||||| ||| ||||| || Sbjct 60325 ACCAAGACCGATGGGGCGGTGACGCATGTTGCTGTTGCGAGC---CTCAGGAACGGGGTA 60269 Query 116322 AAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAG 116381 || ||| || | | | || || || || |||| |||| || ||||| Sbjct 60268 GTGGTTGACATCAATGATCTTGTTCAGGTTGCGAACAACGACCTGAGTGACCTCGTGAAG 60209 Query 116382 CTTTTCGTAATCA-AAACTGCG--AGTCTCTTCATTGACATACTTAGGAAGGGCGATTGA 116438 ||| | | |||| |||| | | | | ||| || | |||| ||||| | || Sbjct 60208 CTTCTGGAAATCGTAAACACCCTCATTGTAGTCAACGA---AGGTAGGCAGGGCAAGAGA 60152 Query 116439 CGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAA 116498 |||| || || |||| | |||||| | |||||| ||||| || || || | Sbjct 60151 GGCCAAGTTGCAGACAGCGACCTCATCGGGGGCGCAGTACTCAATAATCTCAGTGCAGAG 60092 Query 116499 ATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTT 116558 || || || ||||| || | ||||||||| || ||| ||| |||||||| Sbjct 60091 GTTGGAGCTGCGGATGGTTCCGAGGTTCTTTTGGTTGCTCTTGCGGTTCGCGGCATCCTT 60032 Query 116559 GTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CAT 116617 ||| ||||| | || | || ||||| || || | || ||| || || | ||| | | | Sbjct 60031 GTAAAGCATGAAGGGGTTGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTACCAAAGCTT 59972 Query 116618 CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT---CCTC---CTCGTACTTTGTGTAGA 116671 | | | || | ||| ||| || |||| |||| |||||||||| ||| | Sbjct 59971 CTGGGCCTTG----ATGGTCTTG---CGACCCTTGCCCTCGCGCTCGTACTTTTCGTACA 59919 Query 116672 GGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAG 116730 |||||||||||| || || ||| || | || || || || | || || | | Sbjct 59918 AGGCCTCAAACTCCTC-GCCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGGCACATG 59860 Query 116731 AGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCC 116790 || | ||||| | || ||| || | ||||||||| || || ||||||||||| || Sbjct 59859 AGGGTCCATTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGGGCG 59800 Query 116791 GAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAG 116850 ||| || || || || | || || | || || || ||||| |||| || Sbjct 59799 AGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAAC 59740 Query 116851 TCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-AC-----CCCTTGCGA 116904 || | || ||| |||||||| || || ||||| | |||| | || | |||| Sbjct 59739 TCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCACCAGGACGCTTG--- 59683 Query 116905 CGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATA 116964 ||| |||||| || || | || || ||| || || |||||||| ||||||| Sbjct 59682 TTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACG 59623 Query 116965 CCATCAGATTGGCCATTTGTCCCCCGAA--TACGAGACTTGTTGGCTCTGACATCGTGGA 117022 || | ||| ||| || || || || || ||| | |||| | || | ||| Sbjct 59622 CCGTTAGAGGTGCCGTTGGTGCCGGCAATGTAGGAGCC--AGTGGCACGGATACGGTGAG 59565 Query 117023 TGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGT 117082 || | ||||| || || ||| ||| ||||| ||||| | |||| || ||| Sbjct 59564 CGTTGAGGCCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGT 59505 Query 117083 AGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCC 117142 |||| || || || ||||| |||| | ||| ||||||||| |||| || | Sbjct 59504 AGATACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACT 59445 Query 117143 TTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG--GGACAT 117200 || ||||| || ||||| || || || | ||||| ||| | | |||| |||||| Sbjct 59444 GAGGGGTACCGGCATTGAAAAGTGTGGGGGAGGCGTGTGTGA--AGAACTTGCTGGACAT 59387 Query 117201 CTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCG 117260 | ||||||||| | ||| || || || || ||||||| || ||| || Sbjct 59386 GAGGTTGTAGGTCTCGATGACGCGCTCAACATCGTCGCCCCAGATACCGACTGCGACACG 59327 Query 117261 CATAAACATGTATTGGGGT 117279 ||| | ||||| || ||| Sbjct 59326 CATGATCATGTGCTGCGGT 59308 >seq607 Length=5268 Score = 111 bits (122), Expect = 2e-19 Identities = 276/412 (67%), Gaps = 19/412 (5%) Strand=Plus/Plus Query 12705 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 12764 || || ||||| || || | || || | |||||| ||||| | ||| || ||||| Sbjct 3136 TCGAAACGACCGGGACGCATCAGCGCCTTGTCAAGAATATCGGCTCTGTTGGTGCCCGCG 3195 Query 12765 ATGACAACGATGCCCG-TCTCGT-TATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGA 12822 | |||||||| || | ||| | ||| ||| || |||||||| ||||||| || || | Sbjct 3196 AGGACAACGA--CCTGCTCTTGGGTATTGAAACCGTCCATCTCTGTCAAGATCTGGTTCA 3253 Query 12823 TGGTTTGTTCACGTTCATCATTCGCGGGCATACCAC--CCGCACTGCGTTGCTT-ACCGA 12879 ||| ||| || |||||||| || ||| | || ||| ||| | ||| | Sbjct 3254 GAGTTGCTTCGCGCTCATCATTGCCGCCCATGCGGTTTCCTTCCTGTCTTGATCGACCAA 3313 Query 12880 CGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGA 12939 |||||| ||||| |||||||| | |||||| || | | | ||||| | |||| | Sbjct 3314 TGGCGTCGATTTCATCAATGAAGATGATACAGGGGGCACTCTTGCGGGCGTTTGCAAACA 3373 Query 12940 TATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAA- 12998 ||||||||||| | ||| ||||| ||||||||||| || || | ||||| Sbjct 3374 AGTCTCGCACTCTTGAAGGACCAACACCGACAAACATCTCGACGAACT------CGGAAC 3427 Query 12999 CATTG-----GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 13053 || || || |||||| || || || || ||| |||| ||| || | |||| Sbjct 3428 CACTGACGCTGAAGAAGGGCACACCAGACTCGCCAGCGGTGGCCTTGGCAAGCAACGTCT 3487 Query 13054 TCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC 13105 | || || || || || ||||| | ||||||||| || ||| | || || Sbjct 3488 TACCGGTTCCAGGAGGTCCGGCGAGGATGGCACCACGAGGAATCTTTGCGCC 3539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613493250380040