Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06-
15] 1,819 sequences; 35,034,269 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq1170 179 5e-40
seq607 111 2e-19
>seq1170
Length=97779
Score = 179 bits (198), Expect = 5e-40
Identities = 1108/1759 (63%), Gaps = 71/1759 (4%)
Strand=Plus/Minus
Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617
|| ||||||||||| ||||||||||| || |||||||| || | ||||| ||
Sbjct 61032 CGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCAGCGAAGTGCATGCTGGTG 60973
Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 115677
| |||| | ||| || | |||| || ||| | ||||| || || ||||||
Sbjct 60972 ATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTGAGGGACTGGGACTGGTCAATGAAG 60913
Query 115678 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTG---ATTTCCCACACAGTT 115734
|| ||||| || ||||| | || || | | || | |||||||| || ||
Sbjct 60912 GCACCACGATCGGCAGCCATCTGAA---CAACGGTGCGCTGGGAGATTTCCCAGACGGTC 60856
Query 115735 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCC 115794
|||| || ||| | || | ||||| | ||| || || | || ||| |
Sbjct 60855 TTGTACAGAGCCTTGACCTCGGCGGGGATGTTAGGGATGTTCTGAACGGA---ACCGTTC 60799
Query 115795 TTGACCATGAGA---TCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCC 115851
| | | |||| | | |||||| | | ||||| | || || | ||||||| |
Sbjct 60798 TCGGCGATGATACGGTTCTTCATGGCATCGGACCACAAGCCCATGTCGACAAGATCCTTC 60739
Query 115852 A----CGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGAT 115907
| | ||| | |||||||| ||||| || ||||| || | | | |||||
Sbjct 60738 AGCAGCCAGGGG----TTGACAACCTGGAACTCGCCGGCGAGAACACGGCGCTGGTAGAT 60683
Query 115908 GTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGT 115967
||||| ||||| ||||| |||||||| ||||| |||||||| |||| |||||||| ||
Sbjct 60682 GTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGGGAAGTGGAGGCAGT 60623
Query 115968 GGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAG 116027
|||||||| || | || | |||||||| | ||| | || | || | ||||| ||
Sbjct 60622 AGGCATGGGAGCAACAAGCAAACTGTTGCGAACACCGTGCTCCTTGATTTGCTCCTTCAG 60563
Query 116028 GGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACC 116087
| ||||||||| || | | || | | |||||| || |||| ||||||||
Sbjct 60562 AGAGTCCCAGTCCCAGAGGTCAGAGGGCTTGACATTCCACATGTCGTACTGAAGGATACC 60503
Query 116088 TTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATT---C 116144
||||| || || ||||| | || || | ||||| || |||| || |
Sbjct 60502 CTGGGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTACCCTCCTCCCTGGCCAGTTGAAC 60443
Query 116145 GGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTT 116204
||| | | | || || ||||| || || ||||||||||| ||| | |
Sbjct 60442 GGACATGGTC---AGAGCGGCGTGGTAGATGGTCTCAAAAATCTTCTTATTGAGATCGCG 60386
Query 116205 GGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGAC 116264
||||| || || || | | ||| | || |||| || ||||| |||||
Sbjct 60385 AGCCTCAGGAGACTCGAAAGGCATGCGGAGGGCGAGGAAGGCATCAGCAAGACCCTGGAC 60326
Query 116265 ACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC---ACGGGATA 116321
||| || || || ||||| || | ||| || || ||||| ||| ||||| ||
Sbjct 60325 ACCAAGACCGATGGGGCGGTGACGCATGTTGCTGTTGCGAGC---CTCAGGAACGGGGTA 60269
Query 116322 AAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAG 116381
|| ||| || | | | || || || || |||| |||| || |||||
Sbjct 60268 GTGGTTGACATCAATGATCTTGTTCAGGTTGCGAACAACGACCTGAGTGACCTCGTGAAG 60209
Query 116382 CTTTTCGTAATCA-AAACTGCG--AGTCTCTTCATTGACATACTTAGGAAGGGCGATTGA 116438
||| | | |||| |||| | | | | ||| || | |||| ||||| | ||
Sbjct 60208 CTTCTGGAAATCGTAAACACCCTCATTGTAGTCAACGA---AGGTAGGCAGGGCAAGAGA 60152
Query 116439 CGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAA 116498
|||| || || |||| | |||||| | |||||| ||||| || || || |
Sbjct 60151 GGCCAAGTTGCAGACAGCGACCTCATCGGGGGCGCAGTACTCAATAATCTCAGTGCAGAG 60092
Query 116499 ATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTT 116558
|| || || ||||| || | ||||||||| || ||| ||| ||||||||
Sbjct 60091 GTTGGAGCTGCGGATGGTTCCGAGGTTCTTTTGGTTGCTCTTGCGGTTCGCGGCATCCTT 60032
Query 116559 GTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CAT 116617
||| ||||| | || | || ||||| || || | || ||| || || | ||| | | |
Sbjct 60031 GTAAAGCATGAAGGGGTTGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTACCAAAGCTT 59972
Query 116618 CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT---CCTC---CTCGTACTTTGTGTAGA 116671
| | | || | ||| ||| || |||| |||| |||||||||| ||| |
Sbjct 59971 CTGGGCCTTG----ATGGTCTTG---CGACCCTTGCCCTCGCGCTCGTACTTTTCGTACA 59919
Query 116672 GGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAG 116730
|||||||||||| || || ||| || | || || || || | || || | |
Sbjct 59918 AGGCCTCAAACTCCTC-GCCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGGCACATG 59860
Query 116731 AGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCC 116790
|| | ||||| | || ||| || | ||||||||| || || ||||||||||| ||
Sbjct 59859 AGGGTCCATTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGGGCG 59800
Query 116791 GAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAG 116850
||| || || || || | || || | || || || ||||| |||| ||
Sbjct 59799 AGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAAC 59740
Query 116851 TCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-AC-----CCCTTGCGA 116904
|| | || ||| |||||||| || || ||||| | |||| | || | ||||
Sbjct 59739 TCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCACCAGGACGCTTG--- 59683
Query 116905 CGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATA 116964
||| |||||| || || | || || ||| || || |||||||| |||||||
Sbjct 59682 TTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACG 59623
Query 116965 CCATCAGATTGGCCATTTGTCCCCCGAA--TACGAGACTTGTTGGCTCTGACATCGTGGA 117022
|| | ||| ||| || || || || || ||| | |||| | || | |||
Sbjct 59622 CCGTTAGAGGTGCCGTTGGTGCCGGCAATGTAGGAGCC--AGTGGCACGGATACGGTGAG 59565
Query 117023 TGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGT 117082
|| | ||||| || || ||| ||| ||||| ||||| | |||| || |||
Sbjct 59564 CGTTGAGGCCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGT 59505
Query 117083 AGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCC 117142
|||| || || || ||||| |||| | ||| ||||||||| |||| || |
Sbjct 59504 AGATACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACT 59445
Query 117143 TTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG--GGACAT 117200
|| ||||| || ||||| || || || | ||||| ||| | | |||| ||||||
Sbjct 59444 GAGGGGTACCGGCATTGAAAAGTGTGGGGGAGGCGTGTGTGA--AGAACTTGCTGGACAT 59387
Query 117201 CTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCG 117260
| ||||||||| | ||| || || || || ||||||| || ||| ||
Sbjct 59386 GAGGTTGTAGGTCTCGATGACGCGCTCAACATCGTCGCCCCAGATACCGACTGCGACACG 59327
Query 117261 CATAAACATGTATTGGGGT 117279
||| | ||||| || |||
Sbjct 59326 CATGATCATGTGCTGCGGT 59308
>seq607
Length=5268
Score = 111 bits (122), Expect = 2e-19
Identities = 276/412 (67%), Gaps = 19/412 (5%)
Strand=Plus/Plus
Query 12705 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 12764
|| || ||||| || || | || || | |||||| ||||| | ||| || |||||
Sbjct 3136 TCGAAACGACCGGGACGCATCAGCGCCTTGTCAAGAATATCGGCTCTGTTGGTGCCCGCG 3195
Query 12765 ATGACAACGATGCCCG-TCTCGT-TATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGA 12822
| |||||||| || | ||| | ||| ||| || |||||||| ||||||| || || |
Sbjct 3196 AGGACAACGA--CCTGCTCTTGGGTATTGAAACCGTCCATCTCTGTCAAGATCTGGTTCA 3253
Query 12823 TGGTTTGTTCACGTTCATCATTCGCGGGCATACCAC--CCGCACTGCGTTGCTT-ACCGA 12879
||| ||| || |||||||| || ||| | || ||| ||| | ||| |
Sbjct 3254 GAGTTGCTTCGCGCTCATCATTGCCGCCCATGCGGTTTCCTTCCTGTCTTGATCGACCAA 3313
Query 12880 CGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGA 12939
|||||| ||||| |||||||| | |||||| || | | | ||||| | |||| |
Sbjct 3314 TGGCGTCGATTTCATCAATGAAGATGATACAGGGGGCACTCTTGCGGGCGTTTGCAAACA 3373
Query 12940 TATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAA- 12998
||||||||||| | ||| ||||| ||||||||||| || || | |||||
Sbjct 3374 AGTCTCGCACTCTTGAAGGACCAACACCGACAAACATCTCGACGAACT------CGGAAC 3427
Query 12999 CATTG-----GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 13053
|| || || |||||| || || || || ||| |||| ||| || | ||||
Sbjct 3428 CACTGACGCTGAAGAAGGGCACACCAGACTCGCCAGCGGTGGCCTTGGCAAGCAACGTCT 3487
Query 13054 TCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC 13105
| || || || || || ||||| | ||||||||| || ||| | || ||
Sbjct 3488 TACCGGTTCCAGGAGGTCCGGCGAGGATGGCACCACGAGGAATCTTTGCGCC 3539
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613493250380040
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