Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06- 15] 1,819 sequences; 35,034,269 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1170 136 6e-27 >seq1170 Length=97779 Score = 136 bits (150), Expect = 6e-27 Identities = 453/688 (66%), Gaps = 20/688 (3%) Strand=Plus/Minus Query 205060 CTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACA 205119 |||||| ||| ||||| ||| |||| || ||||| ||| ||| || || || Sbjct 59935 CTCGTACTTTTCGTACAAGGCCTCAAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCA 59876 Query 205120 TTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTC---ACCCTCTCCATAAACAG 205176 | ||||| ||||| || | ||| || | ||| ||| || |||| ||| ||||| Sbjct 59875 CTCGTTGGGGCACATGAGGGTCCAT-TCGG--CGTTCTTCTCGACTCTCTTCATGAACAG 59819 Query 205177 GTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTT 205236 ||| |||||| ||| || || || |||||||| | | | || | || |||| Sbjct 59818 ATCGGGGATCCAGAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCGTGGTT 59759 Query 205237 CTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCA 205295 ||| |||||||| || || | | ||||||||||| ||||| | | | ||| | Sbjct 59758 CTTGCGCAAGTCCATG-AACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGA 59700 Query 205296 TTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTC 205355 || || || | |||||| ||||||||||| || ||||| | |||||| || | Sbjct 59699 AGGCACCAGGACGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACAC 59640 Query 205356 GCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAG 205415 | ||||| || | | ||||| | ||| ||||| |||| | ||| ||||| | Sbjct 59639 GAAGCATGGGAATGACGCCGTTAGAGGTGCCGTTGGTGCCGGCAATGTAGGAGCCAGTGG 59580 Query 205416 CCC--TCACGTTG-GAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGC 205472 | | ||| || | | || |||||| || |||| ||||| |||| ||||| Sbjct 59579 CACGGATACGGTGAGCGTTG---AGGCCAATGCCACCAGCCATCTTGGAGATCATGGCGC 59523 Query 205473 A-CTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTC-ACCAGATA 205530 | ||||| || ||| |||||| || | ||||| || ||| || |||| || || | Sbjct 59522 AGGTCTTG-AGGGTGTCGTAGATACCCTCAATGGAGTCTTCCTTCA-TGTCGACGAGGAA 59465 Query 205531 GCACGAAGCCAGCTTGGCAAAG-TTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGC 205589 ||| |||| |||| ||||| | ||| || || | ||| || |||||| |||||| Sbjct 59464 GCATGAAGACAGC-TGGCACTGAGGGGTACCGGCATTGAAAAGTGTGGGGGAGGCGTGTG 59406 Query 205590 TGAAGCGCTTCTCGCTCAAACACCTGTAGGTCTCCAGCACGCTCTCCAGATCGAAGCCGT 205649 ||||| ||| | || |||||||||| | |||| ||| | |||| ||| Sbjct 59405 TGAAGAACTTGCTGGACATGAGGTTGTAGGTCTCGATGACGCGCTCAACATCGTCGCCCC 59346 Query 205650 GAATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCCATCACCCTCTCGTTCA 205709 ||||| | |||| | ||||| | ||| || |||||||| | | | ||| | Sbjct 59345 AGATACCGACTGCGACACGCATGATCATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCGA 59286 Query 205710 CCTTGAGCAGATAGGCTCTCTCTAGGGT 205737 ||||||||| || | |||||| || || Sbjct 59285 GCTTGAGCAGGTATGATCTCTCCAGAGT 59258 Score = 132 bits (146), Expect = 8e-26 Identities = 455/688 (66%), Gaps = 25/688 (4%) Strand=Plus/Minus Query 203838 TCTTG-TCCACCGTGAACTGAATGGCGTTCACGGCAG--GCCTGCTT-CTCAGATAGTAC 203893 ||||| || || ||||||||||||| | || | || ||||| | | ||| |||||| Sbjct 61077 TCTTGGTCGACGGTGAACTGAATGG-GAGCA--GAAGCTGCCTGAGTACGCAGGTAGTAC 61021 Query 203894 ATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACG 203953 ||||| ||||| || || || ||| || | ||||||| | | |||| || Sbjct 61020 ATGCCCGTCTTGAGACCAAGCTTCCAGCCAGCGAAGTGCATGCTGGTGATCTTGCCCATT 60961 Query 203954 TTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATC 204012 | ||||| |||||| ||||| || |||||| ||||| ||||| ||| || ||||| Sbjct 60960 GTCGGGTCCTTCATGTGGATGTTGAGGGACTGGGACTGGTCAATGAA-GGCACCACGATC 60902 Query 204013 TGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCT 204072 || ||||| | | || ||| ||| || || ||||| || |||||| ||| | | Sbjct 60901 GGCAGCCATCTGAACAACGGTGCGCTGGGAGATTTCCCAGACGGTCTTGTACAGAGCCTT 60842 Query 204073 GGTGT-GTTGAGGCACATCTTCCC-ACGTCCTGATCG-AGCCGTTGTCGGCCATCAGTCT 204129 | | | | || || || | || |||| || | ||||| ||||| || | | Sbjct 60841 GACCTCGGCGGGG---ATGTTAGGGATGTTCTGAACGGAACCGTTCTCGGCGATGATACG 60785 Query 204130 CATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTT 204189 || || | | || ||||| ||||| || || ||| || ||| |||||| Sbjct 60784 GTTCTTCATGGCATCGGACCACAAGCCCATGTCGACAAGATCCTTCAGCAGCCAGGGGTT 60725 Query 204190 GATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTC 204249 || | ||| || || |||| || || | || | | | |||| |||| | || || Sbjct 60724 GACAACCTGGAACTCGCCGGCGAGAACACGGCGCTGGTAGATGTTGGAGGTGTAGGGCTC 60665 Query 204250 GAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAG 204309 ||| |||||||||||| || ||||| | ||| ||| || ||||||||||| | || Sbjct 60664 GAAGCACTCGTTGTTGCCCAAGATCTGGGAAGTGGAGGCAGTAGGCATGGGAGCAACAAG 60605 Query 204310 CAGGGAGTTGCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAGTCGTGCA 204368 || |||||| ||||||| | | || ||| |||||||||| |||||| | Sbjct 60604 CAAACTGTTGCGAACACCGTGCTCCTTGA-TTTGCTCCTTCAGAGAGTCCCAGTCCCAGA 60546 Query 204369 TCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGC 204428 || ||| || || |||||||||| |||||| ||| || || || ||| || Sbjct 60545 GGTCAGAGGGCTTGACATTCCACATGTCGTACTGAAGGATACCCTGGGAGATAGGGGAGC 60486 Query 204429 CCTTGTACGTCGGATAAGGCTGATCCTCTTC---TGCCAGCTTGCAC-GAGGCGGCCATG 204484 ||| |||||| ||| ||| | |||| || ||||| ||| || || || || Sbjct 60485 CCTCGTACGT-GGAGTAGG--TACCCTCCTCCCTGGCCAG-TTGAACGGACATGGTCAGA 60430 Query 204485 GCGTGATAGTACATGGTCTCAAAGATCT 204512 ||| | ||| ||||||||||| |||| Sbjct 60429 GCGGCGTGGTAGATGGTCTCAAAAATCT 60402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795137120158640