Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06-
15] 1,819 sequences; 35,034,269 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq1170 136 6e-27
>seq1170
Length=97779
Score = 136 bits (150), Expect = 6e-27
Identities = 453/688 (66%), Gaps = 20/688 (3%)
Strand=Plus/Minus
Query 205060 CTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACA 205119
|||||| ||| ||||| ||| |||| || ||||| ||| ||| || || ||
Sbjct 59935 CTCGTACTTTTCGTACAAGGCCTCAAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCA 59876
Query 205120 TTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTC---ACCCTCTCCATAAACAG 205176
| ||||| ||||| || | ||| || | ||| ||| || |||| ||| |||||
Sbjct 59875 CTCGTTGGGGCACATGAGGGTCCAT-TCGG--CGTTCTTCTCGACTCTCTTCATGAACAG 59819
Query 205177 GTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTT 205236
||| |||||| ||| || || || |||||||| | | | || | || ||||
Sbjct 59818 ATCGGGGATCCAGAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCGTGGTT 59759
Query 205237 CTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCA 205295
||| |||||||| || || | | ||||||||||| ||||| | | | ||| |
Sbjct 59758 CTTGCGCAAGTCCATG-AACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGA 59700
Query 205296 TTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTC 205355
|| || || | |||||| ||||||||||| || ||||| | |||||| || |
Sbjct 59699 AGGCACCAGGACGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACAC 59640
Query 205356 GCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAG 205415
| ||||| || | | ||||| | ||| ||||| |||| | ||| ||||| |
Sbjct 59639 GAAGCATGGGAATGACGCCGTTAGAGGTGCCGTTGGTGCCGGCAATGTAGGAGCCAGTGG 59580
Query 205416 CCC--TCACGTTG-GAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGC 205472
| | ||| || | | || |||||| || |||| ||||| |||| |||||
Sbjct 59579 CACGGATACGGTGAGCGTTG---AGGCCAATGCCACCAGCCATCTTGGAGATCATGGCGC 59523
Query 205473 A-CTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTC-ACCAGATA 205530
| ||||| || ||| |||||| || | ||||| || ||| || |||| || || |
Sbjct 59522 AGGTCTTG-AGGGTGTCGTAGATACCCTCAATGGAGTCTTCCTTCA-TGTCGACGAGGAA 59465
Query 205531 GCACGAAGCCAGCTTGGCAAAG-TTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGC 205589
||| |||| |||| ||||| | ||| || || | ||| || |||||| ||||||
Sbjct 59464 GCATGAAGACAGC-TGGCACTGAGGGGTACCGGCATTGAAAAGTGTGGGGGAGGCGTGTG 59406
Query 205590 TGAAGCGCTTCTCGCTCAAACACCTGTAGGTCTCCAGCACGCTCTCCAGATCGAAGCCGT 205649
||||| ||| | || |||||||||| | |||| ||| | |||| |||
Sbjct 59405 TGAAGAACTTGCTGGACATGAGGTTGTAGGTCTCGATGACGCGCTCAACATCGTCGCCCC 59346
Query 205650 GAATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCCATCACCCTCTCGTTCA 205709
||||| | |||| | ||||| | ||| || |||||||| | | | ||| |
Sbjct 59345 AGATACCGACTGCGACACGCATGATCATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCGA 59286
Query 205710 CCTTGAGCAGATAGGCTCTCTCTAGGGT 205737
||||||||| || | |||||| || ||
Sbjct 59285 GCTTGAGCAGGTATGATCTCTCCAGAGT 59258
Score = 132 bits (146), Expect = 8e-26
Identities = 455/688 (66%), Gaps = 25/688 (4%)
Strand=Plus/Minus
Query 203838 TCTTG-TCCACCGTGAACTGAATGGCGTTCACGGCAG--GCCTGCTT-CTCAGATAGTAC 203893
||||| || || ||||||||||||| | || | || ||||| | | ||| ||||||
Sbjct 61077 TCTTGGTCGACGGTGAACTGAATGG-GAGCA--GAAGCTGCCTGAGTACGCAGGTAGTAC 61021
Query 203894 ATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACG 203953
||||| ||||| || || || ||| || | ||||||| | | |||| ||
Sbjct 61020 ATGCCCGTCTTGAGACCAAGCTTCCAGCCAGCGAAGTGCATGCTGGTGATCTTGCCCATT 60961
Query 203954 TTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATC 204012
| ||||| |||||| ||||| || |||||| ||||| ||||| ||| || |||||
Sbjct 60960 GTCGGGTCCTTCATGTGGATGTTGAGGGACTGGGACTGGTCAATGAA-GGCACCACGATC 60902
Query 204013 TGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCT 204072
|| ||||| | | || ||| ||| || || ||||| || |||||| ||| | |
Sbjct 60901 GGCAGCCATCTGAACAACGGTGCGCTGGGAGATTTCCCAGACGGTCTTGTACAGAGCCTT 60842
Query 204073 GGTGT-GTTGAGGCACATCTTCCC-ACGTCCTGATCG-AGCCGTTGTCGGCCATCAGTCT 204129
| | | | || || || | || |||| || | ||||| ||||| || | |
Sbjct 60841 GACCTCGGCGGGG---ATGTTAGGGATGTTCTGAACGGAACCGTTCTCGGCGATGATACG 60785
Query 204130 CATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTT 204189
|| || | | || ||||| ||||| || || ||| || ||| ||||||
Sbjct 60784 GTTCTTCATGGCATCGGACCACAAGCCCATGTCGACAAGATCCTTCAGCAGCCAGGGGTT 60725
Query 204190 GATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTC 204249
|| | ||| || || |||| || || | || | | | |||| |||| | || ||
Sbjct 60724 GACAACCTGGAACTCGCCGGCGAGAACACGGCGCTGGTAGATGTTGGAGGTGTAGGGCTC 60665
Query 204250 GAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAG 204309
||| |||||||||||| || ||||| | ||| ||| || ||||||||||| | ||
Sbjct 60664 GAAGCACTCGTTGTTGCCCAAGATCTGGGAAGTGGAGGCAGTAGGCATGGGAGCAACAAG 60605
Query 204310 CAGGGAGTTGCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAGTCGTGCA 204368
|| |||||| ||||||| | | || ||| |||||||||| |||||| |
Sbjct 60604 CAAACTGTTGCGAACACCGTGCTCCTTGA-TTTGCTCCTTCAGAGAGTCCCAGTCCCAGA 60546
Query 204369 TCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGC 204428
|| ||| || || |||||||||| |||||| ||| || || || ||| ||
Sbjct 60545 GGTCAGAGGGCTTGACATTCCACATGTCGTACTGAAGGATACCCTGGGAGATAGGGGAGC 60486
Query 204429 CCTTGTACGTCGGATAAGGCTGATCCTCTTC---TGCCAGCTTGCAC-GAGGCGGCCATG 204484
||| |||||| ||| ||| | |||| || ||||| ||| || || || ||
Sbjct 60485 CCTCGTACGT-GGAGTAGG--TACCCTCCTCCCTGGCCAG-TTGAACGGACATGGTCAGA 60430
Query 204485 GCGTGATAGTACATGGTCTCAAAGATCT 204512
||| | ||| ||||||||||| ||||
Sbjct 60429 GCGGCGTGGTAGATGGTCTCAAAAATCT 60402
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795137120158640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |