Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06-
15] 1,819 sequences; 35,034,269 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq766 138 1e-27
seq866 132 5e-26
>seq766
Length=50960
Score = 138 bits (152), Expect = 1e-27
Identities = 139/181 (77%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463
|||| ||||| ||||||||||| || ||||| |||| |||||||||||||| ||||| |
Sbjct 295 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGA 236
Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523
|||||||||||||||||| || | || |||||||||| |||||| ||||| |
Sbjct 235 TCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 176
Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583
| | ||||||| || || || || | || ||||| || |||||||| || || || |
Sbjct 175 CGATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 116
Query 46584 A 46584
|
Sbjct 115 A 115
>seq866
Length=7889
Score = 132 bits (146), Expect = 5e-26
Identities = 157/210 (75%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|| ||||||| ||| |||||| ||||| |||||||| || | ||||| |||| ||
Sbjct 2853 ACAAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAACGTGCGACCGTCCTCA 2794
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
|||||||| |||||||| ||||||||||||||||||| || | | |||||| || |
Sbjct 2793 AGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATACCCTCCTTATCTTGG 2734
Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563
|||||| ||| | ||| | | | ||||| ||||| || || | |||||| || ||
Sbjct 2733 ATCTTCGACTT-AACGTTGTCAATGGTGTCTGAAGATTCAACCTCGAGCGTGATTGTCTT 2675
Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||| || || || || || ||||| |||||
Sbjct 2674 GCCAGTAAGAGTCTTCACGAAGATCTGCAT 2645
Score = 95.1 bits (104), Expect = 1e-14
Identities = 124/169 (73%), Gaps = 2/169 (1%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| || ||||| |||| || ||||| ||||| |||||
Sbjct 2322 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGTTTGCCAGCGAA 2263
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | |||||||| |||| || | || ||||||||| ||||| ||||| |||
Sbjct 2262 AATGAGACGCTGCTGATCGGGGGGAATGCCCTCCTTGTCTTGAATCTTGGACTTGA-CGT 2204
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569
| | | || ||| || || || || | |||||||| ||||| ||
Sbjct 2203 TGTCGATGGTATCGGATGACTCGACCTCGAGAGTGATGGTCTTGCCGGT 2155
Score = 95.1 bits (104), Expect = 1e-14
Identities = 131/181 (72%), Gaps = 2/181 (1%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| || || ||||||||||| || ||||| | || || || |||||||| || ||
Sbjct 2608 CTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAA 2549
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||| ||||||||||| | || | || |||||||||| ||||| ||||| |||
Sbjct 2548 GATCAAACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGA-CGT 2490
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580
| | | || || || || || || | |||||||| ||||| || || || || |
Sbjct 2489 TGTCGATGGTATCAGAAGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGA 2430
Query 46581 C 46581
|
Sbjct 2429 C 2429
Score = 91.5 bits (100), Expect = 2e-13
Identities = 137/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| ||||| ||||||||| || ||||| | || || | |||||| || |||||
Sbjct 3063 TCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCCAACTGCTTTCCAGCGAAG 3004
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
|| | ||||||||||||| || | | |||||| ||| ||||| ||| | |||
Sbjct 3003 ATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTATCCTGAATCTTAGACTTCA-CGTT 2945
Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | |||||| || || || |||| || || || ||||| |||| ||| || ||
Sbjct 2944 GTCAATCGTGTCTGATGACTCGACCTCCAAGGTAATCGTCTTGCCAGTCAACGTCTTCAC 2885
Query 46582 AAAGATTTGCAT 46593
||||| |||||
Sbjct 2884 GAAGATCTGCAT 2873
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565225547891880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |