Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06-
15] 1,819 sequences; 35,034,269 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq866 127 2e-24
seq766 111 2e-19
>seq866
Length=7889
Score = 127 bits (140), Expect = 2e-24
Identities = 145/192 (76%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326
|| ||||| |||||||| |||| |||||| | |||| | | | | |||| | ||
Sbjct 2155 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCATCCGATACCATCGACAACG-TCAAGTC 2213
Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386
|| || | ||||| ||||| |||||| |||| || ||||| ||||||| ||| |||||
Sbjct 2214 CAAGATTCAAGACAAGGAGGGCATTCCCCCCGATCAGCAGCGTCTCATTTTCGCTGGCAA 2273
Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446
|||||| || |||| ||||||||| ||||||||||||||| ||||| | || || ||
Sbjct 2274 ACAGCTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCTACCCTTCA 2333
Query 38447 TTTGGTGCTGCG 38458
||||| || ||
Sbjct 2334 CTTGGTTCTCCG 2345
Score = 111 bits (122), Expect = 2e-19
Identities = 164/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || ||| | || ||||| || || ||| | || |||||| | |
Sbjct 2873 ATGCAGATCTTCGTGAAGACGTTGACTGGCAAGACGATTACCTTGGAGGTCGAGTCATCA 2932
Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | || |||| | || || || | || || ||||| || || |||||||
Sbjct 2933 GACACGATTGACAACG-TGAAGTCTAAGATTCAGGATAAGGAGGGTATCCCTCCCGACCA 2991
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || || | ||| || || ||| |||| || | |||||||| | |||||||||
Sbjct 2992 GCAGCGTCTTATCTTCGCTGGAAAGCAGTTGGAAGATGGTCGCACCCTGAGCGACTACAA 3051
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472
|||||| |||||| | || || ||| | || || ||| | | |||||||
Sbjct 3052 CATCCAGAAGGAATCCACCCTTCATCTCGTCCTCCGTCTTCGTGGCGGCC 3101
Score = 100 bits (110), Expect = 3e-16
Identities = 148/207 (71%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313
|||| || || ||||| ||||| ||||||||| | || |||||| | | || | | |
Sbjct 2427 TCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCTTCTGATACCATCG 2486
Query 38314 A-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| |||| | || || || | ||||| ||||| ||||| | ||||| ||||| |
Sbjct 2487 ACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAGCAGCGTTTG 2545
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|| | || ||||| || || || || | ||||||||| |||||||||||| || |||
Sbjct 2546 ATCTTTGCTGGCAAGCAACTTGAGGATGGCCGCACCCTCTCCGACTACAACATTCAGAAG 2605
Query 38433 GAAGCGACGCTGCATTTGGTGCTGCGT 38459
|| | ||||| || ||||| || |||
Sbjct 2606 GAGTCCACGCTCCACTTGGTTCTCCGT 2632
Score = 98.7 bits (108), Expect = 1e-15
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || || ||||| || ||||| |||| || || | |
Sbjct 2645 ATGCAGATCTTCGTGAAGACTCTTACTGGCAAGACAATCACGCTCGAGGTTGAATCTTCA 2704
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| |||| || |||| || || ||||| || ||| |||||||
Sbjct 2705 GACACCATTGACAACG-TTAAGTCGAAGATCCAAGATAAGGAGGGTATCCCCCCCGACCA 2763
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| | || | ||| || || ||||| || |||| ||||| | ||||||||
Sbjct 2764 GCAGCGCTTGATCTTCGCCGGAAAGCAGCTTGAGGACGGTCGCACGTTGTCGGACTACAA 2823
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||| ||||| | || |||||| | || || ||| || | || ||
Sbjct 2824 CATCCAGAAGGAGTCTACCCTGCATCTTGTCCTCCGTCTGCGTGGTGG 2871
>seq766
Length=50960
Score = 111 bits (122), Expect = 2e-19
Identities = 133/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || ||||| || ||||| ||| | || |||||| || |||||| |
Sbjct 115 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCCGACACGATC 174
Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| | | || || |||| ||||| ||||| || ||| ||||||| ||||| |
Sbjct 175 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTTG 234
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|| | ||| ||||| ||||| || |||| ||||||||| ||||||||||||||| |||
Sbjct 235 ATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAG 294
Query 38433 G 38433
|
Sbjct 295 G 295
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500161427320960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |