Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06- 15] 1,819 sequences; 35,034,269 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq866 127 2e-24 seq766 111 2e-19 >seq866 Length=7889 Score = 127 bits (140), Expect = 2e-24 Identities = 145/192 (76%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326 || ||||| |||||||| |||| |||||| | |||| | | | | |||| | || Sbjct 2155 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCATCCGATACCATCGACAACG-TCAAGTC 2213 Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386 || || | ||||| ||||| |||||| |||| || ||||| ||||||| ||| ||||| Sbjct 2214 CAAGATTCAAGACAAGGAGGGCATTCCCCCCGATCAGCAGCGTCTCATTTTCGCTGGCAA 2273 Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 |||||| || |||| ||||||||| ||||||||||||||| ||||| | || || || Sbjct 2274 ACAGCTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCTACCCTTCA 2333 Query 38447 TTTGGTGCTGCG 38458 ||||| || || Sbjct 2334 CTTGGTTCTCCG 2345 Score = 111 bits (122), Expect = 2e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||| | || ||||| || || ||| | || |||||| | | Sbjct 2873 ATGCAGATCTTCGTGAAGACGTTGACTGGCAAGACGATTACCTTGGAGGTCGAGTCATCA 2932 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || |||| | || || || | || || ||||| || || ||||||| Sbjct 2933 GACACGATTGACAACG-TGAAGTCTAAGATTCAGGATAAGGAGGGTATCCCTCCCGACCA 2991 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| || || ||| |||| || | |||||||| | ||||||||| Sbjct 2992 GCAGCGTCTTATCTTCGCTGGAAAGCAGTTGGAAGATGGTCGCACCCTGAGCGACTACAA 3051 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 |||||| |||||| | || || ||| | || || ||| | | ||||||| Sbjct 3052 CATCCAGAAGGAATCCACCCTTCATCTCGTCCTCCGTCTTCGTGGCGGCC 3101 Score = 100 bits (110), Expect = 3e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313 |||| || || ||||| ||||| ||||||||| | || |||||| | | || | | | Sbjct 2427 TCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCTTCTGATACCATCG 2486 Query 38314 A-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | |||| | || || || | ||||| ||||| ||||| | ||||| ||||| | Sbjct 2487 ACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAGCAGCGTTTG 2545 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | || ||||| || || || || | ||||||||| |||||||||||| || ||| Sbjct 2546 ATCTTTGCTGGCAAGCAACTTGAGGATGGCCGCACCCTCTCCGACTACAACATTCAGAAG 2605 Query 38433 GAAGCGACGCTGCATTTGGTGCTGCGT 38459 || | ||||| || ||||| || ||| Sbjct 2606 GAGTCCACGCTCCACTTGGTTCTCCGT 2632 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| || ||||| |||| || || | | Sbjct 2645 ATGCAGATCTTCGTGAAGACTCTTACTGGCAAGACAATCACGCTCGAGGTTGAATCTTCA 2704 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| |||| || |||| || || ||||| || ||| ||||||| Sbjct 2705 GACACCATTGACAACG-TTAAGTCGAAGATCCAAGATAAGGAGGGTATCCCCCCCGACCA 2763 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | ||| || || ||||| || |||| ||||| | |||||||| Sbjct 2764 GCAGCGCTTGATCTTCGCCGGAAAGCAGCTTGAGGACGGTCGCACGTTGTCGGACTACAA 2823 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || |||||| | || || ||| || | || || Sbjct 2824 CATCCAGAAGGAGTCTACCCTGCATCTTGTCCTCCGTCTGCGTGGTGG 2871 >seq766 Length=50960 Score = 111 bits (122), Expect = 2e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || ||||| || ||||| ||| | || |||||| || |||||| | Sbjct 115 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCCGACACGATC 174 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| || ||| ||||||| ||||| | Sbjct 175 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTTG 234 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| ||||| || |||| ||||||||| ||||||||||||||| ||| Sbjct 235 ATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAG 294 Query 38433 G 38433 | Sbjct 295 G 295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500161427320960