Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06-
15] 1,819 sequences; 35,034,269 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq1295 248 1e-60
seq319 132 6e-26
seq1579 82.4 1e-10
>seq1295
Length=19304
Score = 248 bits (274), Expect = 1e-60
Identities = 481/710 (68%), Gaps = 0/710 (0%)
Strand=Plus/Plus
Query 7022 ATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTC 7081
|||||||| ||||| | || ||||| || || |||||||||||||| || | || ||
Sbjct 13771 ATGGCGGCCTGGACAGCGGCACCGTAGGCAACAGCCTCATCGGGGTTGATGGACTTGTTG 13830
Query 7082 AGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGAT 7141
| || || ||||| || || || || | | | || | ||||| || || ||
Sbjct 13831 GGCTCCTTGCCGTTGAAGTAGTCGGAGATGAGCTTCTGGACACGGGGGATACGGGTGGAA 13890
Query 7142 CCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTT 7201
|| ||||||| ||||| || | || | || || |||| ||| | ||| |||
Sbjct 13891 CCTCCGACCAGGACGATCTCGTGGACCTGGGACTTGTCGACCTTGGCGTCGGTAAGGACA 13950
Query 7202 TTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCA 7261
||||| || | || ||||||| |||| || || ||||| || || |||
Sbjct 13951 CGGTCGACGGGCTGGATGGTAGAGCGGAACAGGTCCTGGCAAAGCTCCTCGAAGCGAGCA 14010
Query 7262 CGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTT 7321
||||| ||||| || ||||| || | || ||| | | || || || || |||| ||
Sbjct 14011 CGGGTGATGGAGGTGTAGAAGTCGATACCCTCGAACAGGGAGTCGATCTCGATGGAGGTC 14070
Query 7322 TGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGG 7381
|| || | ||| || | || ||||| || ||||| || || || || | ||| || |||
Sbjct 14071 TGGGCAGACGAGGACAGAGTGCGCTTGGCACGCTCGCAAGCGGTGCGAAGACGGCGCAGG 14130
Query 7382 GCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGT 7441
|| || | ||| ||| | || ||||| || || || || ||||| | ||||||
Sbjct 14131 GCGCGGGCGTTGGAGGACAGGTCCTTCTTGTGCTTGCGCTTGAACTCGTTGACGAAGTGG 14190
Query 7442 CGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTG 7501
| ||| | || || || |||||||||||||| || || || ||||| | |||
Sbjct 14191 TTGACGAGACGGTTGTCAAAGTCCTCACCACCCAAGTGAGTGTCACCAGCGGTGGACTTG 14250
Query 7502 ACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGG 7561
|| || || || || | |||||| | | | || ||||| || ||||||||||| ||
Sbjct 14251 ACCTCGAAAATGCCCTCCTCAATGGTCAGAAGAGACACATCGAAAGTACCACCACCAAGA 14310
Query 7562 TCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCC 7621
|| || ||||| ||||| ||| | || ||||| || |||||||| || || ||
Sbjct 14311 TCGAAGATGAGAACGTTGCGCTCGCCCTCGGCCTTCTTGTCAAGACCGTAGGCAATGGCA 14370
Query 7622 GCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCT 7681
|| || || || || || || |||||||| ||| ||||| ||||| | || ||
Sbjct 14371 GCGGCGGTAGGCTCGTTGATGATACGAAGGACGTTGAGGCCGGCAATGAGACCTGCGTCC 14430
Query 7682 TTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGAC 7731
|| || ||||| || || || ||||| |||||||| ||||| || |||||
Sbjct 14431 TTGGTAGCTTGACGCTGGGAGTCGTTGAAGTAGGCGGGGACAGTGACGAC 14480
>seq319
Length=46287
Score = 132 bits (146), Expect = 6e-26
Identities = 226/327 (69%), Gaps = 3/327 (1%)
Strand=Plus/Plus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
|||||||| |||||||||||||| || || || ||||| || ||| || |||| ||
Sbjct 2024 TCGAAATCCTCACCACCCAAGTGGGTGTCACCGGCGGTAGCCAGGACCTCGAAGACGCCC 2083
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
|| ||| | | |||||||| || ||||||||||| ||||| | | || |
Sbjct 2084 TGGTCGATGGACAGAAGAGAAACATCGAAAGTACCACCACCAAGGTCGTAGACGATAATC 2143
Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636
| || |||| | |||| || |||||||| |||||||| || || || || ||
Sbjct 2144 TGGCGCTCACCGTC---GGTCTTGTCAAGACCGTAGGCGATAGCGGCGGCGGTGGGCTCG 2200
Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696
|| | || || ||| ||| || || ||||| | ||||| || || || || ||
Sbjct 2201 TTGACAACGCGGAGAACGTTAAGTCCGGCAATGACACCGGCATCCTTGGTGGCCTGGCGC 2260
Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756
|| ||||| |||||||| ||||| || ||||| |||| || || ||||| || |||
Sbjct 2261 TGGTTGTCGTTGAAGTAGGCGGGGACAGTGACGACGGCGTGGGTCACCTTCTTGCCAAGA 2320
Query 7757 TACGATTCCGCGATATCTTTCATTTTG 7783
|| | || |||| || ||||| |||
Sbjct 2321 TAGGCCTCGGCGACCTCCTTCATCTTG 2347
>seq1579
Length=70017
Score = 82.4 bits (90), Expect = 1e-10
Identities = 221/336 (66%), Gaps = 8/336 (2%)
Strand=Plus/Plus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
|| || || |||||||||||||| || || || ||| | ||||| || |||| ||
Sbjct 9048 TCAAAGTCCTCACCACCCAAGTGGGTGTCACCGTTGGTAGACTTGACCTCGAAGACGCCG 9107
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
| || | | | || | ||| || ||||||||||| || || | | | ||
Sbjct 9108 TTCTGGATCTCGAGGACGGAGATATCGAAAGTACCACCACCAAGATCGTAGACGGCGAC- 9166
Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636
| || ||| | | ||| || |||||||| || | || || || || || ||
Sbjct 9167 -----AACGCGGTCCTCCTCCTTCTCAAGACCGTAGGCAAGGGCGGCGGCAGTGGGCTCG 9221
Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCC-GCATCTTTCGTCGCTTGTCG 7695
|| | | ||| || ||| ||||| ||||| | ||| || || || || || || ||
Sbjct 9222 TTGACGACACGGAGGACGTTGAGGCCGGCAAT-CTGGCCGGCGTCCTTGGTGGCCTGACG 9280
Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755
|| || ||||| |||||||| ||||| || ||||| |||| | |||| ||| |||
Sbjct 9281 CTGGGAGTCGTTGAAGTAGGCAGGGACGGTGACGACGGCGTTCTTGACGGGCTTGGAGAG 9340
Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAAC 7791
|| | || ||| | || ||||| ||| | || ||
Sbjct 9341 GTAGGCCTCGGCGGTCTCCTTCATCTTGTTGAGGAC 9376
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635118358667960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |