Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06- 15] 1,819 sequences; 35,034,269 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1295 248 1e-60 seq319 132 6e-26 seq1579 82.4 1e-10 >seq1295 Length=19304 Score = 248 bits (274), Expect = 1e-60 Identities = 481/710 (68%), Gaps = 0/710 (0%) Strand=Plus/Plus Query 7022 ATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTC 7081 |||||||| ||||| | || ||||| || || |||||||||||||| || | || || Sbjct 13771 ATGGCGGCCTGGACAGCGGCACCGTAGGCAACAGCCTCATCGGGGTTGATGGACTTGTTG 13830 Query 7082 AGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGAT 7141 | || || ||||| || || || || | | | || | ||||| || || || Sbjct 13831 GGCTCCTTGCCGTTGAAGTAGTCGGAGATGAGCTTCTGGACACGGGGGATACGGGTGGAA 13890 Query 7142 CCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTT 7201 || ||||||| ||||| || | || | || || |||| ||| | ||| ||| Sbjct 13891 CCTCCGACCAGGACGATCTCGTGGACCTGGGACTTGTCGACCTTGGCGTCGGTAAGGACA 13950 Query 7202 TTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCA 7261 ||||| || | || ||||||| |||| || || ||||| || || ||| Sbjct 13951 CGGTCGACGGGCTGGATGGTAGAGCGGAACAGGTCCTGGCAAAGCTCCTCGAAGCGAGCA 14010 Query 7262 CGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTT 7321 ||||| ||||| || ||||| || | || ||| | | || || || || |||| || Sbjct 14011 CGGGTGATGGAGGTGTAGAAGTCGATACCCTCGAACAGGGAGTCGATCTCGATGGAGGTC 14070 Query 7322 TGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGG 7381 || || | ||| || | || ||||| || ||||| || || || || | ||| || ||| Sbjct 14071 TGGGCAGACGAGGACAGAGTGCGCTTGGCACGCTCGCAAGCGGTGCGAAGACGGCGCAGG 14130 Query 7382 GCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGT 7441 || || | ||| ||| | || ||||| || || || || ||||| | |||||| Sbjct 14131 GCGCGGGCGTTGGAGGACAGGTCCTTCTTGTGCTTGCGCTTGAACTCGTTGACGAAGTGG 14190 Query 7442 CGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTG 7501 | ||| | || || || |||||||||||||| || || || ||||| | ||| Sbjct 14191 TTGACGAGACGGTTGTCAAAGTCCTCACCACCCAAGTGAGTGTCACCAGCGGTGGACTTG 14250 Query 7502 ACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGG 7561 || || || || || | |||||| | | | || ||||| || ||||||||||| || Sbjct 14251 ACCTCGAAAATGCCCTCCTCAATGGTCAGAAGAGACACATCGAAAGTACCACCACCAAGA 14310 Query 7562 TCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCC 7621 || || ||||| ||||| ||| | || ||||| || |||||||| || || || Sbjct 14311 TCGAAGATGAGAACGTTGCGCTCGCCCTCGGCCTTCTTGTCAAGACCGTAGGCAATGGCA 14370 Query 7622 GCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCT 7681 || || || || || || || |||||||| ||| ||||| ||||| | || || Sbjct 14371 GCGGCGGTAGGCTCGTTGATGATACGAAGGACGTTGAGGCCGGCAATGAGACCTGCGTCC 14430 Query 7682 TTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGAC 7731 || || ||||| || || || ||||| |||||||| ||||| || ||||| Sbjct 14431 TTGGTAGCTTGACGCTGGGAGTCGTTGAAGTAGGCGGGGACAGTGACGAC 14480 >seq319 Length=46287 Score = 132 bits (146), Expect = 6e-26 Identities = 226/327 (69%), Gaps = 3/327 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| |||||||||||||| || || || ||||| || ||| || |||| || Sbjct 2024 TCGAAATCCTCACCACCCAAGTGGGTGTCACCGGCGGTAGCCAGGACCTCGAAGACGCCC 2083 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || ||| | | |||||||| || ||||||||||| ||||| | | || | Sbjct 2084 TGGTCGATGGACAGAAGAGAAACATCGAAAGTACCACCACCAAGGTCGTAGACGATAATC 2143 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 | || |||| | |||| || |||||||| |||||||| || || || || || Sbjct 2144 TGGCGCTCACCGTC---GGTCTTGTCAAGACCGTAGGCGATAGCGGCGGCGGTGGGCTCG 2200 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || | || || ||| ||| || || ||||| | ||||| || || || || || Sbjct 2201 TTGACAACGCGGAGAACGTTAAGTCCGGCAATGACACCGGCATCCTTGGTGGCCTGGCGC 2260 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || ||||| |||||||| ||||| || ||||| |||| || || ||||| || ||| Sbjct 2261 TGGTTGTCGTTGAAGTAGGCGGGGACAGTGACGACGGCGTGGGTCACCTTCTTGCCAAGA 2320 Query 7757 TACGATTCCGCGATATCTTTCATTTTG 7783 || | || |||| || ||||| ||| Sbjct 2321 TAGGCCTCGGCGACCTCCTTCATCTTG 2347 >seq1579 Length=70017 Score = 82.4 bits (90), Expect = 1e-10 Identities = 221/336 (66%), Gaps = 8/336 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || |||||||||||||| || || || ||| | ||||| || |||| || Sbjct 9048 TCAAAGTCCTCACCACCCAAGTGGGTGTCACCGTTGGTAGACTTGACCTCGAAGACGCCG 9107 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || | | | || | ||| || ||||||||||| || || | | | || Sbjct 9108 TTCTGGATCTCGAGGACGGAGATATCGAAAGTACCACCACCAAGATCGTAGACGGCGAC- 9166 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 | || ||| | | ||| || |||||||| || | || || || || || || Sbjct 9167 -----AACGCGGTCCTCCTCCTTCTCAAGACCGTAGGCAAGGGCGGCGGCAGTGGGCTCG 9221 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCC-GCATCTTTCGTCGCTTGTCG 7695 || | | ||| || ||| ||||| ||||| | ||| || || || || || || || Sbjct 9222 TTGACGACACGGAGGACGTTGAGGCCGGCAAT-CTGGCCGGCGTCCTTGGTGGCCTGACG 9280 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || || ||||| |||||||| ||||| || ||||| |||| | |||| ||| ||| Sbjct 9281 CTGGGAGTCGTTGAAGTAGGCAGGGACGGTGACGACGGCGTTCTTGACGGGCTTGGAGAG 9340 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAAC 7791 || | || ||| | || ||||| ||| | || || Sbjct 9341 GTAGGCCTCGGCGGTCTCCTTCATCTTGTTGAGGAC 9376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635118358667960