Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06- 15] 1,819 sequences; 35,034,269 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1170 214 2e-50 seq607 118 1e-21 >seq1170 Length=97779 Score = 214 bits (236), Expect = 2e-50 Identities = 920/1438 (64%), Gaps = 41/1438 (3%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||||| ||||| |||||||| || || ||| |||| || Sbjct 59309 CCGCAGCACATGATCATGCGTGTCGCAGTCGGTATCTGGGGCGACGATGTTGAGCGCGTC 59368 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 | ||||| ||| || |||||| | | |||| ||||| | || || || ||| Sbjct 59369 ATCGAGACCTACAACCTCATGTCCAGCAAGTTCTTCACACACGCCTCCCCCACACTTTTC 59428 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 || || ||||| || ||| |||| || ||||| | | | ||||| || Sbjct 59429 AATGCCGGTACCCCTCAGTGCCAGCTGTCTTCATGCTTCCTCGTCGACATGAAGGAAGAC 59488 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 || || | || || |||| ||| |||| || ||| ||||| ||| ||||||| Sbjct 59489 TCCATTGAGGGTATCTACGACACCCTCAAGACCTGCGCCATGATCTCCAAGATGGCTGGT 59548 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAGGTACAA 111909 || || || | || || | || | |||| | ||| || || || || | Sbjct 59549 GGCATTGGCCTCAACGCTCACCGTATCCGTGCCACT--GGCTCCTACATTGCCGGCACCA 59606 Query 111910 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 111969 | || || | || | ||||| |||||||| || || ||| ||| || ||||| | Sbjct 59607 ACGGCACCTCTAACGGCGTCATTCCCATGCTTCGTGTCTTCAACAACACTGCTCGCTACG 59666 Query 111970 TAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 112023 | |||| | ||| ||||| || | |||| |||| |||||||| |||| Sbjct 59667 TCGACCAGGGTGGCAACAAGCGTCCT---GGTGCCTTCGCCATCTACCTTGAGCCCTGGC 59723 Query 112024 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGT 112083 |||| ||| || | |||||| | || ||||| ||||| || | ||||||| || Sbjct 59724 ACGCCGATGTCTTCGAGTTCATGGACTTGCGCAAGAACCACGGCAAGGAGGAGGTCCGTG 59783 Query 112084 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 112143 ||| || || ||| ||| |||||||| || ||||| |||||||||||||| ||| ||| Sbjct 59784 CCCGTGACCTTTTCCTCGCCCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAGAAGA 59843 Query 112144 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTG 112203 | | | ||| | ||| | || || || || ||||| || | || | || | Sbjct 59844 ACGCCGAATGGACCCTCATGTGCCCCAACGAGTGCCCCGGCCTGGCTGACTGCTACGGCG 59903 Query 112204 AGGAGTTTGAAGCCCTCTACACAAAGTACGAG---GAAG---AAAGTCGGGCGACTGCGA 112257 |||||||||| ||| | ||| |||||||||| || | | |||| ||| | Sbjct 59904 AGGAGTTTGAGGCCTTGTACGAAAAGTACGAGCGCGAGGGCAAGGGTCGCAAGACCATCA 59963 Query 112258 CGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 112317 || |||| || | ||| | || || ||| || |||| || ||||| || | | Sbjct 59964 AGG-CCCAGAAGC-----TTTGGTACGCCATCCTCGAGGCTCAGACTGAGACCGGCAACC 60017 Query 112318 CATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 112377 | | ||||||||||| || ||| |||| ||||| || |||||||| | || | Sbjct 60018 CCTTCATGCTTTACAAGGATGCCGCGAACCGCAAGAGCAACCAAAAGAACCTCGGAACCA 60077 Query 112378 TCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 112437 || || ||||||||||| || || || | || | | | |||||| |||| Sbjct 60078 TCCGCAGCTCCAACCTCTGCACTGAGATTATTGAGTACTGCGCCCCCGATGAGGTCGCTG 60137 Query 112438 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTT- 112496 | || ||| | || || | || || || | | || || | | | | | | ||| Sbjct 60138 TCTGCAACTTGGCCTCTCTTGCCCTGCCTACCTTCGTTGA-CTACA-ATGAGGGTGTTTA 60195 Query 112497 -GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTAT 112555 |||| | || || ||||| || || | || ||||| |||| | || Sbjct 60196 CGATTTCCAGAAGCTTCACGAGGTCACTCAGGTCGTTGTTCGCAACCTGAACAAGATCAT 60255 Query 112556 TGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCC 112612 |||| || |||||||| |||| ||||| || || ||| | ||||| || Sbjct 60256 TGATGTCAACCACTACCCCGTTCCTGAG---GCTCGCAACAGCAACATGCGTCACCGCCC 60312 Query 112613 AATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTT-G 112671 || ||||| |||||||| ||||| || |||| ||| || || || || ||| | Sbjct 60313 CATCGGTCTTGGTGTCCAGGGTCTTGCTGATGCCTTC-CTCGCCCTCCGCATGCCTTTCG 60371 Query 112672 ATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTC 112731 | || || || || ||||| | || |||||||| || || |||||||||| Sbjct 60372 AGTCTCCTGAGGCTCGCGATCTCAATAAGAAGATTTTTGAGACCATCTACCACGCCGCTC 60431 Query 112732 TTGAGGCGAGTTCG--GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTC 112789 ||| | || || | |||| || || ||| | || || | ||||| || Sbjct 60432 -TGA-CCATGTCCGTTCAACTGGCCAGGGAGGAGGGTACCTACTCCACGTACGAGGGCTC 60489 Query 112790 TCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTA 112849 || || || || | ||||| | || |||||| | | || || | || Sbjct 60490 CCCTATCTCCCAGGGTATCCTTCAGTACGACATGTGGAATGTCAAGCCCTCTGACCTCTG 60549 Query 112850 CGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGAT 112909 ||||||||| |||| ||||| | ||||||||| | ||| |||| |||||| | | | Sbjct 60550 GGACTGGGACTCTCTGAAGGAGCAAATCAAGGAGCACGGTGTTCGCAACAGTTTGCTTGT 60609 Query 112910 GGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACC 112969 || || ||||| || |||||||| | || |||||||| || || || ||||| || || Sbjct 60610 TGCTCCCATGCCTACTGCCTCCACTTCCCAGATCTTGGGCAACAACGAGTGCTTCGAGCC 60669 Query 112970 CTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAAC 113027 |||||| | |||||||| | | | | ||||| || ||||| | |||||||| Sbjct 60670 CTACACCTCCAACATCTACCAGCGCCGTGTTCTCGCCGGCGAGTTCCAGGTTGTCAAC 60727 >seq607 Length=5268 Score = 118 bits (130), Expect = 1e-21 Identities = 280/415 (67%), Gaps = 25/415 (6%) Strand=Plus/Plus Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947 || || ||||| || || | ||||| | ||||| ||||| | | || || | ||| Sbjct 3136 TCGAAACGACCGGGACGCATCAGCGCCTTGTCAAGAATATCGGCTCTGTTGGTGCCCGCG 3195 Query 15948 ATGACAACAATACCTGTT--TCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAA 16005 | |||||| | |||| | | | ||| ||||| |||||||||||||| | |||||| | Sbjct 3196 AGGACAACGA--CCTGCTCTTGGGTATTGAAACCGTCCATCTCTGTCAAGATCTGGTTCA 3253 Query 16006 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCCA 16062 |||| ||| || |||||||| | ||| | || | ||| ||| | ||| Sbjct 3254 GAGTTGCTTCGCGCTCATCATTGCCGCCCATGCGGTTTCCTTC-CTGTCTTGATCGACCA 3312 Query 16063 C-GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAG 16121 ||| || || ||||||||||||| ||| || || | | | ||| ||| | |||| Sbjct 3313 ATGGCGTCGATTTCATCAATGAAGATGATACAGGGGGCACTCTTGCGGGCGTTTGCAAAC 3372 Query 16122 AGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 16179 | || || ||| |||| | || ||||| ||||||||||| || || | ||| Sbjct 3373 AAGTCTCG--CACTCTTGAAGGACCAACACCGACAAACATCTCGACGAACT------CGG 3424 Query 16180 AA-CATTG-----GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 16233 || || || || |||||| ||| ||| || || || |||| ||| || | | Sbjct 3425 AACCACTGACGCTGAAGAAGGGCACACCAGACTCGCCAGCGGTGGCCTTGGCAAGCAACG 3484 Query 16234 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288 ||||||| || || || || ||||||| |||||| || |||||||| ||||| Sbjct 3485 TCTTACCGGTTCCAGGAGGTCCGGCGAGGATGGCACCACGAGGAATCTTTGCGCC 3539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620728285869680