Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06-
15] 1,819 sequences; 35,034,269 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq1170 214 2e-50
seq607 118 1e-21
>seq1170
Length=97779
Score = 214 bits (236), Expect = 2e-50
Identities = 920/1438 (64%), Gaps = 41/1438 (3%)
Strand=Plus/Plus
Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671
|| ||| ||||| ||||||| ||||| |||||||| || || ||| |||| ||
Sbjct 59309 CCGCAGCACATGATCATGCGTGTCGCAGTCGGTATCTGGGGCGACGATGTTGAGCGCGTC 59368
Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731
| ||||| ||| || |||||| | | |||| ||||| | || || || |||
Sbjct 59369 ATCGAGACCTACAACCTCATGTCCAGCAAGTTCTTCACACACGCCTCCCCCACACTTTTC 59428
Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791
|| || ||||| || ||| |||| || ||||| | | | ||||| ||
Sbjct 59429 AATGCCGGTACCCCTCAGTGCCAGCTGTCTTCATGCTTCCTCGTCGACATGAAGGAAGAC 59488
Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851
|| || | || || |||| ||| |||| || ||| ||||| ||| |||||||
Sbjct 59489 TCCATTGAGGGTATCTACGACACCCTCAAGACCTGCGCCATGATCTCCAAGATGGCTGGT 59548
Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAGGTACAA 111909
|| || || | || || | || | |||| | ||| || || || || |
Sbjct 59549 GGCATTGGCCTCAACGCTCACCGTATCCGTGCCACT--GGCTCCTACATTGCCGGCACCA 59606
Query 111910 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 111969
| || || | || | ||||| |||||||| || || ||| ||| || ||||| |
Sbjct 59607 ACGGCACCTCTAACGGCGTCATTCCCATGCTTCGTGTCTTCAACAACACTGCTCGCTACG 59666
Query 111970 TAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 112023
| |||| | ||| ||||| || | |||| |||| |||||||| ||||
Sbjct 59667 TCGACCAGGGTGGCAACAAGCGTCCT---GGTGCCTTCGCCATCTACCTTGAGCCCTGGC 59723
Query 112024 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGT 112083
|||| ||| || | |||||| | || ||||| ||||| || | ||||||| ||
Sbjct 59724 ACGCCGATGTCTTCGAGTTCATGGACTTGCGCAAGAACCACGGCAAGGAGGAGGTCCGTG 59783
Query 112084 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 112143
||| || || ||| ||| |||||||| || ||||| |||||||||||||| ||| |||
Sbjct 59784 CCCGTGACCTTTTCCTCGCCCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAGAAGA 59843
Query 112144 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTG 112203
| | | ||| | ||| | || || || || ||||| || | || | || |
Sbjct 59844 ACGCCGAATGGACCCTCATGTGCCCCAACGAGTGCCCCGGCCTGGCTGACTGCTACGGCG 59903
Query 112204 AGGAGTTTGAAGCCCTCTACACAAAGTACGAG---GAAG---AAAGTCGGGCGACTGCGA 112257
|||||||||| ||| | ||| |||||||||| || | | |||| ||| |
Sbjct 59904 AGGAGTTTGAGGCCTTGTACGAAAAGTACGAGCGCGAGGGCAAGGGTCGCAAGACCATCA 59963
Query 112258 CGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 112317
|| |||| || | ||| | || || ||| || |||| || ||||| || | |
Sbjct 59964 AGG-CCCAGAAGC-----TTTGGTACGCCATCCTCGAGGCTCAGACTGAGACCGGCAACC 60017
Query 112318 CATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 112377
| | ||||||||||| || ||| |||| ||||| || |||||||| | || |
Sbjct 60018 CCTTCATGCTTTACAAGGATGCCGCGAACCGCAAGAGCAACCAAAAGAACCTCGGAACCA 60077
Query 112378 TCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 112437
|| || ||||||||||| || || || | || | | | |||||| ||||
Sbjct 60078 TCCGCAGCTCCAACCTCTGCACTGAGATTATTGAGTACTGCGCCCCCGATGAGGTCGCTG 60137
Query 112438 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTT- 112496
| || ||| | || || | || || || | | || || | | | | | | |||
Sbjct 60138 TCTGCAACTTGGCCTCTCTTGCCCTGCCTACCTTCGTTGA-CTACA-ATGAGGGTGTTTA 60195
Query 112497 -GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTAT 112555
|||| | || || ||||| || || | || ||||| |||| | ||
Sbjct 60196 CGATTTCCAGAAGCTTCACGAGGTCACTCAGGTCGTTGTTCGCAACCTGAACAAGATCAT 60255
Query 112556 TGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCC 112612
|||| || |||||||| |||| ||||| || || ||| | ||||| ||
Sbjct 60256 TGATGTCAACCACTACCCCGTTCCTGAG---GCTCGCAACAGCAACATGCGTCACCGCCC 60312
Query 112613 AATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTT-G 112671
|| ||||| |||||||| ||||| || |||| ||| || || || || ||| |
Sbjct 60313 CATCGGTCTTGGTGTCCAGGGTCTTGCTGATGCCTTC-CTCGCCCTCCGCATGCCTTTCG 60371
Query 112672 ATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTC 112731
| || || || || ||||| | || |||||||| || || ||||||||||
Sbjct 60372 AGTCTCCTGAGGCTCGCGATCTCAATAAGAAGATTTTTGAGACCATCTACCACGCCGCTC 60431
Query 112732 TTGAGGCGAGTTCG--GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTC 112789
||| | || || | |||| || || ||| | || || | ||||| ||
Sbjct 60432 -TGA-CCATGTCCGTTCAACTGGCCAGGGAGGAGGGTACCTACTCCACGTACGAGGGCTC 60489
Query 112790 TCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTA 112849
|| || || || | ||||| | || |||||| | | || || | ||
Sbjct 60490 CCCTATCTCCCAGGGTATCCTTCAGTACGACATGTGGAATGTCAAGCCCTCTGACCTCTG 60549
Query 112850 CGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGAT 112909
||||||||| |||| ||||| | ||||||||| | ||| |||| |||||| | | |
Sbjct 60550 GGACTGGGACTCTCTGAAGGAGCAAATCAAGGAGCACGGTGTTCGCAACAGTTTGCTTGT 60609
Query 112910 GGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACC 112969
|| || ||||| || |||||||| | || |||||||| || || || ||||| || ||
Sbjct 60610 TGCTCCCATGCCTACTGCCTCCACTTCCCAGATCTTGGGCAACAACGAGTGCTTCGAGCC 60669
Query 112970 CTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAAC 113027
|||||| | |||||||| | | | | ||||| || ||||| | ||||||||
Sbjct 60670 CTACACCTCCAACATCTACCAGCGCCGTGTTCTCGCCGGCGAGTTCCAGGTTGTCAAC 60727
>seq607
Length=5268
Score = 118 bits (130), Expect = 1e-21
Identities = 280/415 (67%), Gaps = 25/415 (6%)
Strand=Plus/Plus
Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947
|| || ||||| || || | ||||| | ||||| ||||| | | || || | |||
Sbjct 3136 TCGAAACGACCGGGACGCATCAGCGCCTTGTCAAGAATATCGGCTCTGTTGGTGCCCGCG 3195
Query 15948 ATGACAACAATACCTGTT--TCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAA 16005
| |||||| | |||| | | | ||| ||||| |||||||||||||| | |||||| |
Sbjct 3196 AGGACAACGA--CCTGCTCTTGGGTATTGAAACCGTCCATCTCTGTCAAGATCTGGTTCA 3253
Query 16006 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCCA 16062
|||| ||| || |||||||| | ||| | || | ||| ||| | |||
Sbjct 3254 GAGTTGCTTCGCGCTCATCATTGCCGCCCATGCGGTTTCCTTC-CTGTCTTGATCGACCA 3312
Query 16063 C-GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAG 16121
||| || || ||||||||||||| ||| || || | | | ||| ||| | ||||
Sbjct 3313 ATGGCGTCGATTTCATCAATGAAGATGATACAGGGGGCACTCTTGCGGGCGTTTGCAAAC 3372
Query 16122 AGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 16179
| || || ||| |||| | || ||||| ||||||||||| || || | |||
Sbjct 3373 AAGTCTCG--CACTCTTGAAGGACCAACACCGACAAACATCTCGACGAACT------CGG 3424
Query 16180 AA-CATTG-----GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 16233
|| || || || |||||| ||| ||| || || || |||| ||| || | |
Sbjct 3425 AACCACTGACGCTGAAGAAGGGCACACCAGACTCGCCAGCGGTGGCCTTGGCAAGCAACG 3484
Query 16234 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288
||||||| || || || || ||||||| |||||| || |||||||| |||||
Sbjct 3485 TCTTACCGGTTCCAGGAGGTCCGGCGAGGATGGCACCACGAGGAATCTTTGCGCC 3539
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620728285869680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |