Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06-
15] 1,819 sequences; 35,034,269 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq1170 168 8e-37
>seq1170
Length=97779
Score = 168 bits (186), Expect = 8e-37
Identities = 1068/1700 (63%), Gaps = 71/1700 (4%)
Strand=Plus/Minus
Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467
|| || || ||||| ||||| ||||||||| |||||| | | ||||| | |
Sbjct 61032 CGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCAGCGAAGTGCATGCTGGTG 60973
Query 109468 AGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAAT 109527
| ||| | |||||| || ||| | ||| | ||||| ||||| || |||||
Sbjct 60972 ATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTGAGGGACTGGGACTGGTCAATGAAG 60913
Query 109528 CGACCACGATCAGCCGCCATGT---CGATGATACACTTTTGGCTAATTTCCCAGACAGTC 109584
||||||||| || ||||| | | | | | | || || ||||||||||| |||
Sbjct 60912 GCACCACGATCGGCAGCCATCTGAACAACGGTGCGCT---GGGAGATTTCCCAGACGGTC 60856
Query 109585 TTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCC 109644
||||||| | ||||| || |||| |||| |||||| |||| || ||| |
Sbjct 60855 TTGTACAGAGCCTTGACCTCGGCGGGGATGTTAGGGATGTTCTGAACGGA---ACCGTTC 60799
Query 109645 TTCACCATGAGA---TCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCA 109701
| | |||| | | |||||| | | ||||| | || | | ||||| |
Sbjct 60798 TCGGCGATGATACGGTTCTTCATGGCATCGGACCACAAGCCCATGTCGACAAGATCCTTC 60739
Query 109702 ACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTA 109761
| || |||||| || || || || || || || || ||||||||||
Sbjct 60738 AGCAGCCAGGGGTTGACAACCTGGAACTCGCCGGCGAGAACACGGCGCTGGTAGATGTTG 60679
Query 109762 GTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGC 109821
| |||||||| ||||| ||||| |||||||| | ||| || | |||||| || || |||
Sbjct 60678 GAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGGGAAGTGGAGGCAGTAGGC 60619
Query 109822 ATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCG 109881
|||||||| | || | |||||| || | ||| | | ||| | |||| || | |
Sbjct 60618 ATGGGAGCAACAAGCAAACTGTTGCGAACACCGTGCTCCTTGATTTGCTCCTTCAGAGAG 60559
Query 109882 TCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTACA 109941
||||| || | | || | || ||| |||||| || ||||| | |
Sbjct 60558 TCCCAGTCCCAGAGGTCAGAG------GGCTTGACATTCCACATGTCGTACTGAAGGATA 60505
Query 109942 CCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACT-- 109999
|||| | ||| || |||| | | | ||| | ||||| || ||||| |
Sbjct 60504 CCCTGGGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTACCCTCCTCCCTGGCCAGTTGA 60445
Query 110000 -CGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGG 110058
|||| | | || || || || || || ||||||||||| | ||| | |
Sbjct 60444 ACGGACATGGTC---AGAGCGGCGTGGTAGATGGTCTCAAAAATCTTCTTATTGAGATCG 60388
Query 110059 CGAGACTCTTCACAGTCGAAGGGAA----GACCACAAAGAATAAACACATCCGCTAGACC 110114
|||| ||| | | ||||| || | || | | ||| |||| || |||||
Sbjct 60387 CGAGCCTCAGGAGACTCGAAAGGCATGCGGAGGGCGAGGAAGG----CATCAGCAAGACC 60332
Query 110115 CTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGG 110174
||| ||||| ||||| |||||||| || |||||| | ||||| |||||
Sbjct 60331 CTGGACACCAAGACCGATGGGGCGGTGACGCATGTTGCTGTTGCGAGCCTCAGGAACGGG 60272
Query 110175 GTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATG 110234
||| |||| || |||| | || || || || || |||| || ||
Sbjct 60271 GTAGTGGTTGACATCAATGATCTTGTTCAGGTTGCGAACAACGACCTGAGTGACCTCGTG 60212
Query 110235 GAGTTTGTCGTAATCG--AACGTTTTCGTCTCCTTATTGACAT---ATTTGGGGAGAGCA 110289
|| || | | ||||| ||| ||| || | | || | | || || |||
Sbjct 60211 AAGCTTCTGGAAATCGTAAACACC-----CTCATTGTAGTCAACGAAGGTAGGCAGGGCA 60157
Query 110290 ATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTA 110349
| ||| || | ||||| |||| ||| || | || ||| || | ||| || ||
Sbjct 60156 AGAGAGGCCAAGTTGCAGACAGCGACCTCATCGGGGGCGCAGTACTCAATAATCTCAGTG 60097
Query 110350 CACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCA 110409
|| | |||||| || ||| || | |||||| || || ||| ||| |||
Sbjct 60096 CAGAGGTTGGAGCTGCGGATGGTTCCGAGGTTCTTTTGGTTGCTCTTGCGGTTCGCGGCA 60037
Query 110410 TCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCAT 110469
||||| || |||||| | ||| | || || || ||||| | || ||| ||||| | |||
Sbjct 60036 TCCTTGTAAAGCATGAAGGGGTTGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTACCAA 59977
Query 110470 ACATCGGCGGCGGGGACA-GTTGCGTTAGCGAGACCTT--CCTC---CTCGTACTTGGTG 110523
| || | ||| | | || | |||| |||| |||| ||||||||| |
Sbjct 59976 A-----GCTTCTGGGCCTTGATGGTCTTGCGAC-CCTTGCCCTCGCGCTCGTACTTTTCG 59923
Query 110524 TACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAG 110583
|||||| ||||||| |||| ||||| |||| || || || || ||| ||
Sbjct 59922 TACAAGGCCTCAAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGGCAC 59863
Query 110584 AAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATC 110643
| ||||| ||| | | || ||| || |||||||||||||| || || ||||| |
Sbjct 59862 ATGAGGGTCCATTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGG 59803
Query 110644 GCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAA 110703
|| ||||||||||||| ||| |||| || | || ||||| ||| | ||||
Sbjct 59802 GCGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATG 59743
Query 110704 AAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGACG- 110762
|| || | || ||| | |||||| || || || |||| |||| || || | ||||
Sbjct 59742 AACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCACC---AGGACGC 59686
Query 110763 -----ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATA 110817
|| |||||| || ||||| || ||| |||||||| | ||||| |||||
Sbjct 59685 TTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATG 59626
Query 110818 ATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGG 110877
| || | || || || || || ||| ||| | ||||||| || |||
Sbjct 59625 ACGCCGTTAGAGGTGCCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCACGGATACGGTGA 59566
Query 110878 ATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTGAGTGTACC 110936
| | ||||| ||||| ||| ||| || || || ||| |||| || |
Sbjct 59565 GCGTTGAGGCCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCT-TGAGGGTGTC 59507
Query 110937 ATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGG 110996
|| ||||| ||||| || ||| |||| || | | || ||||| ||||||| ||| |
Sbjct 59506 GTAGATACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTG-GC 59448
Query 110997 AC-GAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTG--GGA 111053
|| |||| || || |||||||| ||||| || | || || ||| ||| |||| |||
Sbjct 59447 ACTGAGGGGTACCGGCATTGAAAAGTGTGGGGGAGGCGTGTGTGA--AGAACTTGCTGGA 59390
Query 111054 CATCTTGTTGTATGTGTCGA 111073
||| |||||| || ||||
Sbjct 59389 CATGAGGTTGTAGGTCTCGA 59370
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588962608158200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |