Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06- 15] 1,819 sequences; 35,034,269 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1170 168 8e-37 >seq1170 Length=97779 Score = 168 bits (186), Expect = 8e-37 Identities = 1068/1700 (63%), Gaps = 71/1700 (4%) Strand=Plus/Minus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467 || || || ||||| ||||| ||||||||| |||||| | | ||||| | | Sbjct 61032 CGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCAGCGAAGTGCATGCTGGTG 60973 Query 109468 AGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAAT 109527 | ||| | |||||| || ||| | ||| | ||||| ||||| || ||||| Sbjct 60972 ATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTGAGGGACTGGGACTGGTCAATGAAG 60913 Query 109528 CGACCACGATCAGCCGCCATGT---CGATGATACACTTTTGGCTAATTTCCCAGACAGTC 109584 ||||||||| || ||||| | | | | | | || || ||||||||||| ||| Sbjct 60912 GCACCACGATCGGCAGCCATCTGAACAACGGTGCGCT---GGGAGATTTCCCAGACGGTC 60856 Query 109585 TTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCC 109644 ||||||| | ||||| || |||| |||| |||||| |||| || ||| | Sbjct 60855 TTGTACAGAGCCTTGACCTCGGCGGGGATGTTAGGGATGTTCTGAACGGA---ACCGTTC 60799 Query 109645 TTCACCATGAGA---TCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCA 109701 | | |||| | | |||||| | | ||||| | || | | ||||| | Sbjct 60798 TCGGCGATGATACGGTTCTTCATGGCATCGGACCACAAGCCCATGTCGACAAGATCCTTC 60739 Query 109702 ACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTA 109761 | || |||||| || || || || || || || || |||||||||| Sbjct 60738 AGCAGCCAGGGGTTGACAACCTGGAACTCGCCGGCGAGAACACGGCGCTGGTAGATGTTG 60679 Query 109762 GTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGC 109821 | |||||||| ||||| ||||| |||||||| | ||| || | |||||| || || ||| Sbjct 60678 GAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGGGAAGTGGAGGCAGTAGGC 60619 Query 109822 ATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCG 109881 |||||||| | || | |||||| || | ||| | | ||| | |||| || | | Sbjct 60618 ATGGGAGCAACAAGCAAACTGTTGCGAACACCGTGCTCCTTGATTTGCTCCTTCAGAGAG 60559 Query 109882 TCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTACA 109941 ||||| || | | || | || ||| |||||| || ||||| | | Sbjct 60558 TCCCAGTCCCAGAGGTCAGAG------GGCTTGACATTCCACATGTCGTACTGAAGGATA 60505 Query 109942 CCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACT-- 109999 |||| | ||| || |||| | | | ||| | ||||| || ||||| | Sbjct 60504 CCCTGGGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTACCCTCCTCCCTGGCCAGTTGA 60445 Query 110000 -CGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGG 110058 |||| | | || || || || || || ||||||||||| | ||| | | Sbjct 60444 ACGGACATGGTC---AGAGCGGCGTGGTAGATGGTCTCAAAAATCTTCTTATTGAGATCG 60388 Query 110059 CGAGACTCTTCACAGTCGAAGGGAA----GACCACAAAGAATAAACACATCCGCTAGACC 110114 |||| ||| | | ||||| || | || | | ||| |||| || ||||| Sbjct 60387 CGAGCCTCAGGAGACTCGAAAGGCATGCGGAGGGCGAGGAAGG----CATCAGCAAGACC 60332 Query 110115 CTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGG 110174 ||| ||||| ||||| |||||||| || |||||| | ||||| ||||| Sbjct 60331 CTGGACACCAAGACCGATGGGGCGGTGACGCATGTTGCTGTTGCGAGCCTCAGGAACGGG 60272 Query 110175 GTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATG 110234 ||| |||| || |||| | || || || || || |||| || || Sbjct 60271 GTAGTGGTTGACATCAATGATCTTGTTCAGGTTGCGAACAACGACCTGAGTGACCTCGTG 60212 Query 110235 GAGTTTGTCGTAATCG--AACGTTTTCGTCTCCTTATTGACAT---ATTTGGGGAGAGCA 110289 || || | | ||||| ||| ||| || | | || | | || || ||| Sbjct 60211 AAGCTTCTGGAAATCGTAAACACC-----CTCATTGTAGTCAACGAAGGTAGGCAGGGCA 60157 Query 110290 ATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTA 110349 | ||| || | ||||| |||| ||| || | || ||| || | ||| || || Sbjct 60156 AGAGAGGCCAAGTTGCAGACAGCGACCTCATCGGGGGCGCAGTACTCAATAATCTCAGTG 60097 Query 110350 CACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCA 110409 || | |||||| || ||| || | |||||| || || ||| ||| ||| Sbjct 60096 CAGAGGTTGGAGCTGCGGATGGTTCCGAGGTTCTTTTGGTTGCTCTTGCGGTTCGCGGCA 60037 Query 110410 TCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCAT 110469 ||||| || |||||| | ||| | || || || ||||| | || ||| ||||| | ||| Sbjct 60036 TCCTTGTAAAGCATGAAGGGGTTGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTACCAA 59977 Query 110470 ACATCGGCGGCGGGGACA-GTTGCGTTAGCGAGACCTT--CCTC---CTCGTACTTGGTG 110523 | || | ||| | | || | |||| |||| |||| ||||||||| | Sbjct 59976 A-----GCTTCTGGGCCTTGATGGTCTTGCGAC-CCTTGCCCTCGCGCTCGTACTTTTCG 59923 Query 110524 TACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAG 110583 |||||| ||||||| |||| ||||| |||| || || || || ||| || Sbjct 59922 TACAAGGCCTCAAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGGCAC 59863 Query 110584 AAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATC 110643 | ||||| ||| | | || ||| || |||||||||||||| || || ||||| | Sbjct 59862 ATGAGGGTCCATTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGG 59803 Query 110644 GCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAA 110703 || ||||||||||||| ||| |||| || | || ||||| ||| | |||| Sbjct 59802 GCGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATG 59743 Query 110704 AAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGACG- 110762 || || | || ||| | |||||| || || || |||| |||| || || | |||| Sbjct 59742 AACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCACC---AGGACGC 59686 Query 110763 -----ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATA 110817 || |||||| || ||||| || ||| |||||||| | ||||| ||||| Sbjct 59685 TTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATG 59626 Query 110818 ATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGG 110877 | || | || || || || || ||| ||| | ||||||| || ||| Sbjct 59625 ACGCCGTTAGAGGTGCCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCACGGATACGGTGA 59566 Query 110878 ATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTGAGTGTACC 110936 | | ||||| ||||| ||| ||| || || || ||| |||| || | Sbjct 59565 GCGTTGAGGCCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCT-TGAGGGTGTC 59507 Query 110937 ATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGG 110996 || ||||| ||||| || ||| |||| || | | || ||||| ||||||| ||| | Sbjct 59506 GTAGATACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTG-GC 59448 Query 110997 AC-GAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTG--GGA 111053 || |||| || || |||||||| ||||| || | || || ||| ||| |||| ||| Sbjct 59447 ACTGAGGGGTACCGGCATTGAAAAGTGTGGGGGAGGCGTGTGTGA--AGAACTTGCTGGA 59390 Query 111054 CATCTTGTTGTATGTGTCGA 111073 ||| |||||| || |||| Sbjct 59389 CATGAGGTTGTAGGTCTCGA 59370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588962608158200