Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06-
15] 1,819 sequences; 35,034,269 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq1170 188 8e-43
seq607 123 3e-23
>seq1170
Length=97779
Score = 188 bits (208), Expect = 8e-43
Identities = 1087/1714 (63%), Gaps = 65/1714 (4%)
Strand=Plus/Minus
Query 105697 CTGGTCAATGAAGCGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTG---AT 105753
||||||||||||| |||||| | || ||||| | || || | | || | ||
Sbjct 60925 CTGGTCAATGAAGGCACCACGATCGGCAGCCATCTGAA---CAACGGTGCGCTGGGAGAT 60869
Query 105754 TTCCCACACTGTGCGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAAT 105813
|||||| || || ||| ||| ||||| || | ||||| | | ||| || ||||
Sbjct 60868 TTCCCAGACGGTCTTGTACAGAGCCTTGACCTCGGCGGGGATGTTAGGGATGTTCTGAAC 60809
Query 105814 TGAACCCCCCGCCTTGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTT 105873
||||| | | || || | | |||||| | | |||||| | || || |
Sbjct 60808 GGAACCGTTCTCGGCGATGATACGGTTCTTCATGGCATCGGACCACAAGCCCATGTCGAC 60749
Query 105874 GAGATCATTGACGAGATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAG 105933
||||| || | || |||||||| | ||||| || ||||| | | | |
Sbjct 60748 AAGATCCTTCAGCAGCCAGGGGTTGACAACCTGGAACTCGCCGGCGAGAACACGGCGCTG 60689
Query 105934 ATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 105993
|||||||| | |||||||| || ||||| || || || |||||||| || | |||||
Sbjct 60688 GTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGGGAAGTGGA 60629
Query 105994 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTC 106053
||| || ||||| || || | | | |||||| |||| ||| | |||||||| | ||
Sbjct 60628 GGCAGTAGGCATGGGAGCAACAAGCAAACTGTTGCGAACACCGTGCTCCTTGATTTGCTC 60569
Query 106054 CTTGAGAACATCCCAGTCGTAGTTG--AGCTTGGTTTCACCTTCCCACATATCAAATTGA 106111
||| ||| |||||||| || | || || || || |||| |||| || | |||
Sbjct 60568 CTTCAGAGAGTCCCAGTCCCAGAGGTCAGAG-GGCTTGACATTCC-ACATGTCGTACTGA 60511
Query 106112 AGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCC 106171
|| | || ||||| | || || ||||| | || |||| ||| | | |||
Sbjct 60510 AGGATACCCTGGGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTACCCTCCTCCCTGGCC 60451
Query 106172 AATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC 106231
| || | | | ||| | ||||| || ||||| ||||| || ||| |
Sbjct 60450 AGTTGAACGGACATGGTCAGAGCGGCGTGGTAGATGGTCTCAAAAATCTTCTTATTGAGA 60391
Query 106232 TCCTTGGCTTCATCTGAATC-AAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACC 106290
|| || ||| || || ||| || | |||| | || |||| || |||||
Sbjct 60390 TCGCGAGCCTCAGGAGACTCGAAAGGCAT-GCGGAGGGCGAGGAAGGCATCAGCAAGACC 60332
Query 106291 TTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---AC 106347
|| ||||| | ||| || || | ||| ||||| || || | ||| || |||| ||
Sbjct 60331 CTGGACACCAAGACCGATGGGGCGGTGACGCATGTTG--CTGTTGCG-AGCCTCAGGAAC 60275
Query 106348 GGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTC 106407
||| || || ||||||| ||| || || ||| | || |||| ||
Sbjct 60274 GGGGTAGTGGTTGACATCAATGATCTTGTTCAGGTTGCGAACAACGACCTGAGTGACCTC 60215
Query 106408 ATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTG------ACATACTTTGGAAG 106461
||||| || | |||| || | | |||||| || | | || ||
Sbjct 60214 GTGAAGCTTCTGGAAATCGTAAACAC------CCTCATTGTAGTCAACGAAGGTAGGCAG 60161
Query 106462 GGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTC 106521
||| | || ||||| ||||| ||||| |||||| | |||||| | ||| ||
Sbjct 60160 GGCAAGAGAGGCCAAGTTGCAGACAGCGACCTCATCGGGGGCGCAGTACTCAATAATCTC 60101
Query 106522 TGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCA 106581
|| || | |||||| || || || || | ||||||||||| ||||| |||
Sbjct 60100 AGTGCAGAGGTTGGAGCTGCGGATGGTTCCGAGGTTCTTTTGGTTGCTCTTGCGGTTCGC 60041
Query 106582 CGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTT 106641
||||||||||| |||||| |||| | || ||||| ||||| | || ||| || || |
Sbjct 60040 GGCATCCTTGTAAAGCATGAAGGGGTTGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTA 59981
Query 106642 CCACA-CATCGGCGGCTGGTACAATGGCGTTG-GCCCGT--CCCTCCGCCTCGTACTTTG 106697
||| | | || | | || | |||| ||| | || | ||||| ||||||||||
Sbjct 59980 CCAAAGCTTCTGGGCCTTG----ATGGTCTTGCGACCCTTGCCCTCGCGCTCGTACTTTT 59925
Query 106698 TGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGAC 106757
||| | ||| ||||||||||| || ||| | || || || || || || |
Sbjct 59924 CGTACAAGGCCTCAAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGGC 59865
Query 106758 AGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACA 106817
| | || | ||||| | || ||| || | ||||||||| || || || ||||| |
Sbjct 59864 ACATGAGGGTCCATTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGA 59805
Query 106818 GG--GATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACT 106874
|| || |||| || || | ||| || |||| || | || ||||| || || |
Sbjct 59804 GGGCGAGGAAA--AGGTCACGGGCACGGA-CCTCCTCCTTGCCGTGGTTCTTGCGCAAGT 59748
Query 106875 CAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTC 106934
| | |||||| | || ||| |||||||| |||||||| |||| |||| | ||
Sbjct 59747 CCATGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCACC---AG 59691
Query 106935 GACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTG 106988
||||| ||| | || | || ||||| || ||| ||| || || |||||||| |
Sbjct 59690 GACGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGG 59631
Query 106989 GAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACAT 107048
|||| | || | || || || || || ||| || | |||| | | |
Sbjct 59630 GAATGACGCCGTTAGAGGTGCCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCACGGATAC 59571
Query 107049 CATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAG 107108
|| || | ||||| || |||||| ||| ||||| || || | | || |
Sbjct 59570 GGTGAGCGTTGAGGCCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGG 59511
Query 107109 TTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCT 107168
| | |||||||| | || ||||| ||||| || ||| |||||||| |||| ||
Sbjct 59510 TGTCGTAGATACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCT 59451
Query 107169 GCGGTCT-TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG- 107226
| | || || ||||| |||||||| || || || | ||||| ||| | | ||||
Sbjct 59450 G-GCACTGAGGGGTACCGGCATTGAAAAGTGTGGGGGAGGCGTGTGTGA--AGAACTTGC 59394
Query 107227 -GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGG 107285
|||||| || ||| ||||| | ||| |||| || || || ||| |||| |
Sbjct 59393 TGGACATGAGGTTGTAGGTCTCGATGACGCGCTCAACATCGTCGCCCCAGATACCGACTG 59334
Query 107286 CCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA--AG 107343
| |||||||| | ||||| || ||| | || | |||| |||||| |||| ||
Sbjct 59333 CGACACGCATGATCATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCGAGC--TTGAGCAG 59276
Query 107344 ATA-GCTCTTCTCAAGGGTTTTGAGACCAAAGTA 107376
|| | || |||| || || |||| || |||||
Sbjct 59275 GTATGATC-TCTCCAGAGTCTTGAAGCCGAAGTA 59243
>seq607
Length=5268
Score = 123 bits (136), Expect = 3e-23
Identities = 279/413 (68%), Gaps = 21/413 (5%)
Strand=Plus/Plus
Query 9195 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9254
|| || ||||| ||||| | ||||| | ||||| ||||| | | || || | |||
Sbjct 3136 TCGAAACGACCGGGACGCATCAGCGCCTTGTCAAGAATATCGGCTCTGTTGGTGCCCGCG 3195
Query 9255 ATGACAACAATACCTGTT--TCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAA 9312
| |||||| | |||| | | ||| ||||| |||||||||||||| | ||||| |
Sbjct 3196 AGGACAACGA--CCTGCTCTTGGGTATTGAAACCGTCCATCTCTGTCAAGATCTGGTTCA 3253
Query 9313 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCCA 9369
|||| ||| || |||||||| | ||| | || | ||| ||| | |||
Sbjct 3254 GAGTTGCTTCGCGCTCATCATTGCCGCCCATGCGGTTTCCTTC-CTGTCTTGATCGACCA 3312
Query 9370 C-GGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428
||| || || ||||||||||||| ||||| || | | | ||||||| || ||||
Sbjct 3313 ATGGCGTCGATTTCATCAATGAAGATGATACAGGGGGCACTCTTGCGGGCGTTTGCAAAC 3372
Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488
| || || || ||| | || ||||| ||||||||||| || || | |||||
Sbjct 3373 AAGTCTCGCACTCTTGAAGGACCAACACCGACAAACATCTCGACGAACT------CGGAA 3426
Query 9489 -CATTG-----GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 9542
|| || || |||||| ||| ||| || || || |||| ||| || | |||
Sbjct 3427 CCACTGACGCTGAAGAAGGGCACACCAGACTCGCCAGCGGTGGCCTTGGCAAGCAACGTC 3486
Query 9543 TTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595
||||| || || || || ||||||| |||||| || |||||||| |||||
Sbjct 3487 TTACCGGTTCCAGGAGGTCCGGCGAGGATGGCACCACGAGGAATCTTTGCGCC 3539
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589967385311560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |