Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06- 15] 1,819 sequences; 35,034,269 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1170 188 8e-43 seq607 123 3e-23 >seq1170 Length=97779 Score = 188 bits (208), Expect = 8e-43 Identities = 1087/1714 (63%), Gaps = 65/1714 (4%) Strand=Plus/Minus Query 105697 CTGGTCAATGAAGCGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTG---AT 105753 ||||||||||||| |||||| | || ||||| | || || | | || | || Sbjct 60925 CTGGTCAATGAAGGCACCACGATCGGCAGCCATCTGAA---CAACGGTGCGCTGGGAGAT 60869 Query 105754 TTCCCACACTGTGCGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAAT 105813 |||||| || || ||| ||| ||||| || | ||||| | | ||| || |||| Sbjct 60868 TTCCCAGACGGTCTTGTACAGAGCCTTGACCTCGGCGGGGATGTTAGGGATGTTCTGAAC 60809 Query 105814 TGAACCCCCCGCCTTGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTT 105873 ||||| | | || || | | |||||| | | |||||| | || || | Sbjct 60808 GGAACCGTTCTCGGCGATGATACGGTTCTTCATGGCATCGGACCACAAGCCCATGTCGAC 60749 Query 105874 GAGATCATTGACGAGATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAG 105933 ||||| || | || |||||||| | ||||| || ||||| | | | | Sbjct 60748 AAGATCCTTCAGCAGCCAGGGGTTGACAACCTGGAACTCGCCGGCGAGAACACGGCGCTG 60689 Query 105934 ATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 105993 |||||||| | |||||||| || ||||| || || || |||||||| || | ||||| Sbjct 60688 GTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGGGAAGTGGA 60629 Query 105994 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTC 106053 ||| || ||||| || || | | | |||||| |||| ||| | |||||||| | || Sbjct 60628 GGCAGTAGGCATGGGAGCAACAAGCAAACTGTTGCGAACACCGTGCTCCTTGATTTGCTC 60569 Query 106054 CTTGAGAACATCCCAGTCGTAGTTG--AGCTTGGTTTCACCTTCCCACATATCAAATTGA 106111 ||| ||| |||||||| || | || || || || |||| |||| || | ||| Sbjct 60568 CTTCAGAGAGTCCCAGTCCCAGAGGTCAGAG-GGCTTGACATTCC-ACATGTCGTACTGA 60511 Query 106112 AGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCC 106171 || | || ||||| | || || ||||| | || |||| ||| | | ||| Sbjct 60510 AGGATACCCTGGGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTACCCTCCTCCCTGGCC 60451 Query 106172 AATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC 106231 | || | | | ||| | ||||| || ||||| ||||| || ||| | Sbjct 60450 AGTTGAACGGACATGGTCAGAGCGGCGTGGTAGATGGTCTCAAAAATCTTCTTATTGAGA 60391 Query 106232 TCCTTGGCTTCATCTGAATC-AAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACC 106290 || || ||| || || ||| || | |||| | || |||| || ||||| Sbjct 60390 TCGCGAGCCTCAGGAGACTCGAAAGGCAT-GCGGAGGGCGAGGAAGGCATCAGCAAGACC 60332 Query 106291 TTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---AC 106347 || ||||| | ||| || || | ||| ||||| || || | ||| || |||| || Sbjct 60331 CTGGACACCAAGACCGATGGGGCGGTGACGCATGTTG--CTGTTGCG-AGCCTCAGGAAC 60275 Query 106348 GGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTC 106407 ||| || || ||||||| ||| || || ||| | || |||| || Sbjct 60274 GGGGTAGTGGTTGACATCAATGATCTTGTTCAGGTTGCGAACAACGACCTGAGTGACCTC 60215 Query 106408 ATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTG------ACATACTTTGGAAG 106461 ||||| || | |||| || | | |||||| || | | || || Sbjct 60214 GTGAAGCTTCTGGAAATCGTAAACAC------CCTCATTGTAGTCAACGAAGGTAGGCAG 60161 Query 106462 GGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTC 106521 ||| | || ||||| ||||| ||||| |||||| | |||||| | ||| || Sbjct 60160 GGCAAGAGAGGCCAAGTTGCAGACAGCGACCTCATCGGGGGCGCAGTACTCAATAATCTC 60101 Query 106522 TGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCA 106581 || || | |||||| || || || || | ||||||||||| ||||| ||| Sbjct 60100 AGTGCAGAGGTTGGAGCTGCGGATGGTTCCGAGGTTCTTTTGGTTGCTCTTGCGGTTCGC 60041 Query 106582 CGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTT 106641 ||||||||||| |||||| |||| | || ||||| ||||| | || ||| || || | Sbjct 60040 GGCATCCTTGTAAAGCATGAAGGGGTTGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTA 59981 Query 106642 CCACA-CATCGGCGGCTGGTACAATGGCGTTG-GCCCGT--CCCTCCGCCTCGTACTTTG 106697 ||| | | || | | || | |||| ||| | || | ||||| |||||||||| Sbjct 59980 CCAAAGCTTCTGGGCCTTG----ATGGTCTTGCGACCCTTGCCCTCGCGCTCGTACTTTT 59925 Query 106698 TGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGAC 106757 ||| | ||| ||||||||||| || ||| | || || || || || || | Sbjct 59924 CGTACAAGGCCTCAAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGGC 59865 Query 106758 AGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACA 106817 | | || | ||||| | || ||| || | ||||||||| || || || ||||| | Sbjct 59864 ACATGAGGGTCCATTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGA 59805 Query 106818 GG--GATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACT 106874 || || |||| || || | ||| || |||| || | || ||||| || || | Sbjct 59804 GGGCGAGGAAA--AGGTCACGGGCACGGA-CCTCCTCCTTGCCGTGGTTCTTGCGCAAGT 59748 Query 106875 CAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTC 106934 | | |||||| | || ||| |||||||| |||||||| |||| |||| | || Sbjct 59747 CCATGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCACC---AG 59691 Query 106935 GACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTG 106988 ||||| ||| | || | || ||||| || ||| ||| || || |||||||| | Sbjct 59690 GACGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGG 59631 Query 106989 GAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACAT 107048 |||| | || | || || || || || ||| || | |||| | | | Sbjct 59630 GAATGACGCCGTTAGAGGTGCCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCACGGATAC 59571 Query 107049 CATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAG 107108 || || | ||||| || |||||| ||| ||||| || || | | || | Sbjct 59570 GGTGAGCGTTGAGGCCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGG 59511 Query 107109 TTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCT 107168 | | |||||||| | || ||||| ||||| || ||| |||||||| |||| || Sbjct 59510 TGTCGTAGATACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCT 59451 Query 107169 GCGGTCT-TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG- 107226 | | || || ||||| |||||||| || || || | ||||| ||| | | |||| Sbjct 59450 G-GCACTGAGGGGTACCGGCATTGAAAAGTGTGGGGGAGGCGTGTGTGA--AGAACTTGC 59394 Query 107227 -GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGG 107285 |||||| || ||| ||||| | ||| |||| || || || ||| |||| | Sbjct 59393 TGGACATGAGGTTGTAGGTCTCGATGACGCGCTCAACATCGTCGCCCCAGATACCGACTG 59334 Query 107286 CCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA--AG 107343 | |||||||| | ||||| || ||| | || | |||| |||||| |||| || Sbjct 59333 CGACACGCATGATCATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCGAGC--TTGAGCAG 59276 Query 107344 ATA-GCTCTTCTCAAGGGTTTTGAGACCAAAGTA 107376 || | || |||| || || |||| || ||||| Sbjct 59275 GTATGATC-TCTCCAGAGTCTTGAAGCCGAAGTA 59243 >seq607 Length=5268 Score = 123 bits (136), Expect = 3e-23 Identities = 279/413 (68%), Gaps = 21/413 (5%) Strand=Plus/Plus Query 9195 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9254 || || ||||| ||||| | ||||| | ||||| ||||| | | || || | ||| Sbjct 3136 TCGAAACGACCGGGACGCATCAGCGCCTTGTCAAGAATATCGGCTCTGTTGGTGCCCGCG 3195 Query 9255 ATGACAACAATACCTGTT--TCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAA 9312 | |||||| | |||| | | ||| ||||| |||||||||||||| | ||||| | Sbjct 3196 AGGACAACGA--CCTGCTCTTGGGTATTGAAACCGTCCATCTCTGTCAAGATCTGGTTCA 3253 Query 9313 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCCA 9369 |||| ||| || |||||||| | ||| | || | ||| ||| | ||| Sbjct 3254 GAGTTGCTTCGCGCTCATCATTGCCGCCCATGCGGTTTCCTTC-CTGTCTTGATCGACCA 3312 Query 9370 C-GGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428 ||| || || ||||||||||||| ||||| || | | | ||||||| || |||| Sbjct 3313 ATGGCGTCGATTTCATCAATGAAGATGATACAGGGGGCACTCTTGCGGGCGTTTGCAAAC 3372 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488 | || || || ||| | || ||||| ||||||||||| || || | ||||| Sbjct 3373 AAGTCTCGCACTCTTGAAGGACCAACACCGACAAACATCTCGACGAACT------CGGAA 3426 Query 9489 -CATTG-----GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 9542 || || || |||||| ||| ||| || || || |||| ||| || | ||| Sbjct 3427 CCACTGACGCTGAAGAAGGGCACACCAGACTCGCCAGCGGTGGCCTTGGCAAGCAACGTC 3486 Query 9543 TTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595 ||||| || || || || ||||||| |||||| || |||||||| ||||| Sbjct 3487 TTACCGGTTCCAGGAGGTCCGGCGAGGATGGCACCACGAGGAATCTTTGCGCC 3539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589967385311560