Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06-
15] 1,819 sequences; 35,034,269 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq866 129 1e-24
seq766 102 2e-16
>seq866
Length=7889
Score = 129 bits (142), Expect = 1e-24
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| || ||||| ||||| || || || || ||||| ||| || || | ||||||||
Sbjct 3081 ACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCC 3022
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
| |||||| || ||||||||||| || || ||||| ||||| || || || || || |||
Sbjct 3021 AACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTATCCTGA 2962
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||| ||||| ||||| ||||| || || || || | ||||| ||||||
Sbjct 2961 ATCTTAGACTTCACGTTGTCAATCGTGTCTGATGACTCGACCTCCAAGGTAATCGTCTTG 2902
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| ||||| || || ||||| | |||||
Sbjct 2901 CCAGTCAACGTCTTCACGAAGATCTGCAT 2873
Score = 127 bits (140), Expect = 5e-24
Identities = 148/200 (74%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||| | ||| || |||||||| || ||||| ||||| |||| || || | ||||| ||
Sbjct 2626 AACCAAGTGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCCTC 2567
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
|| ||||| || || ||||| | || || ||||| ||||||||||| || ||||| ||
Sbjct 2566 AAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTG 2507
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
||| || ||||||||| || ||||| || ||| || || |||||||| | |||||
Sbjct 2506 AATCTTGGACTTGACGTTGTCGATGGTATCAGAAGACTCGACCTCAAGGGTGATGGTCTT 2447
Query 195111 TCCTGTCAAAGTTTTTACGA 195130
|| || | || || ||||
Sbjct 2446 GCCGGTGAGGGTCTTGACGA 2427
Score = 107 bits (118), Expect = 4e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||| || || || ||||| || || || ||||| || | | || | || || ||
Sbjct 2853 ACAAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAACGTGCGACCGTCCTCA 2794
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| | || || ||||| || || || || || || |||||
Sbjct 2793 AGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATACCCTCCTTATCTTGG 2734
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||| ||||| ||||||||||| ||| ||| || || || || | |||||
Sbjct 2733 ATCTTCGACTTAACGTTGTCAATGGTGTCTGAAGATTCAACCTCGAGCGTGATTGTCTTG 2674
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | ||| || ||||| | |||||
Sbjct 2673 CCAGTAAGAGTCTTCACGAAGATCTGCAT 2645
Score = 102 bits (112), Expect = 2e-16
Identities = 134/186 (72%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||| | |||||| || ||||| || || || ||||| |||| || || | || || ||
Sbjct 2340 AACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTC 2281
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
||||| || || ||||| || || || || || || || |||||||| || ||||||||
Sbjct 2280 AAGCTGTTTGCCAGCGAAAATGAGACGCTGCTGATCGGGGGGAATGCCCTCCTTGTCTTG 2221
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
||| || ||||||||| || ||||| || || || || || || || | |||||
Sbjct 2220 AATCTTGGACTTGACGTTGTCGATGGTATCGGATGACTCGACCTCGAGAGTGATGGTCTT 2161
Query 195111 TCCTGT 195116
|| ||
Sbjct 2160 GCCGGT 2155
>seq766
Length=50960
Score = 102 bits (112), Expect = 2e-16
Identities = 130/179 (73%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012
|| || || ||||| |||| || || | || || ||||||||||| || ||||||||
Sbjct 293 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATC 234
Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072
| || || ||||| || || ||||| || ||||| || || || |||||| || ||
Sbjct 233 AAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 174
Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131
|| ||||| || || || |||||||||| ||||| || |||| || || |||||
Sbjct 173 ATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 115
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109455742491173
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |