Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06- 15] 1,819 sequences; 35,034,269 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1170 298 1e-75 >seq1170 Length=97779 Score = 298 bits (330), Expect = 1e-75 Identities = 844/1281 (66%), Gaps = 53/1281 (4%) Strand=Plus/Minus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGG 221475 ||||| || |||||||||||||||||||| ||| |||| ||||| || | ||||| || Sbjct 60435 GTCAGAGCGGCGTGGTAGATGGTCTCAAAAATCTTCTTATTGAGA-TCGCGAGCCTCAGG 60377 Query 221476 AGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535 ||| ||| ||||| || || | ||| | || || || ||||| || || | ||| Sbjct 60376 AGACTCGAAAGGCATGCGGAGGGCGAGGAAGGCATCAGCAAGACCCTGGACACCAAGACC 60317 Query 221536 GATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACG 221593 |||||| | ||| | | ||||| | ||| || || || ||||| || |||||| Sbjct 60316 GATGGGGCGGTGACGCATGTTGCTGTTGCGA--GCCTCAGGAACGGGGTAGTGGTTGACA 60259 Query 221594 TCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGA 221653 || || | ||||| ||||| || | ||| | | |||||| ||||||||| | Sbjct 60258 TCAATGATCTTGTTCAGGTTGCGAACAACGACCTGAGTGACCTCGTGAAGCTTCTGGAAA 60199 Query 221654 TTG--AACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGC 221711 | | |||||| ||| | ||| || || | || ||||||| Sbjct 60198 TCGTAAACACC--CTCATTGTAGTCAACGAAGGT--------AGGC----AGGGCAAGAG 60153 Query 221712 TGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGA 221771 ||||| ||| || || || ||||| || | | |||| || ||||| || |||| Sbjct 60152 AGGCCAAGTTGCAGACAGCGACCTCATCGGGGGCGCAGTACTCAATAATCTCAGTGCAGA 60093 Query 221772 GGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCT 221831 ||||| || |||||| || |||| || || || |||||| || || || |||| Sbjct 60092 GGTTGGAGCTGCGGATGGTTCCGAGGTTCTTTTGGTTGCTCTTGCGGTTCGCGGCATCCT 60033 Query 221832 TGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTT 221891 |||| ||||| ||||| ||| ||||| ||||||| | || || || ||| || | Sbjct 60032 TGTAAAGCATGAAGGGGTTGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTACCAAAGCT 59973 Query 221892 CTCTGGCGCTC-ACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCATACCCGGTA 221944 ||||| || | ||| | |||| | | | |||| |||||| ||| || Sbjct 59972 -TCTGGGCCTTGATGGTCTTGCGACCCTTGCCCTCGCGCTCGTACTTTTCGTACAAGGCC 59914 Query 221945 TAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACAC 222004 | |||||| || ||||| || ||||||| || ||| | ||| ||| Sbjct 59913 T---------CAAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGGCAC 59863 Query 222005 ATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGC 222064 || || |||| | ||| | | ||| |||| |||||| || || |||||||| || Sbjct 59862 ATGAGGGTCCATTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGG 59803 Query 222065 GCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAA 222124 || | || || || | || || ||||||| ||||| ||| || | || |||| Sbjct 59802 GCGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATG 59743 Query 222125 AACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTG 222184 ||||| || | || |||||||| ||||| || |||| ||| | || || || |||||| Sbjct 59742 AACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCACCAGGACGCTTG 59683 Query 222185 TTGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAG 222243 ||||||||||| || | | | ||| | |||||||| ||||| | || | | Sbjct 59682 TTGCCACCCTGGTCGA-CGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGAC 59624 Query 222244 TCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTG-- 222301 ||||| || ||||||||||| |||||| | || ||| | || ||| | Sbjct 59623 GCCGTTAGAGGTGCCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCAC---GGATACGGTG 59567 Query 222302 -GCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTC 222360 || | ||| || ||||| || || ||||||||||||||| ||||||| ||||| Sbjct 59566 AGCGTTGAGGCCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTC 59507 Query 222361 CATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGA 222420 ||| ||||| || ||||| ||||| | || | || || || || |||| ||| | Sbjct 59506 GTAGATACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCA 59447 Query 222421 TTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACAT 222480 | | || || ||| || || || ||||| ||||||||| ||| | || ||||| Sbjct 59446 CTGAGGGGTACCGGCATTGAAAAGTGTGGGGGAGGCGTGTGTGAAGAACTTGCTGGACAT 59387 Query 222481 CAGATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGCATGGCGCATC 222539 || | ||| ||||| | ||| | | | | ||| ||| || | | | ||| | Sbjct 59386 GAGGTTGTAGGTCTCGATGACGCGCTCAACATCGTCGCCCCAGATACCG-ACTGCGACAC 59328 Query 222540 TCATGTACATGTACTGGGGCCTCTC--CACAGGACCCTTGGAGCTGGAGAGCAGGTACGA 222597 |||| ||||| ||| || ||||| || || | ||||| ||||||||| || Sbjct 59327 GCATGATCATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCGAGCT--TGAGCAGGTATGA 59270 Query 222598 TTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGC 222657 | | |||||||||||||| || ||||| | | || ||||| | | ||| || | ||| Sbjct 59269 TCTCTCCAGAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACGATGGC 59210 Query 222658 GGCGTCCAGCTCCGACTTGTG 222678 | ||| |||||| |||||| Sbjct 59209 AGAGTCTAGCTCCTCCTTGTG 59189 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || || ||||| || || | ||| || | | |||||| | ||| || ||| | || Sbjct 60727 GTTGACAACCTGGAACTCGCCGGCGAGAACACGGCGCTGGTAGATGTTGGAGGTGTAGGG 60668 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 |||| || |||||||||||||| |||||| | ||| ||| || |||||||| || || Sbjct 60667 CTCGAAGCACTCGTTGTTGCCCAAGATCTGGGAAGTGGAGGCAGTAGGCATGGGAGCAAC 60608 Query 221236 CAGCAGACTGTTGCG 221250 |||| ||||||||| Sbjct 60607 AAGCAAACTGTTGCG 60593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928823680391360