Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06-
15] 1,819 sequences; 35,034,269 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq1170 298 1e-75
>seq1170
Length=97779
Score = 298 bits (330), Expect = 1e-75
Identities = 844/1281 (66%), Gaps = 53/1281 (4%)
Strand=Plus/Minus
Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGG 221475
||||| || |||||||||||||||||||| ||| |||| ||||| || | ||||| ||
Sbjct 60435 GTCAGAGCGGCGTGGTAGATGGTCTCAAAAATCTTCTTATTGAGA-TCGCGAGCCTCAGG 60377
Query 221476 AGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535
||| ||| ||||| || || | ||| | || || || ||||| || || | |||
Sbjct 60376 AGACTCGAAAGGCATGCGGAGGGCGAGGAAGGCATCAGCAAGACCCTGGACACCAAGACC 60317
Query 221536 GATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACG 221593
|||||| | ||| | | ||||| | ||| || || || ||||| || ||||||
Sbjct 60316 GATGGGGCGGTGACGCATGTTGCTGTTGCGA--GCCTCAGGAACGGGGTAGTGGTTGACA 60259
Query 221594 TCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGA 221653
|| || | ||||| ||||| || | ||| | | |||||| ||||||||| |
Sbjct 60258 TCAATGATCTTGTTCAGGTTGCGAACAACGACCTGAGTGACCTCGTGAAGCTTCTGGAAA 60199
Query 221654 TTG--AACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGC 221711
| | |||||| ||| | ||| || || | || |||||||
Sbjct 60198 TCGTAAACACC--CTCATTGTAGTCAACGAAGGT--------AGGC----AGGGCAAGAG 60153
Query 221712 TGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGA 221771
||||| ||| || || || ||||| || | | |||| || ||||| || ||||
Sbjct 60152 AGGCCAAGTTGCAGACAGCGACCTCATCGGGGGCGCAGTACTCAATAATCTCAGTGCAGA 60093
Query 221772 GGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCT 221831
||||| || |||||| || |||| || || || |||||| || || || ||||
Sbjct 60092 GGTTGGAGCTGCGGATGGTTCCGAGGTTCTTTTGGTTGCTCTTGCGGTTCGCGGCATCCT 60033
Query 221832 TGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTT 221891
|||| ||||| ||||| ||| ||||| ||||||| | || || || ||| || |
Sbjct 60032 TGTAAAGCATGAAGGGGTTGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTACCAAAGCT 59973
Query 221892 CTCTGGCGCTC-ACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCATACCCGGTA 221944
||||| || | ||| | |||| | | | |||| |||||| ||| ||
Sbjct 59972 -TCTGGGCCTTGATGGTCTTGCGACCCTTGCCCTCGCGCTCGTACTTTTCGTACAAGGCC 59914
Query 221945 TAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACAC 222004
| |||||| || ||||| || ||||||| || ||| | ||| |||
Sbjct 59913 T---------CAAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGGCAC 59863
Query 222005 ATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGC 222064
|| || |||| | ||| | | ||| |||| |||||| || || |||||||| ||
Sbjct 59862 ATGAGGGTCCATTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGG 59803
Query 222065 GCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAA 222124
|| | || || || | || || ||||||| ||||| ||| || | || ||||
Sbjct 59802 GCGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATG 59743
Query 222125 AACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTG 222184
||||| || | || |||||||| ||||| || |||| ||| | || || || ||||||
Sbjct 59742 AACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCACCAGGACGCTTG 59683
Query 222185 TTGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAG 222243
||||||||||| || | | | ||| | |||||||| ||||| | || | |
Sbjct 59682 TTGCCACCCTGGTCGA-CGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGAC 59624
Query 222244 TCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTG-- 222301
||||| || ||||||||||| |||||| | || ||| | || ||| |
Sbjct 59623 GCCGTTAGAGGTGCCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCAC---GGATACGGTG 59567
Query 222302 -GCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTC 222360
|| | ||| || ||||| || || ||||||||||||||| ||||||| |||||
Sbjct 59566 AGCGTTGAGGCCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTC 59507
Query 222361 CATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGA 222420
||| ||||| || ||||| ||||| | || | || || || || |||| ||| |
Sbjct 59506 GTAGATACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCA 59447
Query 222421 TTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACAT 222480
| | || || ||| || || || ||||| ||||||||| ||| | || |||||
Sbjct 59446 CTGAGGGGTACCGGCATTGAAAAGTGTGGGGGAGGCGTGTGTGAAGAACTTGCTGGACAT 59387
Query 222481 CAGATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGCATGGCGCATC 222539
|| | ||| ||||| | ||| | | | | ||| ||| || | | | ||| |
Sbjct 59386 GAGGTTGTAGGTCTCGATGACGCGCTCAACATCGTCGCCCCAGATACCG-ACTGCGACAC 59328
Query 222540 TCATGTACATGTACTGGGGCCTCTC--CACAGGACCCTTGGAGCTGGAGAGCAGGTACGA 222597
|||| ||||| ||| || ||||| || || | ||||| ||||||||| ||
Sbjct 59327 GCATGATCATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCGAGCT--TGAGCAGGTATGA 59270
Query 222598 TTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGC 222657
| | |||||||||||||| || ||||| | | || ||||| | | ||| || | |||
Sbjct 59269 TCTCTCCAGAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACGATGGC 59210
Query 222658 GGCGTCCAGCTCCGACTTGTG 222678
| ||| |||||| ||||||
Sbjct 59209 AGAGTCTAGCTCCTCCTTGTG 59189
Score = 95.1 bits (104), Expect = 2e-14
Identities = 102/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175
||| || || ||||| || || | ||| || | | |||||| | ||| || ||| | ||
Sbjct 60727 GTTGACAACCTGGAACTCGCCGGCGAGAACACGGCGCTGGTAGATGTTGGAGGTGTAGGG 60668
Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235
|||| || |||||||||||||| |||||| | ||| ||| || |||||||| || ||
Sbjct 60667 CTCGAAGCACTCGTTGTTGCCCAAGATCTGGGAAGTGGAGGCAGTAGGCATGGGAGCAAC 60608
Query 221236 CAGCAGACTGTTGCG 221250
|||| |||||||||
Sbjct 60607 AAGCAAACTGTTGCG 60593
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928823680391360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |