Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06- 15] 1,819 sequences; 35,034,269 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1170 179 4e-40 >seq1170 Length=97779 Score = 179 bits (198), Expect = 4e-40 Identities = 1049/1653 (63%), Gaps = 77/1653 (5%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| ||||||| |||||| |||| ||| || || || |||| ||| Sbjct 59309 CCGCAGCACATGATCATGCGTGTCGCAGTCGGTATCTGGGGCGACGATGTTGAGCGCGTC 59368 Query 75272 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 75329 | ||||| ||| || |||||| |||| | | ||| ||||| | || || || | Sbjct 59369 ATCGAGACCTACAACCTCATGTCCAGCAAGTTCT--TCACACACGCCTCCCCCACACTTT 59426 Query 75330 TCAATGCTGGTACACCA-AGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 75388 ||||||| ||||| || || | ||| |||| |||||||| ||| || ||||| Sbjct 59427 TCAATGCCGGTACCCCTCAGTGC-CAGCTGTCTTCATGCTTCCTCGTCGACATGAAGGAA 59485 Query 75389 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 75448 ||||| || | |||||||| | || || | | || || ||||| ||| |||| Sbjct 59486 GACTCCATTGAGGGTATCTACGACACCCTCAAGACCTGCGCCATGATCTCCAAGATGGCT 59545 Query 75449 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACA 75508 || || ||||| | || || | | | |||| | || ||| || || Sbjct 59546 GGTGGCATTGGCCTCAACGCTCACCGTATCCGTGCCACTGGCTCCTACATTGCCGGCACC 59605 Query 75509 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 75568 || || || | || | ||||| |||||||| || || ||| ||| || ||||| Sbjct 59606 AACGGCACCTCTAACGGCGTCATTCCCATGCTTCGTGTCTTCAACAACACTGCTCGCTAC 59665 Query 75569 GTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGG 75622 || | || | || ||||| || || |||| ||||| | || || ||| Sbjct 59666 GTCGACCAGGGTGGCAACAAGCGTCCT---GGTGCCTTCGCCATCTACCTTGAGCCCTGG 59722 Query 75623 CATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGG 75682 || |||||| || | |||||| | || || || ||||| || | || |||| || | Sbjct 59723 CACGCCGATGTCTTCGAGTTCATGGACTTGCGCAAGAACCACGGCAAGGAGGAGG-TCCG 59781 Query 75683 TGTA-GAGATCTCTTTTCATC--CCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAG 75739 || | || || |||| || ||| ||||| || || || ||||||||| | || ||| Sbjct 59782 TGCCCGTGACCT--TTTCCTCGCCCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAG 59839 Query 75740 GAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTG 75799 || | ||||| | || | || || || || || || || | ||| Sbjct 59840 AAGAACGCCGAATGGACCCTCATGTGCCCCAACGAGTGCCCCGGCCTGGCTGACTGCTAC 59899 Query 75800 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAA---GAGG---AGGGTAGAGCCAAT 75853 || ||||||||||| ||| | ||| |||||| || |||| ||||| | ||| Sbjct 59900 GGCGAGGAGTTTGAGGCCTTGTACGAAAAGTACGAGCGCGAGGGCAAGGGTCG---CAA- 59955 Query 75854 GCGACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGG 75912 ||| | | || | | || | ||||| | || || ||| | | ||||| ||||| || Sbjct 59956 --GACCAT-CAAGGCCCAGAAGCTTTGGTACGCCATCCTCGAGGCTCAGACTGAGACCGG 60012 Query 75913 AACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGG 75972 | || | ||||||||||||||||| ||| ||||| ||||||||||| | || Sbjct 60013 CAACCCCTTCATGCTTTACAAGGATGCCGCGAACCGCAAGAGCAACCAAAAGAACCTCGG 60072 Query 75973 AACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGAC 76032 ||| ||| ||||| || || ||||| || ||| | |||||| | |||||| Sbjct 60073 AACCATCCGCAGCTCCAACCTCTGCACTGAGATTATTGAGTACTGCGCCCCCGATGAGGT 60132 Query 76033 GGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGT------CAATGAAGAGAC 76086 ||||| ||||| ||||| || | ||||| || | | || |||||| | Sbjct 60133 CGCTGTCTGCAACTTGGCCTCTCTTGCCCTGCCTACCTTCGTTGACTACAATGAGG---- 60188 Query 76087 TCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAA 76146 | || |||| | || ||||| || |||| || | ||| || || || Sbjct 60189 --GTGTTTACGATTTCCAGAAGCTTCACGAGGTCACTCAGGTCGTTGTTCGCAACCTGAA 60246 Query 76147 CCGAGTCATTGACAGAAATTTTTATCCCGT---TGAGACTGCGCGAAAGTCTAATATGCG 76203 | ||||||| || || ||||| |||| || ||| | || || ||||| Sbjct 60247 CAAGATCATTGATGTCAACCACTACCCCGTTCCTGAGGCT-CGCAACAG--CAACATGCG 60303 Query 76204 ACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTA 76263 ||| | || || ||| | ||||| || ||||| || |||| || | |||| | Sbjct 60304 TCACCGCCCCATCGGTCTTGGTGTCCAGGGTCTTGCTGATGCCTTCCTCGCCCTCCGC-A 60362 Query 76264 CGCATTT-GATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATC 76322 || ||| || || ||| || || | ||| || ||||| ||||| || | Sbjct 60363 TGCCTTTCGAGTCTCCTGAGGCTCGCGATCTCAATAAGAAGATTTTTGAGACCATCTACC 60422 Query 76323 ACGCATCCCTG--GAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATT 76380 |||| | ||| | | || | || |||| | | ||| |||| || | Sbjct 60423 ACGCCGCTCTGACCATGTCCGT--TCAACTGGCCAGGGAGGAGGGTACCTACTCCACGTA 60480 Query 76381 TGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAA 76440 ||||| || || ||||| || | ||||||| || |||| |||| || || || Sbjct 60481 CGAGGGCTCCCCTATCTCCCAGGGTATCCTTCAGTACGACATGT-GGAATGTCAAGCC-C 60538 Query 76441 GCT--CAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAAC 76498 || | || |||||||| ||| ||||| | ||||||||| | ||| |||| ||| Sbjct 60539 TCTGACCTCTGGGACTGGGACTCTCTGAAGGAGCAAATCAAGGAGCACGGTGTTCGCAAC 60598 Query 76499 AGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAA 76558 ||| | | | || || ||||| || |||||||| | || |||||||| || || || Sbjct 60599 AGTTTGCTTGTTGCTCCCATGCCTACTGCCTCCACTTCCCAGATCTTGGGCAACAACGAG 60658 Query 76559 TGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTC 76618 ||||| || || ||||| | |||||||||| | | | ||||| || ||||| Sbjct 60659 TGCTTCGAGCCCTACACCTCCAACATCTACCAGCGCCGTGTTCTCGCCGGCGAGTTCCAG 60718 Query 76619 ATTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATG 76678 |||||||| || | || || || | || || | |||||| | | ||| Sbjct 60719 GTTGTCAACCCCTGGCTGCTGAAGGATCTTGTCGACATGGGCTTGTGGTCCGATGCCATG 60778 Query 76679 AAGGA---TCTCAT-GGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGA 76734 ||| | | |||| | || | | |||||| |||| || ||| | | ||||| | Sbjct 60779 AAGAACCGTATCATCGCCGAGAAC----GGTTCCGTTCAGAACATCCCTAACATCCCCGC 60834 Query 76735 TGATATCAAGAATCTCTACCGCACAGTGTGGGAAAT---CAAGATGAAAGATGTCATTGA 76791 || ||||| ||| ||| || || |||||||| | || | | || || | Sbjct 60835 CGAGGTCAAGGCTCTGTACAAGACCGTCTGGGAAATCTCCCAGCGCACCGTTG---TTCA 60891 Query 76792 CATGGCCGCAGATCGTGGTCGCTTCATTGATCA 76824 ||||| || ||||||||| ||||||||| || Sbjct 60892 GATGGCTGCCGATCGTGGTGCCTTCATTGACCA 60924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596556035498720