Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06- 15] 1,819 sequences; 35,034,269 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq1295 367 2e-96 seq866 192 8e-44 seq1170 105 9e-18 seq319 100 4e-16 seq607 96.9 5e-15 >seq1295 Length=19304 Score = 367 bits (406), Expect = 2e-96 Identities = 786/1171 (67%), Gaps = 5/1171 (0%) Strand=Plus/Minus Query 195711 CAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTG 195770 |||| || ||||| || || ||||||| || || || || || || || |||||||| | Sbjct 14482 CAGTCGTCACTGTCCCCGCCTACTTCAACGACTCCCAGCGTCAAGCTACCAAGGACGCAG 14423 Query 195771 CTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTG 195830 | ||||| || || ||| ||| | || ||||| || || || || ||||| |||| Sbjct 14422 GTCTCATTGCCGGCCTCAACGTCCTTCGTATCATCAACGAGCCTACCGCCGCTGCCATTG 14363 Query 195831 CTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTG 195890 | || ||||| |||||||| || | || || || | ||||| ||||| |||| Sbjct 14362 CCTACGGTCTTGACAAGAAGGCCGAGGGCGAGCGCAACGTTCTCATCTTCGATCTTGGTG 14303 Query 195891 GTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTA 195950 ||||||| || ||||| || ||||| | ||||| | || || ||||| || ||| | | Sbjct 14302 GTGGTACTTTCGATGTGTCTCTTCTGACCATTGAGGAGGGCATTTTCGAGGTCAAGTCCA 14243 Query 195951 CTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTTG 196009 | |||||||| ||||| | |||||||| || || || ||||| || || || | Sbjct 14242 CCGCTGGTGACACTCACTTGGGTGGTGAGGACTTTGACAACCGTCTCGTCAACCACTTCG 14183 Query 196010 TCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGT 196069 || | |||||| || ||| | ||||| || | || || | | || || || Sbjct 14182 TC-AACGAGTTCAAGCGCAAGCACAAGAAGGACCTGTCCTCCAACGCCCGCGCCCTGCGC 14124 Query 196070 CGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATG 196129 || ||| | || || || || |||||||| || ||||| || || | || || || Sbjct 14123 CGTCTTCGCACCGCTTGCGAGCGTGCCAAGCGCACTCTGTCCTCGTCTGCCCAGACCTCC 14064 Query 196130 GTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGT 196189 | ||||| || || |||| || || || |||||||| || | || |||||||| || Sbjct 14063 ATCGAGATCGACTCCCTGTTCGAGGGTATCGACTTCTACACCTCCATCACCCGTGCTCGC 14004 Query 196190 TTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTT 196249 || || ||| | | || |||| | || | || || || | || ||| Sbjct 14003 TTCGAGGAGCTTTGCCAGGACCTGTTCCGCTCTACCATCCAGCCCGTCGACCGTGTCCTT 13944 Query 196250 CGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACC 196309 ||||| ||| | || ||||| |||| | || || ||||| || ||||| || ||| Sbjct 13943 ACCGACGCCAAGGTCGACAAGTCCCAGGTCCACGAGATCGTCCTGGTCGGAGGTTCCACC 13884 Query 196310 CGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAA 196369 ||||| || | || || | | || || |||||| || || ||||| Sbjct 13883 CGTATCCCCCGTGTCCAGAAGCTCATCTCCGACTACTTCAACGGCAAGGAGCCCAACAAG 13824 Query 196370 ACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCA 196429 | |||||||| ||||| || ||||| || ||||| || || ||||| || ||||| || Sbjct 13823 TCCATCAACCCCGATGAGGCTGTTGCCTACGGTGCCGCTGTCCAGGCCGCCATTCTGTCC 13764 Query 196430 GGTGTT---GACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCC 196486 |||| | | || | | | | || | || || || || || || || | ||| Sbjct 13763 GGTGATACCTCCTCCAAGAGCACCAACGAGATCCTTCTTCTCGACGTCGCTCCTCTGTCC 13704 Query 196487 CTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATT 196546 || ||| |||| || || ||||| | ||||| || | ||| | ||||| || || Sbjct 13703 CTCGGTATTGAGACTGCTGGTGGCATGATGACCAAGCTCATTCCCCGCAACACCACCATC 13644 Query 196547 CCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATT 196606 || || |||||| | ||||| || || | || || || || || ||||| | || Sbjct 13643 CCTACCAAGAAGTCCGAGGTCTTCTCCACCTTCTCTGACAACCAGCCCGGTGTCCTCATC 13584 Query 196607 CAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCGAT 196666 || || || || || || ||| || | ||||| ||| | || || || | ||||| Sbjct 13583 CAGGTCTACGAGGGTGAGCGCCAGCGCACCAAGGACAACAACCTTCTCGGCAAGTTCGAG 13524 Query 196667 TTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATA 196726 | || || ||||| | || ||| | |||||||| |||||| | || |||||| | Sbjct 13523 CTTACCGGCATTCCCCCCGCCCCCCGTGGTGTTCCCCAGATTGAGGTCACCTTCGACCTT 13464 Query 196727 GACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAG 196786 ||||| || ||||| | |||||| | || | || |||| | | ||||| || | ||| Sbjct 13463 GACGCCAACGGAATCATGAACGTCTCCGCCGTCGAGAAGGGTACCGGCAAGTCCAACAAG 13404 Query 196787 ATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAA 196846 ||||| || ||||| |||||||| || |||||||||||||| ||||| || ||| || Sbjct 13403 ATTGTCATCACCAACGACAAGGGCCGCCTTTCTAAGGAGGACATTGAGCGCATGCTTGCT 13344 Query 196847 GATGCGGAAAAGTACAGGGAAGAAGACGAGG 196877 || || || |||| || ||| || || |||| Sbjct 13343 GAGGCCGAGAAGTTCAAGGATGAGGATGAGG 13313 >seq866 Length=7889 Score = 192 bits (212), Expect = 8e-44 Identities = 166/206 (81%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 171884 TTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAG 171943 |||| || || || ||||| |||||||| ||||| || || || ||||| ||| |||| Sbjct 2153 TTACCGGCAAGACCATCACTCTCGAGGTCGAGTCATCCGATACCATCGACAACGTCAAGT 2212 Query 171944 CCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTA 172003 ||||||||||||| ||||| |||||||| ||||||||||| || || ||||| ||||| | Sbjct 2213 CCAAGATTCAAGACAAGGAGGGCATTCCCCCCGATCAGCAGCGTCTCATTTTCGCTGGCA 2272 Query 172004 AACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTAC 172063 |||||||||| || || || |||||| | || |||||| | || ||||||||||| || | Sbjct 2273 AACAGCTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCTACCCTTC 2332 Query 172064 ACCTTGTTCTAAGGCTTCGGGGTGGT 172089 || | ||||| | ||||| |||||| Sbjct 2333 ACTTGGTTCTCCGCCTTCGTGGTGGT 2358 Score = 168 bits (186), Expect = 9e-37 Identities = 177/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||| ||||| ||||| || |||||||| || || ||||| ||||||||||| | Sbjct 2640 GTGGTATGCAGATCTTCGTGAAGACTCTTACTGGCAAGACAATCACGCTCGAGGTTGAAT 2699 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | |||||||| || || ||| | || | ||||| ||||||||||| || || || |||| Sbjct 2700 CTTCAGACACCATTGACAACGTTAAGTCGAAGATCCAAGATAAGGAGGGTATCCCCCCCG 2759 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 | ||||| || | || || || || || |||||||| || || || || | | || | Sbjct 2760 ACCAGCAGCGCTTGATCTTCGCCGGAAAGCAGCTTGAGGACGGTCGCACGTTGTCGGACT 2819 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 ||||| | || ||||||||||| || || ||||| || | || || |||||| Sbjct 2820 ACAACATCCAGAAGGAGTCTACCCTGCATCTTGTCCTCCGTCTGCGTGGTGGT 2872 >seq1170 Length=97779 Score = 105 bits (116), Expect = 9e-18 Identities = 464/720 (64%), Gaps = 27/720 (4%) Strand=Plus/Plus Query 78050 CACGCAACACCTACTTTGTTTAATGCAGGTACTCCCC-GTCCACAGATGTCATCTTGTTT 78108 ||||| | || || | || ||||| ||||| || | || | ||| |||| || || || Sbjct 59408 CACGCCTCCCCCACACTTTTCAATGCCGGTACCCCTCAGTGC-CAGCTGTCTTCATGCTT 59466 Query 78109 CCTACTTGCAAATAAGGAGGACTCTATTAATGGTATATACGGGACTCTCACAGAG-TGTG 78167 ||| | | | ||||| ||||| ||| | ||||| |||| || |||| ||| || | Sbjct 59467 CCTCGTCGACATGAAGGAAGACTCCATTGAGGGTATCTACGACACCCTCA-AGACCTGCG 59525 Query 78168 CTCAGATTTCTAAGTGGGCTGGTGGTATAGGTCTTCATATTCACGATGTTCGTGCAAACA 78227 | ||| || ||| ||||||||| || || || | |||| | | ||||| | Sbjct 59526 CCATGATCTCCAAGATGGCTGGTGGCATTGGCCTCAACGCTCACCGTATCCGTGCCACTG 59585 Query 78228 AGTCCAGGATTAGAGGAACTAATGGTCAGTCTGATGGAATTATTCCTATGCTTAGGGTAT 78287 ||| ||| || || || || ||| | || | ||||| |||||| | || | Sbjct 59586 GCTCCTACATTGCCGGCACCAACGGCACCTCTAACGGCGTCATTCCCATGCTTCGTGTCT 59645 Query 78288 TCAATGCTACAGCACGCTATGTCAACCAAGCGGGTCGTAGGAAGGG-----GT-CATTCG 78341 |||| || || ||||| ||| |||| |||| | | ||| | || | |||| Sbjct 59646 TCAACAACACTGCTCGCTACGTCGACCA---GGGTGGCAACAAGCGTCCTGGTGCCTTCG 59702 Query 78342 CTATGTACCTTGAACCTTGGCACGCCGATGTAATGGATTTTTTGGAACTTCGTCTCAACC 78401 | || |||||||| || |||||||||||||| | || || |||| | || |||| Sbjct 59703 CCATCTACCTTGAGCCCTGGCACGCCGATGTCTTCGAGTTCATGGACTTGCGCAAGAACC 59762 Query 78402 AGGGTGACGAGGAAGCTCGATGCAGGGATTTATTCACTGCTATGTGGATTCCGGATCTTT 78461 | || | ||||| | || | | || | ||| || | ||||| || ||||| | Sbjct 59763 ACGGCAAGGAGGAGGTCCGTGCCCGTGACCTTTTCCTCGCCCTCTGGATCCCCGATCTGT 59822 Query 78462 TTATGAAGAGAGTTGAGGAAGGA-GGTAAATGGTCTCTTTTCTGTCCAGATAAGACTAAG 78520 | ||||||||||| || |||| | | ||||| | || | || || | || Sbjct 59823 TCATGAAGAGAGTCGA-GAAGAACGCCGAATGGACCCTCATGTGCCCCAACGAGTGCCCC 59881 Query 78521 GGTCTTTCAGATGTATACGGGGAAGAATTCGAAAAATTGTACACTAAATACGA-----AG 78575 || || | || ||||| || || || || |||||| || ||||| || Sbjct 59882 GGCCTGGCTGACTGCTACGGCGAGGAGTTTGAGGCCTTGTACGAAAAGTACGAGCGCGAG 59941 Query 78576 AGGAAGGTCTCGCTATTAAGACAATTGATGCATCTGAA-CTATGGAAAGCTATTATCAAA 78634 | |||| |||| ||||| || | || | ||| || ||| | || || || | Sbjct 59942 GGCAAGG-GTCGC----AAGACCATCAAGGC-CCAGAAGCTTTGGTACGCCATCCTCGAG 59995 Query 78635 AGTCAAACAGAGACCGGCACCCCGTATATGCTATACAAAGACAGCTGTAACAGAAAGTCT 78694 ||| || |||||||||| ||| | ||||| ||||| || | ||| | ||| Sbjct 59996 GCTCAGACTGAGACCGGCAACCCCTTCATGCTTTACAAGGATGCCGCGAACCGCAAGAGC 60055 Query 78695 AACCAAAAGAACCTAGGTGTCATCAAAAGCTCTAACCTTTGCACAGAAATTCTGGAATAC 78754 |||||||||||||| || |||| ||||| ||||| ||||| || ||| | || ||| Sbjct 60056 AACCAAAAGAACCTCGGAACCATCCGCAGCTCCAACCTCTGCACTGAGATTATTGAGTAC 60115 >seq319 Length=46287 Score = 100 bits (110), Expect = 4e-16 Identities = 238/356 (67%), Gaps = 3/356 (1%) Strand=Plus/Minus Query 195632 CCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATG 195691 ||||| || |||| | ||| | ||| |||||||||||| || || | | | Sbjct 2376 CCCGAGGAGGTTTCCGCCATGATCTTGGGCAAGATGAAGGAGGTCGCCGAGGCCTATCTT 2317 Query 195692 GGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGA 195751 || || | |||| | || || || ||||| || || ||||||| || || || Sbjct 2316 GGCAAGAAGGTGACCCACGCCGTCGTCACTGTCCCCGCCTACTTCAACGACAACCAGCGC 2257 Query 195752 CAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAA 195811 ||||| || ||||| || | || ||||| || || ||| ||| | || |||| || Sbjct 2256 CAGGCCACCAAGGATGCCGGTGTCATTGCCGGACTTAACGTTCTCCGCGTTGTCAACGAG 2197 Query 195812 CCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTA 195871 || || || || || || || || ||||| ||||||| | | | || | | || || Sbjct 2196 CCCACCGCCGCCGCTATCGCCTACGGTCTTGACAAGACCGACGGTGA-GCGCCAGAT-TA 2139 Query 195872 TTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGT 195931 | | ||| || || ||||||||||| || ||||| || ||||| || || || Sbjct 2138 TCG-TCTACGACCTTGGTGGTGGTACTTTCGATGTTTCTCTTCTGTCCATCGACCAGGGC 2080 Query 195932 ATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 | ||||| || |||||| || ||||| || || | |||||||| |||||||| Sbjct 2079 GTCTTCGAGGTCCTGGCTACCGCCGGTGACACCCACTTGGGTGGTGAGGATTTCGA 2024 >seq607 Length=5268 Score = 96.9 bits (106), Expect = 5e-15 Identities = 273/405 (67%), Gaps = 21/405 (5%) Strand=Plus/Minus Query 198549 ATCCCACGTGGTGCTCTTCTCGCCGGTGCCCCGGGTACTGGTAAAACCCTTCTAGCTCGT 198608 || || |||||||| | |||||||| | || || || ||||| || | || || Sbjct 3530 ATTCCTCGTGGTGCCATCCTCGCCGGACCTCCTGGAACCGGTAAGACGTTGCTTGCCAAG 3471 Query 198609 GCTATCGCGGGTGAATCGAGTGTCCCCTTTCTTCAGTGCTCCGCGG---CGAGTTTCATC 198665 || | ||| || || || |||| ||||| |||||| | || | || |||||| | || Sbjct 3470 GCCACCGCTGGCGAGTCTGGTGTGCCCTT-CTTCAGCG-TCAGTGGTTCCGAGTT-CGTC 3414 Query 198666 GAGATGTTCGTTGGTGTTGGTGCTAAGCGCGTCCGGGAACTCTTTGAGCAAGCACGTGAA 198725 |||||||| || ||||||||| || | || || || | |||| | || || | Sbjct 3413 GAGATGTTTGTCGGTGTTGGTCCTTCAAGAGTGCGAGACTTGTTTGCAAACGCCCGCAAG 3354 Query 198726 AATCAACCATGTATCATCTTCATTGATGAGATTGACGCTGTTGGT--AAGAAG-CGTGGT 198782 | | || |||||||||||||||||||| || ||||| ||||| | ||| | | Sbjct 3353 AGTGCCCCCTGTATCATCTTCATTGATGAAATCGACGCCATTGGTCGATCAAGACAGGAA 3294 Query 198783 GGAACTACTACA--CCTGGTAATGATGAGCGTG-AGCAGACGATTAACCAGCTTCTCACT 198839 |||| || || || ||||||||||| | |||| || | |||||| | | || Sbjct 3293 GGAA--ACCGCATGGGCGGCAATGATGAGCGCGAAGCA-ACTCTGAACCAGATCTTGACA 3237 Query 198840 GAGATGGATGGTTT---TGACAATGAGACTGGTATCGTGGTGATTGCTGCTACAAATAGG 198896 |||||||| ||||| | | | ||| | || |||| || | || | || || || Sbjct 3236 GAGATGGACGGTTTCAATACCCAAGAG-CAGG--TCGTTGTCCTCGCGGGCACCAACAGA 3180 Query 198897 ATTGATATCCTAGATGATGCACTGCTTCGTCCCGGTCGATTCGAC 198941 ||||| || || | || ||| | ||||||||||| |||||| Sbjct 3179 GCCGATATTCTTGACAAGGCGCTGATGCGTCCCGGTCGTTTCGAC 3135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657847441853680