Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06- 15] 1,819 sequences; 35,034,269 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq48 120 9e-22 >seq48 Length=78858 Score = 120 bits (132), Expect = 9e-22 Identities = 188/265 (71%), Gaps = 8/265 (3%) Strand=Plus/Minus Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642 ||||| | ||||||||| || ||||| || | || || || || ||||| || | Sbjct 52311 CTTGACGAGACGACGCTGGATGTAACCTGTCTCGGCGGTCTTGACGGCGGTATCGATCAA 52252 Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTA-GCCCCCCAATAA 302701 ||| | | |||| |||| || |||||||| | ||| | || |||| | || | | | Sbjct 52251 ACCTTCTCTACCAGCCATGGCGTGGAAGAAGAACTCG-CTGGGCGTAAGACCACGGAGAT 52193 Query 302702 AGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCA 302761 | ||| |||| ||||||||||| |||||||| || | |||| ||| || ||||| || | Sbjct 52192 ACGAGTTCTCGACGAAACCACGAGCCTCGGGTGAGTAGTCGTCCTTTGTGAAGTGCGGAA 52133 Query 302762 GGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTC---CCA 302818 |||| | || | ||||| | || || |||||||| ||||| | ||||||| ||| Sbjct 52132 GGGTGCGGTATTTGAAGCCGAAAGGAATGCGCTTTCCTTCAACAATTTGCTGTCCGACCA 52073 Query 302819 GGCACGAAATCATCTGCGAAATATT 302843 || | | ||||||| ||||| || Sbjct 52072 GG---GCAGTCATCTGGGAAATGTT 52051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471783297911003