Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06-
15] 1,819 sequences; 35,034,269 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq48 120 9e-22
>seq48
Length=78858
Score = 120 bits (132), Expect = 9e-22
Identities = 188/265 (71%), Gaps = 8/265 (3%)
Strand=Plus/Minus
Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642
||||| | ||||||||| || ||||| || | || || || || ||||| || |
Sbjct 52311 CTTGACGAGACGACGCTGGATGTAACCTGTCTCGGCGGTCTTGACGGCGGTATCGATCAA 52252
Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTA-GCCCCCCAATAA 302701
||| | | |||| |||| || |||||||| | ||| | || |||| | || | | |
Sbjct 52251 ACCTTCTCTACCAGCCATGGCGTGGAAGAAGAACTCG-CTGGGCGTAAGACCACGGAGAT 52193
Query 302702 AGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCA 302761
| ||| |||| ||||||||||| |||||||| || | |||| ||| || ||||| || |
Sbjct 52192 ACGAGTTCTCGACGAAACCACGAGCCTCGGGTGAGTAGTCGTCCTTTGTGAAGTGCGGAA 52133
Query 302762 GGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTC---CCA 302818
|||| | || | ||||| | || || |||||||| ||||| | ||||||| |||
Sbjct 52132 GGGTGCGGTATTTGAAGCCGAAAGGAATGCGCTTTCCTTCAACAATTTGCTGTCCGACCA 52073
Query 302819 GGCACGAAATCATCTGCGAAATATT 302843
|| | | ||||||| ||||| ||
Sbjct 52072 GG---GCAGTCATCTGGGAAATGTT 52051
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471783297911003
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |