Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06- 15] 1,819 sequences; 35,034,269 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1170 192 7e-43 seq41 132 6e-25 seq1142 96.9 4e-14 >seq1170 Length=97779 Score = 192 bits (212), Expect = 7e-43 Identities = 337/489 (69%), Gaps = 15/489 (3%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||||||||||||||| || |||| ||| ||||| || |||||||| | || |||||| || Sbjct 59674 CTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACGCCGTTAGA 59615 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 |||||||||||| || | ||||| ||| | ||| || | ||| ||| | ||| Sbjct 59614 GGTGCCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCACGGATACGGTGAGCGTTGAGGCC 59555 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||||| || ||| ||||||||| | ||||| ||||| ||||||||||| ||||| Sbjct 59554 AATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCCTC 59495 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||||| |||||||||| ||||| ||||| || || || || | || || Sbjct 59494 AATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAGGGGTACC 59435 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 ||| ||||| || ||||| | || ||||| |||| | |||||| || |||||| Sbjct 59434 GGCATTGAAAAGTGTGGGGGAGGCGTGTGTGAAGAACTTGCTGGACATGAGGTTGTAGGT 59375 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 ||| |||||| | | ||||||| || ||| || |||| ||||| Sbjct 59374 CTCGATGACGCGCTCAA---CATCGTC-------GC---CCC--AGATACCGACTGCGAC 59330 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484 ||||||| ||||| ||| || | |||| | | |||| | |||| |||||| || Sbjct 59329 ACGCATGATCATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCGAGCTTGAGCAGGTATGA 59270 Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGATGGC 1630544 | || ||| ||| ||| ||||| || || |||||||||| | |||||| Sbjct 59269 TCTCTCCAGAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACGATGGC 59210 Query 1630545 GGCGTCGAG 1630553 | ||| || Sbjct 59209 AGAGTCTAG 59201 >seq41 Length=44290 Score = 132 bits (146), Expect = 6e-25 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 1574008 TCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCG 1574067 |||||||||| ||||| |||||| | |||| |||| | || |||||| | | Sbjct 36055 TCGACGTCGTTCGCAACCGTATCAAGGGCTTCGCCCAGAAGAAGGTCACCCTGCCCCAGG 36114 Query 1574068 GACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGG 1574127 | ||||||||| | |||||||||||||||||||| || | || || | |||||||||| Sbjct 36115 GCCGCCACAAGCTCGTCATCCTCGACGAGGCCGACAGCATGACATCAGGCGCCCAGCAGG 36174 Query 1574128 CCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACA 1574187 |||| || || ||||||| || |||||||||||||||| ||| | || || ||| Sbjct 36175 CCCTCCGCCGGACAATGGAAATCTACTCCAACACGACGCGCTTCGCCTTCGCTTGTAACC 36234 Query 1574188 CGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCT 1574238 ||| | | |||||||| | || || || |||||||| || |||| Sbjct 36235 AGTCCAACAAGATCATCGAGCCGCTGCAGTCACGATGCGCCATCCTCCGCT 36285 >seq1142 Length=81699 Score = 96.9 bits (106), Expect = 4e-14 Identities = 239/353 (68%), Gaps = 15/353 (4%) Strand=Plus/Plus Query 1726693 GGCGGCGGCGCGCACGGCGTCGAGTGCCGTCGCC-ACGCTCCCGTCGGTGCCGTTCTTGA 1726751 ||| ||||||| | |||||| | || || |||| | | | ||||||||||||||||||| Sbjct 24147 GGCCGCGGCGCCAATGGCGTCAA-TGGCGACGCCGAGGTTGCCGTCGGTGCCGTTCTTGA 24205 Query 1726752 AGCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGCACCTGGCTCTCGGTCGTGC 1726811 |||||| || | | ||| | || || | ||||||||| | |||| ||| || |||| Sbjct 24206 AGCCGACGGGGAAGGACAGGCCGGAGGCGAGCTCGCGGTGGAGCTGGGACTCTGTGGTGC 24265 Query 1726812 GCGCGCCCACGGCGCCCCACGCCACCAGGTCTGCCA--AATAAGGGGCCACCAGA--GGA 1726867 | ||||| | ||| ||| | | | ||| || | || |||| ||| | Sbjct 24266 GGGCGCCGATGGCACCCACAGAAATGAAGTCGGCGAGGAACTGGGGG----GAGATTGTG 24321 Query 1726868 CTGAGAAACTCGACGGCCACGGGCTGATCGACGG-CGACGACGAGATCGCGCAACAGGCG 1726926 ||| | ||| ||| | |||| || | ||| || || ||| |||| || || | Sbjct 24322 TCGAGCATTTCGCTGGCGATGGGC--AT-GCCGGCCGTCG-TGAGGTCGCTGAAGAGCTG 24377 Query 1726927 GCGCGACGCCGTCAGGCCGTCGGCCAGGCGGCACGACCCGTCGAGGTCGGGGTCGCTGGC 1726986 ||| || |||||| | | | | | | ||||| ||| |||||| || Sbjct 24378 GCGGGAGATGCGCAGGCCCTTGTTGATCTTGAAGGTGGAGTCGATGTCCGGGTCGTTGAT 24437 Query 1726987 CAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGCGCGCATGA 1727039 ||||||||||| |||||||| ||||||||||| |||| ||||||||||||| Sbjct 24438 GAGGCCCTTCCAGCCGACGGTGGTGCGCGGCTTCTCGAGGTAGGCGCGCATGA 24490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106989924341623