Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06-
15] 1,819 sequences; 35,034,269 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq1170 192 7e-43
seq41 132 6e-25
seq1142 96.9 4e-14
>seq1170
Length=97779
Score = 192 bits (212), Expect = 7e-43
Identities = 337/489 (69%), Gaps = 15/489 (3%)
Strand=Plus/Minus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
||||||||||||||| || |||| ||| ||||| || |||||||| | || |||||| ||
Sbjct 59674 CTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACGCCGTTAGA 59615
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
|||||||||||| || | ||||| ||| | ||| || | ||| ||| | |||
Sbjct 59614 GGTGCCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCACGGATACGGTGAGCGTTGAGGCC 59555
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
||||| || ||| ||||||||| | ||||| ||||| ||||||||||| |||||
Sbjct 59554 AATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCCTC 59495
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
|| ||||| |||||||||| ||||| ||||| || || || || | || ||
Sbjct 59494 AATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAGGGGTACC 59435
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
||| ||||| || ||||| | || ||||| |||| | |||||| || ||||||
Sbjct 59434 GGCATTGAAAAGTGTGGGGGAGGCGTGTGTGAAGAACTTGCTGGACATGAGGTTGTAGGT 59375
Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424
||| |||||| | | ||||||| || ||| || |||| |||||
Sbjct 59374 CTCGATGACGCGCTCAA---CATCGTC-------GC---CCC--AGATACCGACTGCGAC 59330
Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484
||||||| ||||| ||| || | |||| | | |||| | |||| |||||| ||
Sbjct 59329 ACGCATGATCATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCGAGCTTGAGCAGGTATGA 59270
Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGATGGC 1630544
| || ||| ||| ||| ||||| || || |||||||||| | ||||||
Sbjct 59269 TCTCTCCAGAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACGATGGC 59210
Query 1630545 GGCGTCGAG 1630553
| ||| ||
Sbjct 59209 AGAGTCTAG 59201
>seq41
Length=44290
Score = 132 bits (146), Expect = 6e-25
Identities = 168/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 1574008 TCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCG 1574067
|||||||||| ||||| |||||| | |||| |||| | || |||||| | |
Sbjct 36055 TCGACGTCGTTCGCAACCGTATCAAGGGCTTCGCCCAGAAGAAGGTCACCCTGCCCCAGG 36114
Query 1574068 GACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGG 1574127
| ||||||||| | |||||||||||||||||||| || | || || | ||||||||||
Sbjct 36115 GCCGCCACAAGCTCGTCATCCTCGACGAGGCCGACAGCATGACATCAGGCGCCCAGCAGG 36174
Query 1574128 CCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACA 1574187
|||| || || ||||||| || |||||||||||||||| ||| | || || |||
Sbjct 36175 CCCTCCGCCGGACAATGGAAATCTACTCCAACACGACGCGCTTCGCCTTCGCTTGTAACC 36234
Query 1574188 CGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCT 1574238
||| | | |||||||| | || || || |||||||| || ||||
Sbjct 36235 AGTCCAACAAGATCATCGAGCCGCTGCAGTCACGATGCGCCATCCTCCGCT 36285
>seq1142
Length=81699
Score = 96.9 bits (106), Expect = 4e-14
Identities = 239/353 (68%), Gaps = 15/353 (4%)
Strand=Plus/Plus
Query 1726693 GGCGGCGGCGCGCACGGCGTCGAGTGCCGTCGCC-ACGCTCCCGTCGGTGCCGTTCTTGA 1726751
||| ||||||| | |||||| | || || |||| | | | |||||||||||||||||||
Sbjct 24147 GGCCGCGGCGCCAATGGCGTCAA-TGGCGACGCCGAGGTTGCCGTCGGTGCCGTTCTTGA 24205
Query 1726752 AGCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGCACCTGGCTCTCGGTCGTGC 1726811
|||||| || | | ||| | || || | ||||||||| | |||| ||| || ||||
Sbjct 24206 AGCCGACGGGGAAGGACAGGCCGGAGGCGAGCTCGCGGTGGAGCTGGGACTCTGTGGTGC 24265
Query 1726812 GCGCGCCCACGGCGCCCCACGCCACCAGGTCTGCCA--AATAAGGGGCCACCAGA--GGA 1726867
| ||||| | ||| ||| | | | ||| || | || |||| ||| |
Sbjct 24266 GGGCGCCGATGGCACCCACAGAAATGAAGTCGGCGAGGAACTGGGGG----GAGATTGTG 24321
Query 1726868 CTGAGAAACTCGACGGCCACGGGCTGATCGACGG-CGACGACGAGATCGCGCAACAGGCG 1726926
||| | ||| ||| | |||| || | ||| || || ||| |||| || || |
Sbjct 24322 TCGAGCATTTCGCTGGCGATGGGC--AT-GCCGGCCGTCG-TGAGGTCGCTGAAGAGCTG 24377
Query 1726927 GCGCGACGCCGTCAGGCCGTCGGCCAGGCGGCACGACCCGTCGAGGTCGGGGTCGCTGGC 1726986
||| || |||||| | | | | | | ||||| ||| |||||| ||
Sbjct 24378 GCGGGAGATGCGCAGGCCCTTGTTGATCTTGAAGGTGGAGTCGATGTCCGGGTCGTTGAT 24437
Query 1726987 CAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGCGCGCATGA 1727039
||||||||||| |||||||| ||||||||||| |||| |||||||||||||
Sbjct 24438 GAGGCCCTTCCAGCCGACGGTGGTGCGCGGCTTCTCGAGGTAGGCGCGCATGA 24490
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106989924341623
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |