Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06-
15] 1,819 sequences; 35,034,269 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq1170 125 6e-24
seq866 100 3e-16
>seq1170
Length=97779
Score = 125 bits (138), Expect = 6e-24
Identities = 958/1528 (63%), Gaps = 62/1528 (4%)
Strand=Plus/Minus
Query 138508 ACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAAC 138567
||||| || || ||||| | || || || ||| |||||| |||| | ||||| ||
Sbjct 60720 ACCTGGAACTCGCCGGCGAGAACACGGCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAG 60661
Query 138568 GATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGA 138627
| |||||||| |||| ||||| | |||| || || |||||| || || | | |
Sbjct 60660 CACTCGTTGTTGCCCAAGATCTGGGAAGTGGAGGCAGTAGGCATGGGAGCAACAAGCAAA 60601
Query 138628 GAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAATCG 138687
|| || | |||||| ||||||| | ||||| || || ||||||||| | ||
Sbjct 60600 CTGTTGCGAACACCGTGCTCCTTGATTTGCTCCTTCAGAGAGTCCCAGTCCCAGAGGTCA 60541
Query 138688 CTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAA--ACTTGCGGGACTGCCTT 138745
|| || |||||||| |||||||| | || ||| | | |||| ||| |
Sbjct 60540 GAGGGCTTGACATTCCACATGTCGTACTGAAGGATACCCTGGGAGATAGGGGA--GCCCT 60483
Query 138746 CGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCG--CCTCG--AGCGCA 138801
|||||| ||| ||| ||| |||| |||| || | | | || ||
Sbjct 60482 CGTACGTGGAGTAGGTACCCTCCTCCCTGGCCA----GTTGAACGGACATGGTCAGAGCG 60427
Query 138802 CCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTAC 138861
| | ||| || || || ||||| || |||||| || ||||| | |||| |
Sbjct 60426 GCGTGGTAGATGGTCTCAAAAATCTTCTTATTGAGATCGCGAGCCTCAGGAGACTCGAAA 60367
Query 138862 GGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGA 138921
||||||||||| ||| || || || || || || || || | |||| |||||
Sbjct 60366 GGCATGCGGAGGGCGAGGAAGGCATCAGCAAGACCCTGGACACCAAGACCGATGGGGCGG 60307
Query 138922 TGGCGCAGATTTGACGCTTTTGCG-GCTTCGATA---GGATAATAGTTTACATCGATGAT 138977
|| |||| || ||| ||||| || || | || || | ||| ||||| |||||
Sbjct 60306 TGACGCATGTT----GCTGTTGCGAGCCTCAGGAACGGGGTAGTGGTTGACATCAATGAT 60251
Query 138978 TTTGTTTAAATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGT-TCAAAATCGTATG 139036
||||| | || || || || |||| ||| | | | || | | | ||||||||
Sbjct 60250 CTTGTTCAGGTTGCGAACAACGACCTGAGTGACCT-CGTGAAGCTTCTGGAAATCGTAAA 60192
Query 139037 TGCCCCCGTTGTCGTCGACGACG-TCGACAAATTTGTTGACACAAATCGAGGCTATGTTG 139095
||| | |||| ||| |||| | | | || | || | ||||| | ||||
Sbjct 60191 CACCCTCATTGTAGTCAACGAAGGTAGGCAG-------GGCAAGA---GAGGCCAAGTTG 60142
Query 139096 CACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACAC 139155
|| || || || || |||||| ||| ||| || | ||| || | || | || |
Sbjct 60141 CAGACAGCGACCTCATCGGGGGCGCAGTACTCAATAATCTCAGTGCAGAGGTTGGAGCTG 60082
Query 139156 TTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATA 139215
||| || || | || | ||| ||||| || ||||| ||||| |||||||||||
Sbjct 60081 CGGATGGTTCCGAGGTTCTTTTGGTTGCTCTTGCGGTTCGCGGCATCCTTGTAAAGCATG 60022
Query 139216 TACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAG--TC----CCTA 139269
| || |||| || || || | ||| | ||| | | ||| || |||
Sbjct 60021 AAGGGGTTGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTACCA-AAGCTTCTGGGCCTT 59963
Query 139270 GCTTGTATTT-GACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAA 139328
| | || || ||| | | | |||||||||||||||||||| | | || ||
Sbjct 59962 GATGGTCTTGCGACCCTTGC------CCTCGCGCTCGTACTTTTCGTACAAGGCCTCAAA 59909
Query 139329 TCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATAC 139388
|| |||||| ||||| || || | |||| || || |||||||| | |||| |
Sbjct 59908 CTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGGCACATGAGGGTCCATTC 59849
Query 139389 GCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATC 139448
| ||||| || ||| | | ||||||||||||| || ||||| | |||| | | ||
Sbjct 59848 GGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGGGCGAGGAAAAGGTC 59789
Query 139449 GCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTC 139508
|| || || ||| || ||| || || | ||| || || || ||
Sbjct 59788 ACGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAACTCGAAGACATC 59729
Query 139509 AGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCG---TTTGCCACCTTGATC 139565
|||||||| || || || |||||||| | || || || |||||||| || ||
Sbjct 59728 GGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCACCAGGACGCTTGTTGCCACCCTGGTC 59669
Query 139566 GACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCC 139625
||||| || ||| || ||||| || || | ||| || | ||| | | || ||
Sbjct 59668 GACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACGCCGTTAGAGGTGCC 59609
Query 139626 GTTGGTGCTACGG--ATG--GGA-CTGTTGCGAGCTCGGACGTCATGTACATTGATGCCG 139680
|||||||| ||| ||| ||| | || || |||| || | |||| |||
Sbjct 59608 GTTGGTGC--CGGCAATGTAGGAGCCAGTG---GCACGGATACGGTGAGCGTTGAGGCCA 59554
Query 139681 ATTCCGCCGCCAAATTTGGATATTAAAACGCA-ATCGCGTAATGTCTCGTATATACCTCT 139739
|| || || | | ||||| || | |||| || | | || ||||| |||||
Sbjct 59553 ATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTG-AGGGTGTCGTAGATACCCTC 59495
Query 139740 TATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCC 139799
||| ||| |||| ||| ||| || |||||||| || || || | || ||
Sbjct 59494 AATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAGGGGTACC 59435
Query 139800 GGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGT 139859
||| || || || || ||||| ||||| | | | ||||| | | ||| ||
Sbjct 59434 GGCATTGAAAAGTGTGGGGGAGGCGTGTGTGAAGAACTTGCTGGACATGAGGTTGTAGGT 59375
Query 139860 TTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATG 139919
|||||| ||| | ||| ||| || ||||||||| | ||| ||||| | ||| ||
Sbjct 59374 CTCGATGACGCGCTCAACATCGTCGCCCCAGATACCGACTGCGACACGCATGATCATGTG 59315
Query 139920 TTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATAACCGTTCTCTAGGGTCTT 139979
|| | ||||| | | ||| |||| || ||| || |||| || |||||
Sbjct 59314 CTGCGGTCTCTCGGCAATCTTGCCGTCGAGCTTGAGCAGGTATGATCTCTCCAGAGTCTT 59255
Query 139980 GTAGCCAAAGTACCTATAGTTGAAATCG 140007
| |||| ||||| |||||||| |||
Sbjct 59254 GAAGCCGAAGTATTGGTAGTTGAAGTCG 59227
>seq866
Length=7889
Score = 100 bits (110), Expect = 3e-16
Identities = 150/209 (72%), Gaps = 3/209 (1%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || || || || || || || |||||||| || ||| | |
Sbjct 2645 ATGCAGATCTTCGTGAAGACTCTTACTGGCAAGACAATCACGCTCGAGGTTGAATCTTCA 2704
Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| | || |||| ||| | ||||||||||| || || || || || ||||| ||
Sbjct 2705 GACACCATTGACAACGTTAAGTC-GAAGATCCAAGATAAGGAGGGTATCCCCCCCGACCA 2763
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|| || |||||||| ||||| || ||||| ||||| | | |||| || || ||
Sbjct 2764 GCAGCGCTTGATCTTCGCCGGAAAGCAGCTTGAGGACGGTCGCACGTTGTCGGACTACAA 2823
Query 24883 CATTCAAAAGGAATCGACACTACA-CTTG 24910
||| || ||||| || || || || ||||
Sbjct 2824 CATCCAGAAGGAGTCTACCCTGCATCTTG 2852
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847
||||| || ||||| || || || ||||| || || || |||||||||||||| || ||
Sbjct 2501 AAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAGCAGCGTTTGATCTTTGCTGGCAAG 2560
Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907
|| || |||||| | | | | || || || |||||||| ||||| || || || |||
Sbjct 2561 CAACTTGAGGATGGCCGCACCCTCTCCGACTACAACATTCAGAAGGAGTCCACGCTCCAC 2620
Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930
||||| | || | ||||| ||
Sbjct 2621 TTGGTTCTCCGTCTTCGCGGTGG 2643
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449887370453320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |