Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06- 15] 1,819 sequences; 35,034,269 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1170 125 6e-24 seq866 100 3e-16 >seq1170 Length=97779 Score = 125 bits (138), Expect = 6e-24 Identities = 958/1528 (63%), Gaps = 62/1528 (4%) Strand=Plus/Minus Query 138508 ACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAAC 138567 ||||| || || ||||| | || || || ||| |||||| |||| | ||||| || Sbjct 60720 ACCTGGAACTCGCCGGCGAGAACACGGCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAG 60661 Query 138568 GATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGA 138627 | |||||||| |||| ||||| | |||| || || |||||| || || | | | Sbjct 60660 CACTCGTTGTTGCCCAAGATCTGGGAAGTGGAGGCAGTAGGCATGGGAGCAACAAGCAAA 60601 Query 138628 GAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAATCG 138687 || || | |||||| ||||||| | ||||| || || ||||||||| | || Sbjct 60600 CTGTTGCGAACACCGTGCTCCTTGATTTGCTCCTTCAGAGAGTCCCAGTCCCAGAGGTCA 60541 Query 138688 CTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAA--ACTTGCGGGACTGCCTT 138745 || || |||||||| |||||||| | || ||| | | |||| ||| | Sbjct 60540 GAGGGCTTGACATTCCACATGTCGTACTGAAGGATACCCTGGGAGATAGGGGA--GCCCT 60483 Query 138746 CGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCG--CCTCG--AGCGCA 138801 |||||| ||| ||| ||| |||| |||| || | | | || || Sbjct 60482 CGTACGTGGAGTAGGTACCCTCCTCCCTGGCCA----GTTGAACGGACATGGTCAGAGCG 60427 Query 138802 CCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTAC 138861 | | ||| || || || ||||| || |||||| || ||||| | |||| | Sbjct 60426 GCGTGGTAGATGGTCTCAAAAATCTTCTTATTGAGATCGCGAGCCTCAGGAGACTCGAAA 60367 Query 138862 GGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGA 138921 ||||||||||| ||| || || || || || || || || | |||| ||||| Sbjct 60366 GGCATGCGGAGGGCGAGGAAGGCATCAGCAAGACCCTGGACACCAAGACCGATGGGGCGG 60307 Query 138922 TGGCGCAGATTTGACGCTTTTGCG-GCTTCGATA---GGATAATAGTTTACATCGATGAT 138977 || |||| || ||| ||||| || || | || || | ||| ||||| ||||| Sbjct 60306 TGACGCATGTT----GCTGTTGCGAGCCTCAGGAACGGGGTAGTGGTTGACATCAATGAT 60251 Query 138978 TTTGTTTAAATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGT-TCAAAATCGTATG 139036 ||||| | || || || || |||| ||| | | | || | | | |||||||| Sbjct 60250 CTTGTTCAGGTTGCGAACAACGACCTGAGTGACCT-CGTGAAGCTTCTGGAAATCGTAAA 60192 Query 139037 TGCCCCCGTTGTCGTCGACGACG-TCGACAAATTTGTTGACACAAATCGAGGCTATGTTG 139095 ||| | |||| ||| |||| | | | || | || | ||||| | |||| Sbjct 60191 CACCCTCATTGTAGTCAACGAAGGTAGGCAG-------GGCAAGA---GAGGCCAAGTTG 60142 Query 139096 CACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACAC 139155 || || || || || |||||| ||| ||| || | ||| || | || | || | Sbjct 60141 CAGACAGCGACCTCATCGGGGGCGCAGTACTCAATAATCTCAGTGCAGAGGTTGGAGCTG 60082 Query 139156 TTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATA 139215 ||| || || | || | ||| ||||| || ||||| ||||| ||||||||||| Sbjct 60081 CGGATGGTTCCGAGGTTCTTTTGGTTGCTCTTGCGGTTCGCGGCATCCTTGTAAAGCATG 60022 Query 139216 TACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAG--TC----CCTA 139269 | || |||| || || || | ||| | ||| | | ||| || ||| Sbjct 60021 AAGGGGTTGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTACCA-AAGCTTCTGGGCCTT 59963 Query 139270 GCTTGTATTT-GACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAA 139328 | | || || ||| | | | |||||||||||||||||||| | | || || Sbjct 59962 GATGGTCTTGCGACCCTTGC------CCTCGCGCTCGTACTTTTCGTACAAGGCCTCAAA 59909 Query 139329 TCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATAC 139388 || |||||| ||||| || || | |||| || || |||||||| | |||| | Sbjct 59908 CTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGGCACATGAGGGTCCATTC 59849 Query 139389 GCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATC 139448 | ||||| || ||| | | ||||||||||||| || ||||| | |||| | | || Sbjct 59848 GGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGGGCGAGGAAAAGGTC 59789 Query 139449 GCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTC 139508 || || || ||| || ||| || || | ||| || || || || Sbjct 59788 ACGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAACTCGAAGACATC 59729 Query 139509 AGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCG---TTTGCCACCTTGATC 139565 |||||||| || || || |||||||| | || || || |||||||| || || Sbjct 59728 GGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCACCAGGACGCTTGTTGCCACCCTGGTC 59669 Query 139566 GACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCC 139625 ||||| || ||| || ||||| || || | ||| || | ||| | | || || Sbjct 59668 GACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACGCCGTTAGAGGTGCC 59609 Query 139626 GTTGGTGCTACGG--ATG--GGA-CTGTTGCGAGCTCGGACGTCATGTACATTGATGCCG 139680 |||||||| ||| ||| ||| | || || |||| || | |||| ||| Sbjct 59608 GTTGGTGC--CGGCAATGTAGGAGCCAGTG---GCACGGATACGGTGAGCGTTGAGGCCA 59554 Query 139681 ATTCCGCCGCCAAATTTGGATATTAAAACGCA-ATCGCGTAATGTCTCGTATATACCTCT 139739 || || || | | ||||| || | |||| || | | || ||||| ||||| Sbjct 59553 ATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTG-AGGGTGTCGTAGATACCCTC 59495 Query 139740 TATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCC 139799 ||| ||| |||| ||| ||| || |||||||| || || || | || || Sbjct 59494 AATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAGGGGTACC 59435 Query 139800 GGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGT 139859 ||| || || || || ||||| ||||| | | | ||||| | | ||| || Sbjct 59434 GGCATTGAAAAGTGTGGGGGAGGCGTGTGTGAAGAACTTGCTGGACATGAGGTTGTAGGT 59375 Query 139860 TTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATG 139919 |||||| ||| | ||| ||| || ||||||||| | ||| ||||| | ||| || Sbjct 59374 CTCGATGACGCGCTCAACATCGTCGCCCCAGATACCGACTGCGACACGCATGATCATGTG 59315 Query 139920 TTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATAACCGTTCTCTAGGGTCTT 139979 || | ||||| | | ||| |||| || ||| || |||| || ||||| Sbjct 59314 CTGCGGTCTCTCGGCAATCTTGCCGTCGAGCTTGAGCAGGTATGATCTCTCCAGAGTCTT 59255 Query 139980 GTAGCCAAAGTACCTATAGTTGAAATCG 140007 | |||| ||||| |||||||| ||| Sbjct 59254 GAAGCCGAAGTATTGGTAGTTGAAGTCG 59227 >seq866 Length=7889 Score = 100 bits (110), Expect = 3e-16 Identities = 150/209 (72%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || |||||||| || ||| | | Sbjct 2645 ATGCAGATCTTCGTGAAGACTCTTACTGGCAAGACAATCACGCTCGAGGTTGAATCTTCA 2704 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| ||| | ||||||||||| || || || || || ||||| || Sbjct 2705 GACACCATTGACAACGTTAAGTC-GAAGATCCAAGATAAGGAGGGTATCCCCCCCGACCA 2763 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || |||||||| ||||| || ||||| ||||| | | |||| || || || Sbjct 2764 GCAGCGCTTGATCTTCGCCGGAAAGCAGCTTGAGGACGGTCGCACGTTGTCGGACTACAA 2823 Query 24883 CATTCAAAAGGAATCGACACTACA-CTTG 24910 ||| || ||||| || || || || |||| Sbjct 2824 CATCCAGAAGGAGTCTACCCTGCATCTTG 2852 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 ||||| || ||||| || || || ||||| || || || |||||||||||||| || || Sbjct 2501 AAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAGCAGCGTTTGATCTTTGCTGGCAAG 2560 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 || || |||||| | | | | || || || |||||||| ||||| || || || ||| Sbjct 2561 CAACTTGAGGATGGCCGCACCCTCTCCGACTACAACATTCAGAAGGAGTCCACGCTCCAC 2620 Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930 ||||| | || | ||||| || Sbjct 2621 TTGGTTCTCCGTCTTCGCGGTGG 2643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449887370453320