Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06- 15] 1,819 sequences; 35,034,269 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1170 168 1e-35 seq41 159 5e-33 >seq1170 Length=97779 Score = 168 bits (186), Expect = 1e-35 Identities = 343/507 (68%), Gaps = 27/507 (5%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||| ||||| || |||| ||| ||||| || |||||||| | | |||||| || Sbjct 59674 CTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACGCCGTTAGA 59615 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 |||||||||||| || | ||||| ||| | ||| || | ||| ||| | ||| Sbjct 59614 GGTGCCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCACGGATACGGTGAGCGTTGAGGCC 59555 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||||| || ||| ||||||||| | ||||| | || || || |||||||| ||||| Sbjct 59554 AATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCCTC 59495 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGC---GCGCCGT 2073776 || ||||| |||||||||| | || ||||| || || || ||| | | || Sbjct 59494 AATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGA---CAGCTGGCACTGAGGGGT 59438 Query 2073777 GCCGGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTA 2073836 ||||||||||| || ||||| | || ||| | ||| ||||||| | ||| Sbjct 59437 ACCGGCATTGAAAAGTGTGGGGGAGGCGTGTGTGAAGAACTTGCTGGACATGAGGTTGTA 59378 Query 2073837 GGTGGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGC 2073896 ||| ||| |||||| | | | | ||||| || || |||| || Sbjct 59377 GGTCTCGATGACGCGCTCAA---CAT------CGTCG------CCCCAGATACCGACTGC 59333 Query 2073897 GACGCGCATGATCATGTACTGGGGTCGCTCGACGA---CGGCGTCGCGCACCTTGGTCAG 2073953 ||| ||||||||||||| ||| |||| |||| | | | ||||| | |||| ||| Sbjct 59332 GACACGCATGATCATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCG---AGCTTGAGCAG 59276 Query 2073954 GTAGGACCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCG 2074013 ||| || | ||| ||| | ||| ||||| |||| | |||||| |||| | Sbjct 59275 GTATGATCTCTCCAGAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGAC 59216 Query 2074014 GATGGCGGCGTCGAGGGCCTCCTTGTG 2074040 |||||| | ||| || |||||||||| Sbjct 59215 GATGGCAGAGTCTAGCTCCTCCTTGTG 59189 Score = 100 bits (110), Expect = 5e-15 Identities = 263/407 (65%), Gaps = 8/407 (2%) Strand=Plus/Minus Query 2071610 TGGTGCCCAGGTTCTGCTGGTTGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGG 2071669 |||| || ||||||| |||||||| | |||| |||| ||||||| |||||| ||| Sbjct 60077 TGGTTCCGAGGTTCTTTTGGTTGCTCTTGCGGTTCGCGGCATCCTTGTAAAGCATGAAGG 60018 Query 2071670 GCGCACCCGTCTCGATCTGCGCCGTGACGATGGCCGACCAAATTTGGCGCGCGGGCACCG 2071729 | || ||||| |||| ||| || |||||| |||||| || |||| | Sbjct 60017 GGTTGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTACCAAA----GCTTCTGGGCCTTG 59962 Query 2071730 AGGTCCTCGCGCG----GCCCTNNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCG 2071785 | | || ||| ||||| | | ||| ||||| | || Sbjct 59961 ATGGTCTTGCGACCCTTGCCCTCGCGCTCGTACTTTTCGTACAAGGCCTCAAACTCCTCG 59902 Query 2071786 CCGTGGCACTCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCA 2071845 |||| ||| || ||||||||| |||| ||||| | ||| | ||| ||| || Sbjct 59901 CCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGGCACATGAGGGTCCATTCGGCGTTC 59842 Query 2071846 GTCACCACGCGGCGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCC 2071905 || | || | ||| ||||| ||| |||| ||| || || || || || || Sbjct 59841 TTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGGGCGAGGAAAAGGTCACGGGCA 59782 Query 2071906 CGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGC 2071965 ||| ||||||||||||||||||||| || ||| | | |||| || ||||||||| Sbjct 59781 CGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAACTCGAAGACATCGGCGTGC 59722 Query 2071966 CACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 || ||||| |||||| ||| ||||| || |||||| ||| || Sbjct 59721 CAGGGCTCAAGGTAGATGGCGAAGGCACCAGGACGCTTGTTGCCACC 59675 >seq41 Length=44290 Score = 159 bits (176), Expect = 5e-33 Identities = 183/246 (74%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 2019194 CCTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGC 2019253 |||||| | |||||||||||| | |||||||||| ||||||||| || | || || | Sbjct 36104 CCTGCCCCAGGGCCGCCACAAGCTCGTCATCCTCGACGAGGCCGACAGCATGACATCAGG 36163 Query 2019254 GGCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCT 2019313 ||||||||||||||||| ||| ||||||| ||| ||||||||||||| || || | Sbjct 36164 CGCCCAGCAGGCCCTCCGCCGGACAATGGAAATCTACTCCAACACGACGCGCTTCGCCTT 36223 Query 2019314 GGCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCG 2019373 || || ||| ||| | | ||||||| | || ||| || ||||||||| | || Sbjct 36224 CGCTTGTAACCAGTCCAACAAGATCATCGAGCCGCTGCAGTCACGATGCGCCATCCTCCG 36283 Query 2019374 CTTTGCGCGCCTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGA 2019433 || || || |||||||||| ||| ||| | |||||| | | || ||||| ||||| Sbjct 36284 CTACGCTCGACTCACCGACGAGCAGGTCGTCAAGCGTCTCCTGCAAATCATCGAAGCCGA 36343 Query 2019434 AAAGGT 2019439 |||||| Sbjct 36344 AAAGGT 36349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916052904673541