Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06-
15] 1,819 sequences; 35,034,269 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq1170 168 1e-35
seq41 159 5e-33
>seq1170
Length=97779
Score = 168 bits (186), Expect = 1e-35
Identities = 343/507 (68%), Gaps = 27/507 (5%)
Strand=Plus/Minus
Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599
||||||||| ||||| || |||| ||| ||||| || |||||||| | | |||||| ||
Sbjct 59674 CTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACGCCGTTAGA 59615
Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659
|||||||||||| || | ||||| ||| | ||| || | ||| ||| | |||
Sbjct 59614 GGTGCCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCACGGATACGGTGAGCGTTGAGGCC 59555
Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719
||||| || ||| ||||||||| | ||||| | || || || |||||||| |||||
Sbjct 59554 AATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCCTC 59495
Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGC---GCGCCGT 2073776
|| ||||| |||||||||| | || ||||| || || || ||| | | ||
Sbjct 59494 AATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGA---CAGCTGGCACTGAGGGGT 59438
Query 2073777 GCCGGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTA 2073836
||||||||||| || ||||| | || ||| | ||| ||||||| | |||
Sbjct 59437 ACCGGCATTGAAAAGTGTGGGGGAGGCGTGTGTGAAGAACTTGCTGGACATGAGGTTGTA 59378
Query 2073837 GGTGGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGC 2073896
||| ||| |||||| | | | | ||||| || || |||| ||
Sbjct 59377 GGTCTCGATGACGCGCTCAA---CAT------CGTCG------CCCCAGATACCGACTGC 59333
Query 2073897 GACGCGCATGATCATGTACTGGGGTCGCTCGACGA---CGGCGTCGCGCACCTTGGTCAG 2073953
||| ||||||||||||| ||| |||| |||| | | | ||||| | |||| |||
Sbjct 59332 GACACGCATGATCATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCG---AGCTTGAGCAG 59276
Query 2073954 GTAGGACCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCG 2074013
||| || | ||| ||| | ||| ||||| |||| | |||||| |||| |
Sbjct 59275 GTATGATCTCTCCAGAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGAC 59216
Query 2074014 GATGGCGGCGTCGAGGGCCTCCTTGTG 2074040
|||||| | ||| || ||||||||||
Sbjct 59215 GATGGCAGAGTCTAGCTCCTCCTTGTG 59189
Score = 100 bits (110), Expect = 5e-15
Identities = 263/407 (65%), Gaps = 8/407 (2%)
Strand=Plus/Minus
Query 2071610 TGGTGCCCAGGTTCTGCTGGTTGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGG 2071669
|||| || ||||||| |||||||| | |||| |||| ||||||| |||||| |||
Sbjct 60077 TGGTTCCGAGGTTCTTTTGGTTGCTCTTGCGGTTCGCGGCATCCTTGTAAAGCATGAAGG 60018
Query 2071670 GCGCACCCGTCTCGATCTGCGCCGTGACGATGGCCGACCAAATTTGGCGCGCGGGCACCG 2071729
| || ||||| |||| ||| || |||||| |||||| || |||| |
Sbjct 60017 GGTTGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTACCAAA----GCTTCTGGGCCTTG 59962
Query 2071730 AGGTCCTCGCGCG----GCCCTNNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCG 2071785
| | || ||| ||||| | | ||| ||||| | ||
Sbjct 59961 ATGGTCTTGCGACCCTTGCCCTCGCGCTCGTACTTTTCGTACAAGGCCTCAAACTCCTCG 59902
Query 2071786 CCGTGGCACTCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCA 2071845
|||| ||| || ||||||||| |||| ||||| | ||| | ||| ||| ||
Sbjct 59901 CCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGGCACATGAGGGTCCATTCGGCGTTC 59842
Query 2071846 GTCACCACGCGGCGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCC 2071905
|| | || | ||| ||||| ||| |||| ||| || || || || || ||
Sbjct 59841 TTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGGGCGAGGAAAAGGTCACGGGCA 59782
Query 2071906 CGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGC 2071965
||| ||||||||||||||||||||| || ||| | | |||| || |||||||||
Sbjct 59781 CGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAACTCGAAGACATCGGCGTGC 59722
Query 2071966 CACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012
|| ||||| |||||| ||| ||||| || |||||| ||| ||
Sbjct 59721 CAGGGCTCAAGGTAGATGGCGAAGGCACCAGGACGCTTGTTGCCACC 59675
>seq41
Length=44290
Score = 159 bits (176), Expect = 5e-33
Identities = 183/246 (74%), Gaps = 0/246 (0%)
Strand=Plus/Plus
Query 2019194 CCTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGC 2019253
|||||| | |||||||||||| | |||||||||| ||||||||| || | || || |
Sbjct 36104 CCTGCCCCAGGGCCGCCACAAGCTCGTCATCCTCGACGAGGCCGACAGCATGACATCAGG 36163
Query 2019254 GGCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCT 2019313
||||||||||||||||| ||| ||||||| ||| ||||||||||||| || || |
Sbjct 36164 CGCCCAGCAGGCCCTCCGCCGGACAATGGAAATCTACTCCAACACGACGCGCTTCGCCTT 36223
Query 2019314 GGCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCG 2019373
|| || ||| ||| | | ||||||| | || ||| || ||||||||| | ||
Sbjct 36224 CGCTTGTAACCAGTCCAACAAGATCATCGAGCCGCTGCAGTCACGATGCGCCATCCTCCG 36283
Query 2019374 CTTTGCGCGCCTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGA 2019433
|| || || |||||||||| ||| ||| | |||||| | | || ||||| |||||
Sbjct 36284 CTACGCTCGACTCACCGACGAGCAGGTCGTCAAGCGTCTCCTGCAAATCATCGAAGCCGA 36343
Query 2019434 AAAGGT 2019439
||||||
Sbjct 36344 AAAGGT 36349
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916052904673541
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |