Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06- 15] 1,819 sequences; 35,034,269 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq866 122 6e-23 seq766 105 4e-18 >seq866 Length=7889 Score = 122 bits (134), Expect = 6e-23 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| ||||||||||||||| ||||| || ||| |||| |||| Sbjct 2628 AGAACCAAGTGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCC 2569 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| || || ||||||| || |||||||| | || | ||||||||||| Sbjct 2568 TCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 2509 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | ||| | |||||| |||| ||| |||||| Sbjct 2508 TGAATCTTGGACTTGACGTTGTCGATGGTATCAGAAGACTCGACCTCAAGGGTGATGGTC 2449 Query 34946 TTTCCCGTGAGGGTCTTTAC 34965 || || ||||||||||| || Sbjct 2448 TTGCCGGTGAGGGTCTTGAC 2429 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || |||| |||| |||||||| ||||| ||||| ||| |||| |||| Sbjct 3084 AGGACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCT 3025 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| |||||||| |||||||| || || |||||||| | || | |||||||| || Sbjct 3024 TCCAACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTATCC 2965 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | |||| || | |||||| || | ||| || ||| Sbjct 2964 TGAATCTTAGACTTCACGTTGTCAATCGTGTCTGATGACTCGACCTCCAAGGTAATCGTC 2905 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | ||||| || ||||||||||| Sbjct 2904 TTGCCAGTCAACGTCTTCACGAAGATCTGCAT 2873 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || || | ||| ||||||||| ||||| |||||||| | |||| | || Sbjct 2856 AGGACAAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAACGTGCGACCGTCC 2797 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||||||||||||||||| || |||||||| | || | |||||||| || Sbjct 2796 TCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATACCCTCCTTATCT 2737 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | || | || || || | || || ||| Sbjct 2736 TGGATCTTCGACTTAACGTTGTCAATGGTGTCTGAAGATTCAACCTCGAGCGTGATTGTC 2677 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || || ||||| || ||||||||||| Sbjct 2676 TTGCCAGTAAGAGTCTTCACGAAGATCTGCAT 2645 >seq766 Length=50960 Score = 105 bits (116), Expect = 4e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| ||||| || ||| |||| | || || || ||||| || ||||||| Sbjct 295 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGA 236 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||| || |||||||| | || | ||||||||||| | || || ||||| Sbjct 235 TCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 176 Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 | |||| || || |||||| |||| ||| |||||||| ||||| |||||||| || | Sbjct 175 CGATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 116 Query 34968 A 34968 | Sbjct 115 A 115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325685579695961