Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06- 15] 1,819 sequences; 35,034,269 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq866 123 5e-23 >seq866 Length=7889 Score = 123 bits (136), Expect = 5e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | || || || ||||| ||||| || || || || || | | ||| Sbjct 3088 ACGGAGGACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACC 3029 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| | || |||||||| ||||| || | || || || ||||| || || ||||| Sbjct 3028 ATCTTCCAACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTT 2969 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||| |||||||| | || || || |||||||| || | || || ||||| || || Sbjct 2968 ATCCTGAATCTTAGACTTCACGTTGTCAATCGTGTCTGATGACTCGACCTCCAAGGTAAT 2909 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||| ||||||||||| || || |||||||| Sbjct 2908 CGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 2873 Score = 107 bits (118), Expect = 4e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||| || || | ||||| ||||| || ||||| || || || || | Sbjct 2873 TACCACCACGCAGACGGAGGACAAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCG 2814 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | |||||| || || || ||||| || ||||| | | || || || || | Sbjct 2813 ACAACGTGCGACCGTCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGGG 2754 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||||||||| ||||| | || || || ||||| || || || ||| | Sbjct 2753 GGATACCCTCCTTATCTTGGATCTTCGACTTAACGTTGTCAATGGTGTCTGAAGATTCAA 2694 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || |||||||| || | ||||| || || |||||||| Sbjct 2693 CCTCGAGCGTGATTGTCTTGCCAGTAAGAGTCTTCACGAAGATCTGCAT 2645 Score = 98.7 bits (108), Expect = 2e-15 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||| ||||| || || || || ||||| || || || || | Sbjct 2645 TACCACCGCGAAGACGGAGAACCAAGTGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGG 2586 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || || || ||||| || ||||||||||| | | || || || |||| Sbjct 2585 AGAGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGAG 2526 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || |||||||| | || || || || || |||||| || || | Sbjct 2525 GAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTATCAGAAGACTCGA 2466 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTAC 82798 | || | || || |||||||| || | ||||| || Sbjct 2465 CCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 2429 Score = 96.9 bits (106), Expect = 7e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| ||||| || ||||| || ||||| || || || || || || | | ||| Sbjct 2345 CGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCG 2286 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || ||||| ||||| || || || | || ||||| || || || || ||||| Sbjct 2285 TCCTCAAGCTGTTTGCCAGCGAAAATGAGACGCTGCTGATCGGGGGGAATGCCCTCCTTG 2226 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||||||||| | || || || || || ||||| | || || || | ||| || Sbjct 2225 TCTTGAATCTTGGACTTGACGTTGTCGATGGTATCGGATGACTCGACCTCGAGAGTGATG 2166 Query 82776 GTCTTGCCTGT 82786 |||||||| || Sbjct 2165 GTCTTGCCGGT 2155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981804317596641