Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06- 15] 1,819 sequences; 35,034,269 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1170 329 3e-85 seq766 114 1e-20 seq866 111 2e-19 >seq1170 Length=97779 Score = 329 bits (364), Expect = 3e-85 Identities = 1016/1549 (66%), Gaps = 61/1549 (4%) Strand=Plus/Minus Query 148260 TTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGT 148319 || || ||||| |||||||||||||| || || ||| | || | |||| || | || Sbjct 60726 TTGACAACCTGGAACTCGCCGGCGAGAACACGGCGCTGGTAGATGTTGGAGGTGTAGGGC 60667 Query 148320 TCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACC 148379 || || |||||||||||||||| ||||| | || | || || |||||| || || Sbjct 60666 TCGAAGCACTCGTTGTTGCCCAAGATCTGGGAAGTGGAGGCAGTAGGCATGGGAGCAACA 60607 Query 148380 AGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAG 148439 |||| |||||| | |||| | | || |||| |||||||| ||||||||||| Sbjct 60606 AGCAAACTGTTGCGAACACCGTGCTCCTTGATTTGCTCCTTCAGAGAGTCCCAGTCCCAG 60547 Query 148440 AGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTG 148499 || || || | || ||||||||||||||||| || || || || ||| | Sbjct 60546 AGGTCAGAGGGCTTGACATTCCACATGTCGTACTGAAGGATACCCTGGGAGATAGGGGAG 60487 Query 148500 CCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTT---CGCAGCTCGCCTCGAGC 148556 |||||||||| | ||| | || | | || ||||||| || | | | | || Sbjct 60486 CCCTCGTACGTGGAGTAGGTACCCTCCTCCCTGGCCAGTTGAACGGACATGGTC---AGA 60430 Query 148557 GCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGC-CGCC----GACTCGC 148611 ||| ||| ||| || ||||| ||| | | | ||||| | ||| ||| || | Sbjct 60429 GCGGCGTGGTAGATGGTCTCAAAAATCTTCTTATTGAG-ATCGCGAGCCTCAGGAGAC-- 60373 Query 148612 TTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAA 148671 ||| | ||||| || || | || || || ||||| ||||| || || | || | Sbjct 60372 --TCGAAAGGCATGCGGAGGGCGAGGAAGGCATCAGCAAGACCCTGGACACCAAGACCGA 60315 Query 148672 TGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGC-GGATAGTGGTTGCGGTCG 148730 |||| ||||| |||||| | ||| || ||| || | || ||||||||| || Sbjct 60314 TGGGGCGGTGACGCATGTTGCTGTTGCGAGC-CTCAGGAACGGGGTAGTGGTTGACATCA 60256 Query 148731 ATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAATCG 148790 |||||||||| || ||||| || || |||| || | | | ||| | |||||| Sbjct 60255 ATGATCTTGTTCAGGTTGCGAACAACGACCTGAGTGACCTCGTGAAGCTTCTGGAAATCG 60196 Query 148791 TA---------CTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCAC 148841 || |||| || |||| | | || || ||| | |||||| | ||||| Sbjct 60195 TAAACACCCTCATTGTAGTCAACGAAG-GTAGG--CAGGGCAAGAGAGGCCAAGTTGCAG 60139 Query 148842 ACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTG 148901 || || |||||| ||||||| |||||| | ||||| | ||| || ||| || | Sbjct 60138 ACAGCGACCTCATCGGGGGCGCAGTACTCAATAATCTCAGTGCAGAGGTTGGAGCTGCGG 60079 Query 148902 ATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTAC 148961 || || | ||||||||| |||||||||| ||| || |||||||| |||||| | Sbjct 60078 ATGGTTCCGAGGTTCTTTTGGTTGCTCTTGCGGTTCGCGGCATCCTTGTAAAGCATGAAG 60019 Query 148962 GGTCCGCCAGTTTCCACCTGCGTTTCCACTAT---GAACCGATGCAGGTCCTGCGCGCGC 149018 || ||| || || ||| | || | || | ||| | || | ||| || Sbjct 60018 GGGTTGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTACCAA---AGCTTCTGGGC---- 59966 Query 149019 ACTTGCTGCTCGTAGCGACCCT---CCT---GCTCGTA--TAAAGTATACAGCCGCTCGA 149070 |||| || || | |||||||| ||| ||||||| | ||| | || ||| | Sbjct 59965 -CTTGATGGTC-TTGCGACCCTTGCCCTCGCGCTCGTACTTTTCGTACAAGGC--CTCAA 59910 Query 149071 ACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACA 149130 || ||||||||||||| || | || |||||||||| || ||||||||||| | ||| Sbjct 59909 ACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGGCACATGAGGGTCCATT 59850 Query 149131 CGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGT 149190 || ||| | | || | |||||| ||||||||||| | |||||| ||| | |||| Sbjct 59849 CGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGGGCGAGGAAAAGGT 59790 Query 149191 CGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGA-GCACGCTGAATATG 149249 | || || | || || ||| ||| ||||| || | | || | ||| | Sbjct 59789 CACGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAACTC-GAAGACA 59731 Query 149250 TCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGC---TTGCCGCCCTGG 149306 || |||||||| ||||||| ||| | |||| || || ||| ||||| |||||| Sbjct 59730 TCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCACCAGGACGCTTGTTGCCACCCTGG 59671 Query 149307 TCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTG 149366 ||||||| ||| | ||||||| || || |||| ||| || | ||| | | ||| Sbjct 59670 TCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACGCCGTTAGAGGTG 59611 Query 149367 CCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATG 149426 ||||| || | |||| ||| || || | ||| |||||| ||| ||| Sbjct 59610 CCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCACGGATACGGTGAGCGTTGAGGCCAATG 59551 Query 149427 CCGCC-GCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGAT 149485 || || ||| | ||| ||||| |||||| ||| || |||||| ||||| || Sbjct 59550 CCACCAGCCAT-CTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCCTCAAT 59492 Query 149486 GCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGC 149545 | ||| ||||||| | || ||||| || ||| || | | || ||||| Sbjct 59491 GGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAGGGGTACCGGC 59432 Query 149546 CGCGAACATGGTGGGGCTGGCGTGTGT-AAAATATTTCTGGCTCATCATCTCGTACGACT 149604 ||| | |||||| ||||||||| || | || |||| ||| | | ||| | || Sbjct 59431 ATTGAAAAGTGTGGGGGAGGCGTGTGTGAAGAACTTGCTGG-ACATGAGGTTGTAGGTCT 59373 Query 149605 CGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCT 149664 ||| ||||| || | || ||||| ||| || | ||||| ||||| | ||| |||| Sbjct 59372 CGATGACGCGCTCAACATCGTCGCCCCAGATACCGACTGCGACACGCATGATCATGTGCT 59313 Query 149665 GCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGT 149724 |||||| ||| || | ||| | | ||||||| ||| | || || |||||| Sbjct 59312 GCGGTCTCTCGGCAATCTTGCCGTCGAGCTTGAGCAGGTATGATCTCTCCAGAGTCTTGA 59253 Query 149725 AGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTC 149773 |||| ||||| | ||||| ||||||||| ||| | | ||||| | ||| Sbjct 59252 AGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACGATGGCAGAGTC 59204 >seq766 Length=50960 Score = 114 bits (126), Expect = 1e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||||||||||||||| ||| | || | |||||||||||||| |||||||| ||||| Sbjct 261 GTCCTCGAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTT 202 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||||| | || | |||||||| || ||| || || | ||| | Sbjct 201 GTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGGAGGACTCGACCTCAAGGGTAAT 142 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAA 133652 ||| || || ||||| || || |||||| Sbjct 141 GGTCTTACCCGTCAGGGTCTTCACGAAA 114 >seq866 Length=7889 Score = 111 bits (122), Expect = 2e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||| ||||| || ||||| || || |||| ||| |||||| |||| Sbjct 2848 ATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAACGTGCGACC-GTCCTCAAGCT 2790 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || ||| | || | |||||||||||||| ||||| || ||||| || ||||| Sbjct 2789 GCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATACCCTCCTTATCTTGGATCT 2730 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | |||| ||||| | | || || |||| |||| || ||||| | Sbjct 2729 TCGACTTAACGTTGTCAATGGTGTCTGAAGATTCAACCTCGAGCGTGATTGTCTTGCCAG 2670 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | ||||| || ||||| |||||||| Sbjct 2669 TAAGAGTCTTCACGAAGATCTGCAT 2645 Score = 111 bits (122), Expect = 2e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | |||||| || ||||| || ||||| |||| || ||| ||| | || || | || Sbjct 3076 ATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCA-TCTTCCAACT 3018 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || ||| | || || |||||||||||||||||||| || ||||| || |||| Sbjct 3017 GCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTATCCTGAATCT 2958 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | |||| |||||| | | ||| || || | ||| | || ||||| | Sbjct 2957 TAGACTTCACGTTGTCAATCGTGTCTGATGACTCGACCTCCAAGGTAATCGTCTTGCCAG 2898 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || ||||| |||||||| Sbjct 2897 TCAACGTCTTCACGAAGATCTGCAT 2873 Score = 89.7 bits (98), Expect = 5e-13 Identities = 134/188 (71%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| ||| | ||| | | | ||||| || |||||||| Sbjct 2613 GTGGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCA-TCCTCAAGTTGCTTGCC 2555 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | ||||||||||| ||||| ||||| |||||||| ||||| ||| Sbjct 2554 AGCAAAGATCAAACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTT 2495 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | || || | | ||| || || | ||||| ||| |||||||| || || Sbjct 2494 GACGTTGTCGATGGTATCAGAAGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGGGT 2435 Query 133643 TTTTACGA 133650 || |||| Sbjct 2434 CTTGACGA 2427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483409808219560