Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06- 15] 1,819 sequences; 35,034,269 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq866 87.8 1e-12 >seq866 Length=7889 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | || | ||| || || ||| || || |||||||| || || Sbjct 2872 ACCACCACGCAGACGGAGGACAAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGA 2813 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||| |||| || | || |||||||| || ||||| |||||||| || | || Sbjct 2812 CAACGTGCGACCGTCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGG 2753 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | ||| || || || || ||| || ||| | |||| |||||| ||||| | Sbjct 2752 GATACCCTCCTTATCTTGGATCTTCGACTT-AACGTTGTCAATGGTGTCTGAAGATTCAA 2694 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | |||||| || || || || | || || || |||||||||||| Sbjct 2693 CCTCGAGCGTGATTGTCTTGCCAGTAAGAGTCTTCACGAAGATCTGCATA 2644 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || || ||| ||| || || |||||||| ||||| Sbjct 2644 ACCACCGCGAAGACGGAGAACCAAGTGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGA 2585 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| ||||| | || || | ||| || || ||||| |||||||||||||| || | || Sbjct 2584 GAGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGAGG 2525 Query 33642 CACACCTTCTTTGTC 33656 | || || ||||| Sbjct 2524 AATGCCCTCCTTGTC 2510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328696712940480