Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06- 15] 1,819 sequences; 35,034,269 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1170 181 1e-40 >seq1170 Length=97779 Score = 181 bits (200), Expect = 1e-40 Identities = 984/1545 (64%), Gaps = 41/1545 (3%) Strand=Plus/Minus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 ||||| || || |||||||| || || ||||| | | || | ||| ||| | ||| Sbjct 60726 TTGACAACCTGGAACTCGCCGGCGAGAACACGGCGCTGGTAGATGTTGGAGGTGTAGGGC 60667 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 || || |||| || ||||| || || |||| |||| || ||||||||| || || Sbjct 60666 TCGAAGCACTCGTTGTTGCCCAAGATCTGGGAAGTGGAGGCAGTAGGCATGGGAGCAACA 60607 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072 | ||| || || | ||||| | | ||| | ||||||| || | ||||||||| Sbjct 60606 AGCAAACTGTTGCGAACACCGTGCTCCTTGATTTGCTCCTTCAGAGAGTCCCAGTCCCAG 60547 Query 147073 ATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTG 147132 | |||||| | || ||||||||||||||||| || | || | | || | Sbjct 60546 AGGTCAGAGGGCTTGACATTCCACATGTCGTACTGAAGGATACCCTGGGAGATAGGGGAG 60487 Query 147133 CCAGCGAACGTAGTGTAGCTTCCGT-CGCGCTGCGCCAATTCACAG--CTTGCCTCGAGC 147189 || || |||| | |||| | || | | | ||| |||| || | | | || || || Sbjct 60486 CCCTCGTACGTGGAGTAGGTACCCTCCTCCCTG-GCCAGTTGAACGGACATG-GTC-AGA 60430 Query 147190 GCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCG 147249 || | | ||| ||||| || || | || || || || || || |||| Sbjct 60429 GCGGCGTGGTAGATGGTCTCAAAAATCTTCTTATTGAGATCGCGAGCCTCAGGAGACTCG 60370 Query 147250 TAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGT 147309 ||||||| || || | |||||||| || | |||||||| ||| | ||||| || Sbjct 60369 AAAGGCATGCGGAGGGCGAGGAAGGCATCAGCAAGACCCTGGACACCAAGACCGATGGGG 60310 Query 147310 CGATGCTTTTCGTTGCTGCGCTTCGCG-CTC-GCTATGGGATAGTGGTTGCGATCAATAA 147367 || || |||||| | | || | ||| | | ||| ||||||||| |||||| | Sbjct 60309 CGGTGACGCATGTTGCT--GTTGCGAGCCTCAGGAACGGGGTAGTGGTTGACATCAATGA 60252 Query 147368 TCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAG 147427 ||||||| ||||| || || || || | ||| | | || |||| |||||| ||| Sbjct 60251 TCTTGTTCAGGTTGCGAACAACGACCTGAGTGACCTCGTGAAGCTTCTGGAAATCGTAAA 60192 Query 147428 TCCCGTCTTCGACACGTACGCATTGGT--TCACGGCGATAGACGCCAGATTGCAGACGGC 147485 || || | | ||| | ||| || ||| | ||| |||| |||||||| || Sbjct 60191 CACCCTCATTGTAGTCAACGAA--GGTAGGCAGGGCAAGAGAGGCCAAGTTGCAGACAGC 60134 Query 147486 CGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGAC 147545 ||| |||| | ||| ||||| | || || | ||| |||||| || ||| Sbjct 60133 GACCTCATCGGGGGCGCAGTACTCAATAATCTCAGTGCAGAGGTTGGAGCTGCGGATGGT 60074 Query 147546 TCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCC 147605 ||| | || | || ||||| || || || || || ||| | |||||| | || Sbjct 60073 TCCGAGGTTCTTTTGGTTGCTCTTGCGGTTCGCGGCATCCTTGTAAAGCATGAAGGGGTT 60014 Query 147606 GCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTATGCAGGTCCTGCGCTCGCACCCG 147662 ||||||||| || | || | ||| ||| | || | ||| || | Sbjct 60013 GCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTACCAA---AGCTTCTGGGCCTTGATGGT 59957 Query 147663 CTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTA 147722 || ||| ||||||| |||||| |||||||| ||||||||| |||||||| Sbjct 59956 CTTGCGACCCTTGCCCTCGCGCTCGTACTTTTCGTACAAGGCCTCAAACTCCTCGCCGTA 59897 Query 147723 GCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTT 147782 ||| || || |||||||| |||| | || ||||| || | ||| | ||| | | Sbjct 59896 GCAGTCAGCCAGGCCGGGGCACTCGTTGGGGCACATGAGGGTCCATTCGGCGTTCTTCTC 59837 Query 147783 AACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTGCA 147842 || | ||| |||||||| || | ||| || ||| | ||| || || || | Sbjct 59836 GACTCTCTTCATGAACAGATCGGGGATCCAGAGGGCGAGGAAAAGGTCACGGGCACGGAC 59777 Query 147843 ATCCTC---GGCGCCCATGTTGCGTTTCAAAT-TAAGCACGCTATAGATGTCGGCGTGCC 147898 ||||| | || | ||||| ||| | | | || | | ||| |||||||||| Sbjct 59776 CTCCTCCTTGCCGTGGTTCTTGCG---CAAGTCCATGAACTCGA-AGACATCGGCGTGCC 59721 Query 147899 AGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGACATGGC 147955 |||| |||| ||||| ||| | ||||| |||| || || ||||||||||| | || Sbjct 59720 AGGGCTCAAGGTAGATGGCGAAGGCACCAGGACGCTTGTTGCCACCCTGGTCGACGTAGC 59661 Query 147956 GCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGG 148015 | | ||||||| || || || | |||||| | |||| | | |||||||||||| Sbjct 59660 GAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACGCCGTTAGAGGTGCCGTTGGTGC 59601 Query 148016 AATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCC-GCCG 148074 || | | ||| ||| || | ||| |||| | ||||||||| || ||| Sbjct 59600 CGGCAATGTAGGAGCCAGTGGCACGGATACGGTGAGCGTTGAGGCCAATGCCACCAGCCA 59541 Query 148075 TACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGCTGTCGTTT 148134 | ||| || || ||||| | || |||||| || || ||| ||| | Sbjct 59540 T-CTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCCTCAATGGAGTCTTCC 59482 Query 148135 TTGACGCCAAGCAAAAAACACGAACACATTTGCGGAAT-CCGCGTTCCCGCCGAGAAAAG 148193 || | | | | | || || ||| ||| || | | | | || || || |||||| Sbjct 59481 TTCATGTCGACGAGGAAGCATGAAGACAGCTG-GCACTGAGGGGTACCGGCATTGAAAAG 59423 Query 148194 GGTGGGACTCGCGTGCGTAAACAATTT--TTGACTCATCATGCGATACGTCTCAATAGCG 148251 ||||| ||||| || || || || | || ||| | | || ||||| || || Sbjct 59422 TGTGGGGGAGGCGTGTGTGAAGAACTTGCTGGA--CATGAGGTTGTAGGTCTCGATGACG 59365 Query 148252 TCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGT 148311 || | |||||||| || || | ||||| ||||||| ||||||||| |||| Sbjct 59364 CGCTCAACATCGTCGCCCCAGATACCGACTGCGACACGCATGATCATGTGCTGCGGTCTC 59305 Query 148312 TCGGCAA-CTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAAA 148370 ||||||| |||| || || |||||| || ||| | || || || ||| | || || Sbjct 59304 TCGGCAATCTTG-CCGTCGAGCTTGAGCAGGTATGATCTCTCCAGAGTCTTGAAGCCGAA 59246 Query 148371 GTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCGCATCTAG 148415 ||| | ||| | || || | ||||| ||||||| | ||||| Sbjct 59245 GTATTGGTAGTTGAAGTCGCGGTCGTAGACGATGGCAGAGTCTAG 59201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476600363052840