Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06- 15] 1,819 sequences; 35,034,269 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1170 165 1e-34 seq41 134 2e-25 >seq1170 Length=97779 Score = 165 bits (182), Expect = 1e-34 Identities = 342/505 (68%), Gaps = 23/505 (5%) Strand=Plus/Plus Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741 |||||||||| || ||| |||||||| | ||| ||| ||||| |||| ||||| Sbjct 59189 CACAAGGAGGAGCTAGACTCTGCCATCGTCTACGACCGCGACTTCAACTACCAATACTTC 59248 Query 259742 GGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATTGTCGTCGAGCGG 259801 || | ||| || | || |||||| ||| | || | | | |||| | Sbjct 59249 GGCTTCAAGACTCTGGAGAGATCATACCTGCTCAAGCTCGACGGCAAGATTGCCGAGAGA 59308 Query 259802 CCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACAAT 259861 || ||| | ||| ||||||||||||| | || | |||| |||| || Sbjct 59309 CCGCAGCACATGATCATGCGTGTCGCAGTCGGTA--TCTGGGG----------CGACGAT 59356 Query 259862 GCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCTCAGC 259920 | | |||| ||| ||| |||||| | |||||| ||||| ||| ||||| || Sbjct 59357 G---TTGAGCGCGTCATCGAGACCTACAACCTCATGTC-CAGCAAGTTCTTCACACACGC 59412 Query 259921 GACGCCCACGCTCTTTAATGCCGGCACGCCGC---GCCCGCAGAATTCGTCGTGCTTTCT 259977 | ||||| || || |||||||| || || | ||| || | || || ||||| || Sbjct 59413 CTCCCCCACACTTTTCAATGCCGGTACCCCTCAGTGCCAGCTG---TCTTCATGCTTCCT 59469 Query 259978 GTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCT 260037 | |||||||||| || || || ||||| ||||| ||||| |||||| ||||| | Sbjct 59470 CGTCGACATGAAGGAAGACTCCATTGAGGGTATCTACGACACCCTCAAGACCTGCGCCAT 59529 Query 260038 CATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGC 260097 ||||||||| ||| || ||||| || | ||| ||| | || ||| | ||| | Sbjct 59530 GATCTCCAAGATGGCTGGTGGCATTGGCCTCAACGCTCACCGTATCCGTGCCACTGGCTC 59589 Query 260098 CTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAA 260157 |||| | || |||||||||||| || |||||| | | ||||||||||| || || || Sbjct 59590 CTACATTGCCGGCACCAACGGCACCTCTAACGGCGTCATTCCCATGCTTCGTGTCTTCAA 59649 Query 260158 CGACACGGCGCGCTACGTCGACCAG 260182 | |||| || ||||||||||||||| Sbjct 59650 CAACACTGCTCGCTACGTCGACCAG 59674 Score = 98.7 bits (108), Expect = 1e-14 Identities = 351/544 (65%), Gaps = 20/544 (4%) Strand=Plus/Plus Query 262875 CCGCTGGGACTGGGACGCACTGCGGGCGTCGGTTCGA-CAGCATGGCCTGCGCAACTCGT 262933 || ||||||||||||| | ||| || | | || | |||| || | |||||| | Sbjct 60544 CCTCTGGGACTGGGACTCTCTGAAGGAG-CAAATCAAGGAGCACGGTGTTCGCAACAGTT 60602 Query 262934 TGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGT 262993 |||| || || | |||||| || ||| | || || |||||| ||||||||| |||| | Sbjct 60603 TGCTTGTTGCTCCCATGCCTACTGCCTCCACTTCCCAGATCTTGGGCAACAACGAGTGCT 60662 Query 262994 TCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGG 263053 ||||| | ||| |||||||||| |||||| || ||| | ||||| || || | Sbjct 60663 TCGAGCCCTACACCTCCAACATCTACCAGCGCCGTGTTCTCGCCGGCGAGTTCCAGGTTG 60722 Query 263054 TCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGGACGCCCGACTTTCGCG 263113 |||||| | ||| | ||| | || | ||| ||||| | | | | Sbjct 60723 TCAACCCCTGGCTGCTGAAGGATCTTGTCGACATGGGCTTGTGGTCCGATGCCATGAAGA 60782 Query 263114 ACCGGCTCATTGCGGCACAGGGCTCGGTGCAGGGCTTTGACGACGAGGAGGTGCCGCCCG 263173 |||| |||| || | | || || || ||| || | | | || ||| Sbjct 60783 ACCGTATCATCGCCGAGAACGGTTCCGTTCAG------AACATCCCTAACATCCCCGCCG 60836 Query 263174 ATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATTG---ATA 263230 | |||||||||| | ||||||||| ||||| | || | || ||| ||| | | Sbjct 60837 AGGTCAAGGCTCTGTACAAGACCGTCTGGGAAATCTCCCAGCG---CACCGTTGTTCAGA 60893 Query 263231 TGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCG 263290 |||| ||||| || | ||| | |||||| |||||| |||||| | || | | Sbjct 60894 TGGCTGCCGATCGTGGTGCCTTCATTGACCAGTCCCAGTCCCTCAACATCCACATGAAGG 60953 Query 263291 ACCCGAC---GGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCA 263347 ||||||| || | || ||||| |||||| | || ||| | || |||| Sbjct 60954 ACCCGACAATGGGCAAG---ATCACCAGCATGCACTTCGCTGGCTGGAAGCTTGGTCTCA 61010 Query 263348 AGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCG 263407 |||| ||||||||||| ||||| || | | | ||| | ||||||| |||||||||| Sbjct 61011 AGACGGGCATGTACTACCTGCGTACTCAGGCAGCTTCTGCTCCCATTCAGTTCACCGTCG 61070 Query 263408 ATCA 263411 | || Sbjct 61071 ACCA 61074 >seq41 Length=44290 Score = 134 bits (148), Expect = 2e-25 Identities = 208/296 (70%), Gaps = 6/296 (2%) Strand=Plus/Minus Query 332810 ACCTTTTCGGCGGCGACAATCTCGCGCAGGCGACC---GGCGATTTGGGCGTCAGTGAGG 332866 ||||||||||| ||| || | ||||| ||| | ||| || |||| ||||| Sbjct 36349 ACCTTTTCGGCTTCGATGATTT---GCAGGAGACGCTTGACGACCTGCTCGTCGGTGAGT 36293 Query 332867 CGCACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTG 332926 || | |||| |||||||| || || |||||| | |||||||| | | ||| | Sbjct 36292 CGAGCGTAGCGGAGGATGGCGCATCGTGACTGCAGCGGCTCGATGATCTTGTTGGACTGG 36233 Query 332927 TTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCC 332986 || || || | ||| || |||||||| |||| | ||||||| ||| ||||||||| Sbjct 36232 TTACAAGCGAAGGCGAAGCGCGTCGTGTTGGAGTAGATTTCCATTGTCCGGCGGAGGGCC 36173 Query 332987 TGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCG 333046 || ||||| | | || | || |||||||||||||||||||| || ||||||||| || Sbjct 36172 TGCTGGGCGCCTGATGTCATGCTGTCGGCCTCGTCGAGGATGACGAGCTTGTGGCGGCCC 36113 Query 333047 TGCGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTC 333102 || ||||| ||| | ||| |||| | ||||| ||||| |||||||| Sbjct 36112 TGGGGCAGGGTGACCTTCTTCTGGGCGAAGCCCTTGATACGGTTGCGAACGACGTC 36057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177635754106678