Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06-
15] 1,819 sequences; 35,034,269 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq1170 165 1e-34
seq41 134 2e-25
>seq1170
Length=97779
Score = 165 bits (182), Expect = 1e-34
Identities = 342/505 (68%), Gaps = 23/505 (5%)
Strand=Plus/Plus
Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741
|||||||||| || ||| |||||||| | ||| ||| ||||| |||| |||||
Sbjct 59189 CACAAGGAGGAGCTAGACTCTGCCATCGTCTACGACCGCGACTTCAACTACCAATACTTC 59248
Query 259742 GGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATTGTCGTCGAGCGG 259801
|| | ||| || | || |||||| ||| | || | | | |||| |
Sbjct 59249 GGCTTCAAGACTCTGGAGAGATCATACCTGCTCAAGCTCGACGGCAAGATTGCCGAGAGA 59308
Query 259802 CCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACAAT 259861
|| ||| | ||| ||||||||||||| | || | |||| |||| ||
Sbjct 59309 CCGCAGCACATGATCATGCGTGTCGCAGTCGGTA--TCTGGGG----------CGACGAT 59356
Query 259862 GCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCTCAGC 259920
| | |||| ||| ||| |||||| | |||||| ||||| ||| ||||| ||
Sbjct 59357 G---TTGAGCGCGTCATCGAGACCTACAACCTCATGTC-CAGCAAGTTCTTCACACACGC 59412
Query 259921 GACGCCCACGCTCTTTAATGCCGGCACGCCGC---GCCCGCAGAATTCGTCGTGCTTTCT 259977
| ||||| || || |||||||| || || | ||| || | || || ||||| ||
Sbjct 59413 CTCCCCCACACTTTTCAATGCCGGTACCCCTCAGTGCCAGCTG---TCTTCATGCTTCCT 59469
Query 259978 GTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCT 260037
| |||||||||| || || || ||||| ||||| ||||| |||||| ||||| |
Sbjct 59470 CGTCGACATGAAGGAAGACTCCATTGAGGGTATCTACGACACCCTCAAGACCTGCGCCAT 59529
Query 260038 CATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGC 260097
||||||||| ||| || ||||| || | ||| ||| | || ||| | ||| |
Sbjct 59530 GATCTCCAAGATGGCTGGTGGCATTGGCCTCAACGCTCACCGTATCCGTGCCACTGGCTC 59589
Query 260098 CTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAA 260157
|||| | || |||||||||||| || |||||| | | ||||||||||| || || ||
Sbjct 59590 CTACATTGCCGGCACCAACGGCACCTCTAACGGCGTCATTCCCATGCTTCGTGTCTTCAA 59649
Query 260158 CGACACGGCGCGCTACGTCGACCAG 260182
| |||| || |||||||||||||||
Sbjct 59650 CAACACTGCTCGCTACGTCGACCAG 59674
Score = 98.7 bits (108), Expect = 1e-14
Identities = 351/544 (65%), Gaps = 20/544 (4%)
Strand=Plus/Plus
Query 262875 CCGCTGGGACTGGGACGCACTGCGGGCGTCGGTTCGA-CAGCATGGCCTGCGCAACTCGT 262933
|| ||||||||||||| | ||| || | | || | |||| || | |||||| |
Sbjct 60544 CCTCTGGGACTGGGACTCTCTGAAGGAG-CAAATCAAGGAGCACGGTGTTCGCAACAGTT 60602
Query 262934 TGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGT 262993
|||| || || | |||||| || ||| | || || |||||| ||||||||| |||| |
Sbjct 60603 TGCTTGTTGCTCCCATGCCTACTGCCTCCACTTCCCAGATCTTGGGCAACAACGAGTGCT 60662
Query 262994 TCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGG 263053
||||| | ||| |||||||||| |||||| || ||| | ||||| || || |
Sbjct 60663 TCGAGCCCTACACCTCCAACATCTACCAGCGCCGTGTTCTCGCCGGCGAGTTCCAGGTTG 60722
Query 263054 TCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGGACGCCCGACTTTCGCG 263113
|||||| | ||| | ||| | || | ||| ||||| | | | |
Sbjct 60723 TCAACCCCTGGCTGCTGAAGGATCTTGTCGACATGGGCTTGTGGTCCGATGCCATGAAGA 60782
Query 263114 ACCGGCTCATTGCGGCACAGGGCTCGGTGCAGGGCTTTGACGACGAGGAGGTGCCGCCCG 263173
|||| |||| || | | || || || ||| || | | | || |||
Sbjct 60783 ACCGTATCATCGCCGAGAACGGTTCCGTTCAG------AACATCCCTAACATCCCCGCCG 60836
Query 263174 ATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATTG---ATA 263230
| |||||||||| | ||||||||| ||||| | || | || ||| ||| | |
Sbjct 60837 AGGTCAAGGCTCTGTACAAGACCGTCTGGGAAATCTCCCAGCG---CACCGTTGTTCAGA 60893
Query 263231 TGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCG 263290
|||| ||||| || | ||| | |||||| |||||| |||||| | || | |
Sbjct 60894 TGGCTGCCGATCGTGGTGCCTTCATTGACCAGTCCCAGTCCCTCAACATCCACATGAAGG 60953
Query 263291 ACCCGAC---GGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCA 263347
||||||| || | || ||||| |||||| | || ||| | || ||||
Sbjct 60954 ACCCGACAATGGGCAAG---ATCACCAGCATGCACTTCGCTGGCTGGAAGCTTGGTCTCA 61010
Query 263348 AGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCG 263407
|||| ||||||||||| ||||| || | | | ||| | ||||||| ||||||||||
Sbjct 61011 AGACGGGCATGTACTACCTGCGTACTCAGGCAGCTTCTGCTCCCATTCAGTTCACCGTCG 61070
Query 263408 ATCA 263411
| ||
Sbjct 61071 ACCA 61074
>seq41
Length=44290
Score = 134 bits (148), Expect = 2e-25
Identities = 208/296 (70%), Gaps = 6/296 (2%)
Strand=Plus/Minus
Query 332810 ACCTTTTCGGCGGCGACAATCTCGCGCAGGCGACC---GGCGATTTGGGCGTCAGTGAGG 332866
||||||||||| ||| || | ||||| ||| | ||| || |||| |||||
Sbjct 36349 ACCTTTTCGGCTTCGATGATTT---GCAGGAGACGCTTGACGACCTGCTCGTCGGTGAGT 36293
Query 332867 CGCACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTG 332926
|| | |||| |||||||| || || |||||| | |||||||| | | ||| |
Sbjct 36292 CGAGCGTAGCGGAGGATGGCGCATCGTGACTGCAGCGGCTCGATGATCTTGTTGGACTGG 36233
Query 332927 TTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCC 332986
|| || || | ||| || |||||||| |||| | ||||||| ||| |||||||||
Sbjct 36232 TTACAAGCGAAGGCGAAGCGCGTCGTGTTGGAGTAGATTTCCATTGTCCGGCGGAGGGCC 36173
Query 332987 TGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCG 333046
|| ||||| | | || | || |||||||||||||||||||| || ||||||||| ||
Sbjct 36172 TGCTGGGCGCCTGATGTCATGCTGTCGGCCTCGTCGAGGATGACGAGCTTGTGGCGGCCC 36113
Query 333047 TGCGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTC 333102
|| ||||| ||| | ||| |||| | ||||| ||||| ||||||||
Sbjct 36112 TGGGGCAGGGTGACCTTCTTCTGGGCGAAGCCCTTGATACGGTTGCGAACGACGTC 36057
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177635754106678
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |