Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06- 15] 1,819 sequences; 35,034,269 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq766 105 6e-18 seq866 102 7e-17 >seq766 Length=50960 Score = 105 bits (116), Expect = 6e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| || |||||||| |||| | ||| || |||| || |||||||| || || || | Sbjct 295 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGA 236 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 |||| ||||||||||| | || | || |||||||||| |||||| ||| | | | Sbjct 235 TCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 176 Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726 | | ||||||| || || ||||| | || || || |||||||||| || ||||| | Sbjct 175 CGATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 116 Query 35727 A 35727 | Sbjct 115 A 115 >seq866 Length=7889 Score = 102 bits (112), Expect = 7e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | ||| || || |||| || |||||||| || || || Sbjct 2836 CTCCTTCTGGATGTTGTAGTCCGACAACGTGCGACCGTCCTCAAGCTGCTTTCCGGCGAA 2777 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||| | || | | |||||| || |||||| ||| | || Sbjct 2776 GATCAAGCGCTGCTGGTCGGGGGGGATACCCTCCTTATCTTGGATCTTCGACTT-AACGT 2718 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | ||||| ||||| ||||| | |||||| || || || || | ||| |||| Sbjct 2717 TGTCAATGGTGTCTGAAGATTCAACCTCGAGCGTGATTGTCTTGCCAGTAAGAGTCTTCA 2658 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 2657 CGAAGATCTGCAT 2645 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| ||| || ||| || | || |||| |||||| || || || Sbjct 3063 TCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCCAACTGCTTTCCAGCGAAG 3004 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | ||||||||||| | ||| | | |||||| ||| ||||| ||||| ||| Sbjct 3003 ATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTATCCTGAATCTTAGACTTCA-CGTT 2945 Query 35666 G-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | |||||| || || ||||||| || ||||| || || ||||| || ||||| Sbjct 2944 GTCAATCGTGTCTGATGACTCGACCTCCAAGGTAATCGTCTTGCCAGTCAACGTCTTCAC 2885 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 2884 GAAGATCTGCAT 2873 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 ||||| || | ||| |||||| ||||||||||| |||| | ||| || | || || Sbjct 2625 ACCAAGTGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCA 2566 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 || ||||| || ||||| ||||| ||||||||||| | ||||| || |||||||||| Sbjct 2565 AGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGA 2506 Query 35648 ATCTT 35652 ||||| Sbjct 2505 ATCTT 2501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450783350080520