Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06-
15] 1,819 sequences; 35,034,269 total letters
Query= NC_027925.1
Length=496396
Score E
Sequences producing significant alignments: (Bits) Value
seq1170 98.7 3e-15
>seq1170
Length=97779
Score = 98.7 bits (108), Expect = 3e-15
Identities = 362/548 (66%), Gaps = 28/548 (5%)
Strand=Plus/Plus
Query 254971 CGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGG 255030
|||| | || || ||| | ||||| ||||||||| |||||||||||||| || || ||
Sbjct 59620 CGGCGTCATTCCCATGCTTCGTGTCTTCAACAACACTGCTCGCTACGTCGACCAGGGTGG 59679
Query 255031 CGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGA---CATTGA 255087
| ||| || || || || ||| |||||||||| ||||| ||||||||||| | | ||
Sbjct 59680 CAACAAGCGTCCTGGTGCCTTCGCCATCTACCTTGAGCCCTGGCACGCCGATGTCTTCGA 59739
Query 255088 ACGGTT--TTTACTGCTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATC 255145
||| | ||| || | | || ||||| |||||| | ||||| ||| |
Sbjct 59740 ---GTTCATGGACT--TGCGCAAGAACCACGGCAAGGAGGAGGTCCGTGCCCGTGACCTT 59794
Query 255146 TACACCGCTGTCTGGTGCTGCGATCTGTTTATGCGACGCGTGGA-ACGAGACGAGACCTG 255204
| | ||| ||||| | ||||||||| ||| | || || | || ||| ||
Sbjct 59795 TTCCTCGCCCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAGAAGA-ACGCCGAATG 59853
Query 255205 GAGCCTCATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGA 255264
|| ||||||||| |||||| | ||||| || | |||| | || || ||||||||
Sbjct 59854 GACCCTCATGTGCCCCAACGAGTGCCCCGGCCTGGCTGACTGCTACGGCGAGGAGTTTGA 59913
Query 255265 AAAACTGTATCTGGAGTACGAGCGTGCCGGC-CGGTTCGTACG-CCA--AGTGCCCGCGA 255320
|||| |||||||||| | ||| || ||| | | ||| | ||||
Sbjct 59914 GGCCTTGTACGAAAAGTACGAGCGCGAGGGCAAGGGTCGCAAGACCATCAAGGCCC---- 59969
Query 255321 AGAAGATCTGGAACACGATGGT-GCGCATGCAGCTGGAAACCGGAATGCCGTTCCTATTG 255379
||||| | ||| || | || | | | | ||| || ||||| | || ||| | |
Sbjct 59970 AGAAGCTTTGGTACGCCATCCTCGAGGCT-CAGACTGAGACCGGCAACCCCTTCATGCTT 60028
Query 255380 CACAAAGA--CCACATAAACGCACGGTCGAACCAACGCCACCGCGGTACGATACGCGGCT 255437
|||| || || | || |||| | | |||||| ||| ||| || || ||| |||
Sbjct 60029 TACAAGGATGCCGC-GAACCGCAAGAGC-AACCAAAAGAACCTCGGAACCATCCGCAGCT 60086
Query 255438 CGAACCTGTGCACCGAGATTACGTTGCAC-ACGTCAGCGCAAGAGGTGGCCGTTTGCAAC 255496
| ||||| ||||| ||||||| | || || | || | ||||| || || ||||||
Sbjct 60087 CCAACCTCTGCACTGAGATTATTGAGTACTGCGCCCCCG-ATGAGGTCGCTGTCTGCAAC 60145
Query 255497 TTGGCGTC 255504
||||| ||
Sbjct 60146 TTGGCCTC 60153
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1588298982340455
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |