Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06- 15] 1,819 sequences; 35,034,269 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq1170 98.7 3e-15 >seq1170 Length=97779 Score = 98.7 bits (108), Expect = 3e-15 Identities = 362/548 (66%), Gaps = 28/548 (5%) Strand=Plus/Plus Query 254971 CGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGG 255030 |||| | || || ||| | ||||| ||||||||| |||||||||||||| || || || Sbjct 59620 CGGCGTCATTCCCATGCTTCGTGTCTTCAACAACACTGCTCGCTACGTCGACCAGGGTGG 59679 Query 255031 CGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGA---CATTGA 255087 | ||| || || || || ||| |||||||||| ||||| ||||||||||| | | || Sbjct 59680 CAACAAGCGTCCTGGTGCCTTCGCCATCTACCTTGAGCCCTGGCACGCCGATGTCTTCGA 59739 Query 255088 ACGGTT--TTTACTGCTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATC 255145 ||| | ||| || | | || ||||| |||||| | ||||| ||| | Sbjct 59740 ---GTTCATGGACT--TGCGCAAGAACCACGGCAAGGAGGAGGTCCGTGCCCGTGACCTT 59794 Query 255146 TACACCGCTGTCTGGTGCTGCGATCTGTTTATGCGACGCGTGGA-ACGAGACGAGACCTG 255204 | | ||| ||||| | ||||||||| ||| | || || | || ||| || Sbjct 59795 TTCCTCGCCCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAGAAGA-ACGCCGAATG 59853 Query 255205 GAGCCTCATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGA 255264 || ||||||||| |||||| | ||||| || | |||| | || || |||||||| Sbjct 59854 GACCCTCATGTGCCCCAACGAGTGCCCCGGCCTGGCTGACTGCTACGGCGAGGAGTTTGA 59913 Query 255265 AAAACTGTATCTGGAGTACGAGCGTGCCGGC-CGGTTCGTACG-CCA--AGTGCCCGCGA 255320 |||| |||||||||| | ||| || ||| | | ||| | |||| Sbjct 59914 GGCCTTGTACGAAAAGTACGAGCGCGAGGGCAAGGGTCGCAAGACCATCAAGGCCC---- 59969 Query 255321 AGAAGATCTGGAACACGATGGT-GCGCATGCAGCTGGAAACCGGAATGCCGTTCCTATTG 255379 ||||| | ||| || | || | | | | ||| || ||||| | || ||| | | Sbjct 59970 AGAAGCTTTGGTACGCCATCCTCGAGGCT-CAGACTGAGACCGGCAACCCCTTCATGCTT 60028 Query 255380 CACAAAGA--CCACATAAACGCACGGTCGAACCAACGCCACCGCGGTACGATACGCGGCT 255437 |||| || || | || |||| | | |||||| ||| ||| || || ||| ||| Sbjct 60029 TACAAGGATGCCGC-GAACCGCAAGAGC-AACCAAAAGAACCTCGGAACCATCCGCAGCT 60086 Query 255438 CGAACCTGTGCACCGAGATTACGTTGCAC-ACGTCAGCGCAAGAGGTGGCCGTTTGCAAC 255496 | ||||| ||||| ||||||| | || || | || | ||||| || || |||||| Sbjct 60087 CCAACCTCTGCACTGAGATTATTGAGTACTGCGCCCCCG-ATGAGGTCGCTGTCTGCAAC 60145 Query 255497 TTGGCGTC 255504 ||||| || Sbjct 60146 TTGGCCTC 60153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588298982340455