Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06- 15] 1,819 sequences; 35,034,269 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1170 199 5e-46 >seq1170 Length=97779 Score = 199 bits (220), Expect = 5e-46 Identities = 926/1445 (64%), Gaps = 55/1445 (4%) Strand=Plus/Minus Query 110668 GTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGG 110727 |||||||| ||||| || ||||| | | | |||||||||| | ||||| || Sbjct 60727 GTTGACAACCTGGAACTCGCCGGCGAGAACACGGCGCTGGTAGATGTTGGAGGTGTAGGG 60668 Query 110728 TTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCAT 110787 || ||||| || || || |||||||| || | |||||||| || ||||| || || | Sbjct 60667 CTCGAAGCACTCGTTGTTGCCCAAGATCTGGGAAGTGGAGGCAGTAGGCATGGGAGCAAC 60608 Query 110788 CAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTA 110847 | | |||||| |||| ||| | ||||||||| | ||||| ||| |||||||| | Sbjct 60607 AAGCAAACTGTTGCGAACACCGTGCTCCTTGATTTGCTCCTTCAGAGAGTCCCAGTCCCA 60548 Query 110848 GTTG--AGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGA 110905 | | || || || || |||| ||||||| ||||||| | || ||||| || Sbjct 60547 GAGGTCAGAG-GGCTTGACATTCC-ACATGTCGTACTGAAGGATACCCTGGGAGATAGGG 60490 Query 110906 GAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGG 110965 || ||||| | || |||| ||| | | |||| || | | | ||| Sbjct 60489 GAGCCCTCGTACGTGGAGTAGGTACCCTCCTCCCTGGCCAGTTGAACGGACATGGTCAGA 60430 Query 110966 GATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATC- 111024 | ||||| || ||||| ||||| || ||| | || || ||| || || Sbjct 60429 GCGGCGTGGTAGATGGTCTCAAAAATCTTCTTATTGAGATCGCGAGCCTCAGGAGACTCG 60370 Query 111025 AAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGG 111084 ||| || | |||| | || |||| || ||||| || ||||| | ||| || || Sbjct 60369 AAAGGCAT-GCGGAGGGCGAGGAAGGCATCAGCAAGACCCTGGACACCAAGACCGATGGG 60311 Query 111085 TCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAAT 111141 | ||| ||||| || || | ||| || |||| ||||| || || ||||| Sbjct 60310 GCGGTGACGCATGTTG--CTGTTGCG-AGCCTCAGGAACGGGGTAGTGGTTGACATCAAT 60254 Query 111142 GACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAA 111201 || ||| || || ||| | || |||| || ||||| || | |||| | Sbjct 60253 GATCTTGTTCAGGTTGCGAACAACGACCTGAGTGACCTCGTGAAGCTTCTGGAAATCGTA 60194 Query 111202 AGTGCGAGTCTCTTCATTG------ACATACTTTGGAAGGGCGATTGATGCCAAATTGCA 111255 | | | |||||| || | | || ||||| | || ||||| ||||| Sbjct 60193 AACAC------CCTCATTGTAGTCAACGAAGGTAGGCAGGGCAAGAGAGGCCAAGTTGCA 60140 Query 111256 AACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTT 111315 ||||| |||||| | |||||| | ||| || || || | |||||| || Sbjct 60139 GACAGCGACCTCATCGGGGGCGCAGTACTCAATAATCTCAGTGCAGAGGTTGGAGCTGCG 60080 Query 111316 AATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTA 111375 || || || | ||||||||||| ||||| ||| ||||||||||| |||||| | Sbjct 60079 GATGGTTCCGAGGTTCTTTTGGTTGCTCTTGCGGTTCGCGGCATCCTTGTAAAGCATGAA 60020 Query 111376 GGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTGGTA 111434 ||| | || ||||| ||||| | | ||| || || | ||||| | || | | || | Sbjct 60019 GGGGTTGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTACCAAAGCTTCTGGGCCTTG-- 59962 Query 111435 CAATGGCGTTG-GCCCGT--CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCT 111491 |||| ||| | || | ||||| |||||||||| ||| | ||| |||||||||| Sbjct 59961 --ATGGTCTTGCGACCCTTGCCCTCGCGCTCGTACTTTTCGTACAAGGCCTCAAACTCCT 59904 Query 111492 CACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATT-GACCA 111550 | || ||| | || || || || || || || | || | ||||| | | Sbjct 59903 CGCCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGGCACATGAGGGTCCATTCGGCGT 59844 Query 111551 CCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGG--GATGAAAAGAGATCTC 111608 ||| ||| || | ||||||||| || || || ||||| ||| || |||| || || | Sbjct 59843 TCTT-CTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGGGCGAGGAAA--AGGTCAC 59787 Query 111609 -TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCC 111667 ||| || |||| || | || ||||| || || || | |||||| | || ||| Sbjct 59786 GGGCACGGA-CCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAACTCGAAGACATCG 59728 Query 111668 GCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTTGA 111721 |||||||| |||||||| |||| |||| | || ||||| ||| | || Sbjct 59727 GCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCACC---AGGACGCTTGTTGCCACCCTGG 59671 Query 111722 TTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGA 111781 | || ||||| || ||| ||| || || |||||||| ||||| | || | || Sbjct 59670 TCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACGCCGTTAGAGGTG 59611 Query 111782 CCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATA 111841 || || || || ||| || | |||| | | | || || | ||||| Sbjct 59610 CCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCACGGATACGGTGAGCGTTGAGGCCAATG 59551 Query 111842 CCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATT 111901 || |||||| ||| ||||| || || | | || || | |||||||| | || Sbjct 59550 CCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCCTCAATG 59491 Query 111902 GAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCT-TGGTGTACCAGC 111960 ||||| ||||| || ||| |||||||| |||| ||| | || || ||||| || Sbjct 59490 GAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTG-GCACTGAGGGGTACCGGC 59432 Query 111961 ATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTC 112018 |||||| || || || | ||||| ||| | | |||| |||||| || ||| ||| Sbjct 59431 ATTGAAAAGTGTGGGGGAGGCGTGTGTGA--AGAACTTGCTGGACATGAGGTTGTAGGTC 59374 Query 112019 TCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTAC 112078 || | ||| |||| || || || ||| |||| |||||| ||||||| ||||| | Sbjct 59373 TCGATGACGCGCTCAACATCGTCGCCCCAGATACCGACTGCGACACGCATGATCATGTGC 59314 Query 112079 TGTGG 112083 || || Sbjct 59313 TGCGG 59309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628017720122400