Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06-
15] 1,819 sequences; 35,034,269 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq1170 199 5e-46
>seq1170
Length=97779
Score = 199 bits (220), Expect = 5e-46
Identities = 926/1445 (64%), Gaps = 55/1445 (4%)
Strand=Plus/Minus
Query 110668 GTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGG 110727
|||||||| ||||| || ||||| | | | |||||||||| | ||||| ||
Sbjct 60727 GTTGACAACCTGGAACTCGCCGGCGAGAACACGGCGCTGGTAGATGTTGGAGGTGTAGGG 60668
Query 110728 TTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCAT 110787
|| ||||| || || || |||||||| || | |||||||| || ||||| || || |
Sbjct 60667 CTCGAAGCACTCGTTGTTGCCCAAGATCTGGGAAGTGGAGGCAGTAGGCATGGGAGCAAC 60608
Query 110788 CAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTA 110847
| | |||||| |||| ||| | ||||||||| | ||||| ||| |||||||| |
Sbjct 60607 AAGCAAACTGTTGCGAACACCGTGCTCCTTGATTTGCTCCTTCAGAGAGTCCCAGTCCCA 60548
Query 110848 GTTG--AGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGA 110905
| | || || || || |||| ||||||| ||||||| | || ||||| ||
Sbjct 60547 GAGGTCAGAG-GGCTTGACATTCC-ACATGTCGTACTGAAGGATACCCTGGGAGATAGGG 60490
Query 110906 GAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGG 110965
|| ||||| | || |||| ||| | | |||| || | | | |||
Sbjct 60489 GAGCCCTCGTACGTGGAGTAGGTACCCTCCTCCCTGGCCAGTTGAACGGACATGGTCAGA 60430
Query 110966 GATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATC- 111024
| ||||| || ||||| ||||| || ||| | || || ||| || ||
Sbjct 60429 GCGGCGTGGTAGATGGTCTCAAAAATCTTCTTATTGAGATCGCGAGCCTCAGGAGACTCG 60370
Query 111025 AAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGG 111084
||| || | |||| | || |||| || ||||| || ||||| | ||| || ||
Sbjct 60369 AAAGGCAT-GCGGAGGGCGAGGAAGGCATCAGCAAGACCCTGGACACCAAGACCGATGGG 60311
Query 111085 TCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAAT 111141
| ||| ||||| || || | ||| || |||| ||||| || || |||||
Sbjct 60310 GCGGTGACGCATGTTG--CTGTTGCG-AGCCTCAGGAACGGGGTAGTGGTTGACATCAAT 60254
Query 111142 GACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAA 111201
|| ||| || || ||| | || |||| || ||||| || | |||| |
Sbjct 60253 GATCTTGTTCAGGTTGCGAACAACGACCTGAGTGACCTCGTGAAGCTTCTGGAAATCGTA 60194
Query 111202 AGTGCGAGTCTCTTCATTG------ACATACTTTGGAAGGGCGATTGATGCCAAATTGCA 111255
| | | |||||| || | | || ||||| | || ||||| |||||
Sbjct 60193 AACAC------CCTCATTGTAGTCAACGAAGGTAGGCAGGGCAAGAGAGGCCAAGTTGCA 60140
Query 111256 AACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTT 111315
||||| |||||| | |||||| | ||| || || || | |||||| ||
Sbjct 60139 GACAGCGACCTCATCGGGGGCGCAGTACTCAATAATCTCAGTGCAGAGGTTGGAGCTGCG 60080
Query 111316 AATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTA 111375
|| || || | ||||||||||| ||||| ||| ||||||||||| |||||| |
Sbjct 60079 GATGGTTCCGAGGTTCTTTTGGTTGCTCTTGCGGTTCGCGGCATCCTTGTAAAGCATGAA 60020
Query 111376 GGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTGGTA 111434
||| | || ||||| ||||| | | ||| || || | ||||| | || | | || |
Sbjct 60019 GGGGTTGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTACCAAAGCTTCTGGGCCTTG-- 59962
Query 111435 CAATGGCGTTG-GCCCGT--CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCT 111491
|||| ||| | || | ||||| |||||||||| ||| | ||| ||||||||||
Sbjct 59961 --ATGGTCTTGCGACCCTTGCCCTCGCGCTCGTACTTTTCGTACAAGGCCTCAAACTCCT 59904
Query 111492 CACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATT-GACCA 111550
| || ||| | || || || || || || || | || | ||||| | |
Sbjct 59903 CGCCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGGCACATGAGGGTCCATTCGGCGT 59844
Query 111551 CCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGG--GATGAAAAGAGATCTC 111608
||| ||| || | ||||||||| || || || ||||| ||| || |||| || || |
Sbjct 59843 TCTT-CTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGGGCGAGGAAA--AGGTCAC 59787
Query 111609 -TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCC 111667
||| || |||| || | || ||||| || || || | |||||| | || |||
Sbjct 59786 GGGCACGGA-CCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAACTCGAAGACATCG 59728
Query 111668 GCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTTGA 111721
|||||||| |||||||| |||| |||| | || ||||| ||| | ||
Sbjct 59727 GCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCACC---AGGACGCTTGTTGCCACCCTGG 59671
Query 111722 TTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGA 111781
| || ||||| || ||| ||| || || |||||||| ||||| | || | ||
Sbjct 59670 TCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACGCCGTTAGAGGTG 59611
Query 111782 CCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATA 111841
|| || || || ||| || | |||| | | | || || | |||||
Sbjct 59610 CCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCACGGATACGGTGAGCGTTGAGGCCAATG 59551
Query 111842 CCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATT 111901
|| |||||| ||| ||||| || || | | || || | |||||||| | ||
Sbjct 59550 CCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCCTCAATG 59491
Query 111902 GAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCT-TGGTGTACCAGC 111960
||||| ||||| || ||| |||||||| |||| ||| | || || ||||| ||
Sbjct 59490 GAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTG-GCACTGAGGGGTACCGGC 59432
Query 111961 ATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTC 112018
|||||| || || || | ||||| ||| | | |||| |||||| || ||| |||
Sbjct 59431 ATTGAAAAGTGTGGGGGAGGCGTGTGTGA--AGAACTTGCTGGACATGAGGTTGTAGGTC 59374
Query 112019 TCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTAC 112078
|| | ||| |||| || || || ||| |||| |||||| ||||||| ||||| |
Sbjct 59373 TCGATGACGCGCTCAACATCGTCGCCCCAGATACCGACTGCGACACGCATGATCATGTGC 59314
Query 112079 TGTGG 112083
|| ||
Sbjct 59313 TGCGG 59309
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628017720122400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |