Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06- 15] 1,819 sequences; 35,034,269 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1170 217 2e-51 seq607 111 2e-19 >seq1170 Length=97779 Score = 217 bits (240), Expect = 2e-51 Identities = 1110/1752 (63%), Gaps = 57/1752 (3%) Strand=Plus/Minus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 || ||||||||||| ||||||||||| || |||||||| || | ||||| || Sbjct 61032 CGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCAGCGAAGTGCATGCTGGTG 60973 Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 117956 | |||| | || || | |||| || ||| | ||||| || || |||||| Sbjct 60972 ATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTGAGGGACTGGGACTGGTCAATGAAG 60913 Query 117957 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTG---ATTTCCCACACAGTC 118013 || ||||| || ||||| | || || | | || | |||||||| || ||| Sbjct 60912 GCACCACGATCGGCAGCCATCTGAA---CAACGGTGCGCTGGGAGATTTCCCAGACGGTC 60856 Query 118014 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCC 118073 |||| || ||| | || | ||||| | ||| || || | ||| ||| | Sbjct 60855 TTGTACAGAGCCTTGACCTCGGCGGGGATGTTAGGGATGTTCTGAACGGA---ACCGTTC 60799 Query 118074 TTGACCATGAGA---TCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCC 118130 | | | |||| | | |||||| | | ||||| | || || | ||||||| | Sbjct 60798 TCGGCGATGATACGGTTCTTCATGGCATCGGACCACAAGCCCATGTCGACAAGATCCTTC 60739 Query 118131 ACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTG 118190 | || |||||||| ||||| || ||||| || | | | ||||| ||| Sbjct 60738 AGCAGCCAGGGGTTGACAACCTGGAACTCGCCGGCGAGAACACGGCGCTGGTAGATGTTG 60679 Query 118191 GTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGC 118250 | ||||| ||||| |||||||| ||||| |||||||| |||| |||||||| || ||| Sbjct 60678 GAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGGGAAGTGGAGGCAGTAGGC 60619 Query 118251 ATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCG 118310 ||||| || | || | ||||| || | ||| | ||| | || | ||||| |||| | Sbjct 60618 ATGGGAGCAACAAGCAAACTGTTGCGAACACCGTGCTCCTTGATTTGCTCCTTCAGAGAG 60559 Query 118311 TCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGG 118370 |||||||| || | | || | | |||||| || |||| |||||||| ||| Sbjct 60558 TCCCAGTCCCAGAGGTCAGAGGGCTTGACATTCCACATGTCGTACTGAAGGATACCCTGG 60499 Query 118371 GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATT---CGGAG 118427 || || || ||||| | || || | ||||| || |||| || |||| Sbjct 60498 GAGATAGGGGAGCCCTCGTACGTGGAGTAGGTACCCTCCTCCCTGGCCAGTTGAACGGAC 60439 Query 118428 CTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCC 118487 | | | || || ||||| || || || |||||||| ||| | | ||| Sbjct 60438 ATGGTC---AGAGCGGCGTGGTAGATGGTCTCAAAAATCTTCTTATTGAGATCGCGAGCC 60382 Query 118488 TCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCG 118547 || || || || | | ||| | || |||| || ||||| |||||||| Sbjct 60381 TCAGGAGACTCGAAAGGCATGCGGAGGGCGAGGAAGGCATCAGCAAGACCCTGGACACCA 60322 Query 118548 AGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCC---ACGGGATAAAAA 118604 || || || ||||| || | ||| || || ||||| ||| ||||| || Sbjct 60321 AGACCGATGGGGCGGTGACGCATGTTGCTGTTGCGAGC---CTCAGGAACGGGGTAGTGG 60265 Query 118605 TTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTT 118664 || ||| || | | | || || || || |||| |||| || |||||||| Sbjct 60264 TTGACATCAATGATCTTGTTCAGGTTGCGAACAACGACCTGAGTGACCTCGTGAAGCTTC 60205 Query 118665 TCGTAATCA-AAACTGCG--AGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCC 118721 | | |||| |||| | | | | ||| || | |||| ||||| | || ||| Sbjct 60204 TGGAAATCGTAAACACCCTCATTGTAGTCAACGA---AGGTAGGCAGGGCAAGAGAGGCC 60148 Query 118722 AGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTT 118781 | || || |||| | |||||| | |||||| ||||| || ||||| | ||| Sbjct 60147 AAGTTGCAGACAGCGACCTCATCGGGGGCGCAGTACTCAATAATCTCAGTGCAGAGGTTG 60088 Query 118782 GAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAA 118841 || || ||||| || | ||||||||| || ||| ||| |||||||||||| Sbjct 60087 GAGCTGCGGATGGTTCCGAGGTTCTTTTGGTTGCTCTTGCGGTTCGCGGCATCCTTGTAA 60028 Query 118842 AGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGC 118900 |||||| | || | || ||||| || || | || ||| || || | ||| | | || | Sbjct 60027 AGCATGAAGGGGTTGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTACCAAAGCTTCTGG 59968 Query 118901 AGCTGGCACAGTGGCGTTGGCTCGC---CCCTCTTCCTCGTACTTTGTGTAGAGGGCTTC 118957 || | ||| ||| | | ||||| |||||||||| ||| | ||| || Sbjct 59967 GCCTTGA----TGGTCTTGCGACCCTTGCCCTCGCGCTCGTACTTTTCGTACAAGGCCTC 59912 Query 118958 AAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCA 119017 |||||| || || | || | || || || || | ||||| | ||| | ||| Sbjct 59911 AAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGGCACATGAGGGTCCA 59852 Query 119018 TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAG 119077 || | || ||| || | ||||||||| || || ||||||||||| || ||| || Sbjct 59851 TTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGGGCGAGGAAAAG 59792 Query 119078 ATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGAT 119137 || || || | || || | || || || ||||| |||| || || | || Sbjct 59791 GTCACGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAACTCGAAGAC 59732 Query 119138 ATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACGA------CCAGC 119191 ||| |||||||| || || ||||| | |||| | || | |||| ||| | Sbjct 59731 ATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCACC---AGGACGCTTGTTGCCACC 59675 Query 119192 CTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGA 119251 ||||| || || | |||||| ||| || ||||||||||| ||||||| || | || Sbjct 59674 CTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACGCCGTTAGA 59615 Query 119252 TTGGCCATTTGTCCCCCGAA--TACGAGACTTATTGGCTCTGACATCGTGGATGTGCATA 119309 ||| || || || || || ||| | | |||| | || | ||| || | Sbjct 59614 GGTGCCGTTGGTGCCGGCAATGTAGGAGCC--AGTGGCACGGATACGGTGAGCGTTGAGG 59557 Query 119310 CCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCA 119369 ||||| || || ||| ||| ||||| ||||| | |||| || ||||||| || Sbjct 59556 CCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCC 59497 Query 119370 TCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTG-GGTGT 119428 || || ||||| |||| | ||| ||||||||| |||| || | ||| || || Sbjct 59496 TCAATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTG-GCACTGAGGGGT 59438 Query 119429 ACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTTGTCG 119486 ||| || ||||| || || || | ||||| ||| | | |||| |||||| || | Sbjct 59437 ACCGGCATTGAAAAGTGTGGGGGAGGCGTGTGTGA--AGAACTTGCTGGACATGAGGTTG 59380 Query 119487 TAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAAC 119546 |||||||| | |||| || || || || ||||||| | ||| ||||| | | Sbjct 59379 TAGGTCTCGATGACGCGCTCAACATCGTCGCCCCAGATACCGACTGCGACACGCATGATC 59320 Query 119547 ATGTATTGGGGT 119558 |||| || ||| Sbjct 59319 ATGTGCTGCGGT 59308 >seq607 Length=5268 Score = 111 bits (122), Expect = 2e-19 Identities = 276/412 (67%), Gaps = 19/412 (5%) Strand=Plus/Plus Query 14066 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 14125 || || ||||| || || | || || | |||||| ||||| | ||| || ||||| Sbjct 3136 TCGAAACGACCGGGACGCATCAGCGCCTTGTCAAGAATATCGGCTCTGTTGGTGCCCGCG 3195 Query 14126 ATGACAACGATGCCCG-TCTCGT-TATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGA 14183 | |||||||| || | ||| | ||| || || |||||||| ||||||| || || | Sbjct 3196 AGGACAACGA--CCTGCTCTTGGGTATTGAAACCGTCCATCTCTGTCAAGATCTGGTTCA 3253 Query 14184 TGGTTTGTTCGCGTTCATCATTCGCAGGCATACCAC--CCGCACTGCGTTGCTT-ACCGA 14240 ||| |||||| |||||||| | ||| | || ||| ||| | ||| | Sbjct 3254 GAGTTGCTTCGCGCTCATCATTGCCGCCCATGCGGTTTCCTTCCTGTCTTGATCGACCAA 3313 Query 14241 CGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCAAAGA 14300 |||||| |||||||| ||||| | |||||| || | | | ||||| | |||| | Sbjct 3314 TGGCGTCGATTTCATCAATGAAGATGATACAGGGGGCACTCTTGCGGGCGTTTGCAAACA 3373 Query 14301 TATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAA- 14359 ||||||||||| | ||| ||||| ||||||||||| || || | ||||| Sbjct 3374 AGTCTCGCACTCTTGAAGGACCAACACCGACAAACATCTCGACGAACT------CGGAAC 3427 Query 14360 CATTG-----GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 14414 || || || |||||| || ||| || || ||| |||| ||| || | |||| Sbjct 3428 CACTGACGCTGAAGAAGGGCACACCAGACTCGCCAGCGGTGGCCTTGGCAAGCAACGTCT 3487 Query 14415 TCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 14466 | || || || || || ||||| | ||||||||| || ||| | || || Sbjct 3488 TACCGGTTCCAGGAGGTCCGGCGAGGATGGCACCACGAGGAATCTTTGCGCC 3539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618421138329640