Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06- 15] 1,819 sequences; 35,034,269 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1170 232 8e-56 seq607 113 5e-20 >seq1170 Length=97779 Score = 232 bits (256), Expect = 8e-56 Identities = 924/1438 (64%), Gaps = 41/1438 (3%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||||| || || ||||||| || || || |||| ||| Sbjct 59309 CCGCAGCACATGATCATGCGTGTCGCAGTCGGTATCTGGGGCGACGATGTTGAGCGCGTC 59368 Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339 | ||||| ||| || |||||| |||| | | ||| ||||| | || || || | Sbjct 59369 ATCGAGACCTACAACCTCATGTCCAGCAAGTTCT--TCACACACGCCTCCCCCACACTTT 59426 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 ||||||| ||||| || ||| |||| |||||||| ||| || ||||| | Sbjct 59427 TCAATGCCGGTACCCCTCAGTGCCAGCTGTCTTCATGCTTCCTCGTCGACATGAAGGAAG 59486 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 |||| || | |||||||| | || || | | || || ||||| ||| ||||| Sbjct 59487 ACTCCATTGAGGGTATCTACGACACCCTCAAGACCTGCGCCATGATCTCCAAGATGGCTG 59546 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519 | || ||||| | || || | | | |||| | || ||| || || | Sbjct 59547 GTGGCATTGGCCTCAACGCTCACCGTATCCGTGCCACTGGCTCCTACATTGCCGGCACCA 59606 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | || || | || | ||||| |||||||| || || ||| ||| || ||||| | Sbjct 59607 ACGGCACCTCTAACGGCGTCATTCCCATGCTTCGTGTCTTCAACAACACTGCTCGCTACG 59666 Query 104580 TAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 | | || | ||| ||||| || | |||| |||| |||||||| |||| Sbjct 59667 TCGACCAGGGTGGCAACAAGCGTCCT---GGTGCCTTCGCCATCTACCTTGAGCCCTGGC 59723 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693 |||| ||| || | |||||| | || ||||| ||||| || | ||||||| || Sbjct 59724 ACGCCGATGTCTTCGAGTTCATGGACTTGCGCAAGAACCACGGCAAGGAGGAGGTCCGTG 59783 Query 104694 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 104753 ||| || || ||| ||| |||||||| || ||||| |||||||||||||| ||| ||| Sbjct 59784 CCCGTGACCTTTTCCTCGCCCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAGAAGA 59843 Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTG 104813 | | | ||| | ||| | || || || || || || || | || | || | Sbjct 59844 ACGCCGAATGGACCCTCATGTGCCCCAACGAGTGCCCCGGCCTGGCTGACTGCTACGGCG 59903 Query 104814 AGGAGTTTGAAGCCCTTTACACAAAGTACGAG---GAAG---AAGGTCGGGCGACTGCGA 104867 |||||||||| ||| | ||| |||||||||| || | | ||||| ||| | Sbjct 59904 AGGAGTTTGAGGCCTTGTACGAAAAGTACGAGCGCGAGGGCAAGGGTCGCAAGACCATCA 59963 Query 104868 CGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 104927 || |||| || | ||| | || || ||| || |||| || ||||| || | | Sbjct 59964 AGG-CCCAGAAGC-----TTTGGTACGCCATCCTCGAGGCTCAGACTGAGACCGGCAACC 60017 Query 104928 CATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 104987 | | |||||||||||| || ||| |||| ||||| || |||||||| | || | Sbjct 60018 CCTTCATGCTTTACAAGGATGCCGCGAACCGCAAGAGCAACCAAAAGAACCTCGGAACCA 60077 Query 104988 TCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 105047 || || ||||| ||||| || || || | || | | | |||||| |||| Sbjct 60078 TCCGCAGCTCCAACCTCTGCACTGAGATTATTGAGTACTGCGCCCCCGATGAGGTCGCTG 60137 Query 105048 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTT- 105106 | || ||| | || || | || || || | | || || | | | | | | ||| Sbjct 60138 TCTGCAACTTGGCCTCTCTTGCCCTGCCTACCTTCGTTGA-CTACA-ATGAGGGTGTTTA 60195 Query 105107 -GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTAT 105165 |||| | || || ||||| || || | || ||||| |||| | || Sbjct 60196 CGATTTCCAGAAGCTTCACGAGGTCACTCAGGTCGTTGTTCGCAACCTGAACAAGATCAT 60255 Query 105166 TGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCC 105222 |||| || |||||||| |||| ||||| || || ||| | ||||| || Sbjct 60256 TGATGTCAACCACTACCCCGTTCCTGAG---GCTCGCAACAGCAACATGCGTCACCGCCC 60312 Query 105223 AATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTT-G 105281 || ||||| ||||| |||||||| || |||| ||| || || || || ||| | Sbjct 60313 CATCGGTCTTGGTGTCCAGGGTCTTGCTGATGCCTTC-CTCGCCCTCCGCATGCCTTTCG 60371 Query 105282 ATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTC 105341 | || || || || ||||| | || ||||||||||| || |||||||||| Sbjct 60372 AGTCTCCTGAGGCTCGCGATCTCAATAAGAAGATTTTTGAGACCATCTACCACGCCGCTC 60431 Query 105342 T--TGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTC 105399 | | | ||||| | | | ||| || || ||| | || || | ||||| || Sbjct 60432 TGACCATGTCCGTTCA-ACTGGCCAG-GGAGGAGGGTACCTACTCCACGTACGAGGGCTC 60489 Query 105400 TCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTA 105459 || || || || | ||||| | || |||||| | | || || | || Sbjct 60490 CCCTATCTCCCAGGGTATCCTTCAGTACGACATGTGGAATGTCAAGCCCTCTGACCTCTG 60549 Query 105460 CGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCAT 105519 |||||||| |||| ||||| | ||||||||| | ||| |||| |||||| | || | Sbjct 60550 GGACTGGGACTCTCTGAAGGAGCAAATCAAGGAGCACGGTGTTCGCAACAGTTTGCTTGT 60609 Query 105520 GGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACC 105579 ||||| ||||| || |||||||| | || |||||||| || || || ||||| || || Sbjct 60610 TGCTCCCATGCCTACTGCCTCCACTTCCCAGATCTTGGGCAACAACGAGTGCTTCGAGCC 60669 Query 105580 CTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAAC 105637 |||||| | |||||||| | | | | ||||| || ||||| | |||||||| Sbjct 60670 CTACACCTCCAACATCTACCAGCGCCGTGTTCTCGCCGGCGAGTTCCAGGTTGTCAAC 60727 >seq607 Length=5268 Score = 113 bits (124), Expect = 5e-20 Identities = 279/415 (67%), Gaps = 25/415 (6%) Strand=Plus/Plus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 || || ||||| ||||| | ||||| | ||||| ||||| | | || || | ||| Sbjct 3136 TCGAAACGACCGGGACGCATCAGCGCCTTGTCAAGAATATCGGCTCTGTTGGTGCCCGCG 3195 Query 9587 ATGACAACAATACCTGTT--TCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAA 9644 | |||||| | |||| | | ||| ||||| |||||||||||||| | ||||| | Sbjct 3196 AGGACAACGA--CCTGCTCTTGGGTATTGAAACCGTCCATCTCTGTCAAGATCTGGTTCA 3253 Query 9645 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCCA 9701 |||| ||| || |||||||| | ||| | || | ||| ||| | ||| Sbjct 3254 GAGTTGCTTCGCGCTCATCATTGCCGCCCATGCGGTTTCCTTC-CTGTCTTGATCGACCA 3312 Query 9702 C-GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAG 9760 ||| || || ||||||||||||| ||| || || | | | ||| ||| | |||| Sbjct 3313 ATGGCGTCGATTTCATCAATGAAGATGATACAGGGGGCACTCTTGCGGGCGTTTGCAAAC 3372 Query 9761 AGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 9818 | || || ||| |||| | || ||||| ||||||||||| || || | ||| Sbjct 3373 AAGTCTCG--CACTCTTGAAGGACCAACACCGACAAACATCTCGACGAACT------CGG 3424 Query 9819 AA-CATTG-----GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9872 || || || || |||||| ||| ||| || || || |||| ||| || | | Sbjct 3425 AACCACTGACGCTGAAGAAGGGCACACCAGACTCGCCAGCGGTGGCCTTGGCAAGCAACG 3484 Query 9873 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 ||||||| || || || || ||||||| |||||| || |||||||| ||||| Sbjct 3485 TCTTACCGGTTCCAGGAGGTCCGGCGAGGATGGCACCACGAGGAATCTTTGCGCC 3539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583247538107560