Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06-
15] 1,819 sequences; 35,034,269 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq1170 232 8e-56
seq607 113 5e-20
>seq1170
Length=97779
Score = 232 bits (256), Expect = 8e-56
Identities = 924/1438 (64%), Gaps = 41/1438 (3%)
Strand=Plus/Plus
Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281
|| ||| ||||| ||||||| || || ||||||| || || || |||| |||
Sbjct 59309 CCGCAGCACATGATCATGCGTGTCGCAGTCGGTATCTGGGGCGACGATGTTGAGCGCGTC 59368
Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339
| ||||| ||| || |||||| |||| | | ||| ||||| | || || || |
Sbjct 59369 ATCGAGACCTACAACCTCATGTCCAGCAAGTTCT--TCACACACGCCTCCCCCACACTTT 59426
Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399
||||||| ||||| || ||| |||| |||||||| ||| || ||||| |
Sbjct 59427 TCAATGCCGGTACCCCTCAGTGCCAGCTGTCTTCATGCTTCCTCGTCGACATGAAGGAAG 59486
Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459
|||| || | |||||||| | || || | | || || ||||| ||| |||||
Sbjct 59487 ACTCCATTGAGGGTATCTACGACACCCTCAAGACCTGCGCCATGATCTCCAAGATGGCTG 59546
Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519
| || ||||| | || || | | | |||| | || ||| || || |
Sbjct 59547 GTGGCATTGGCCTCAACGCTCACCGTATCCGTGCCACTGGCTCCTACATTGCCGGCACCA 59606
Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579
| || || | || | ||||| |||||||| || || ||| ||| || ||||| |
Sbjct 59607 ACGGCACCTCTAACGGCGTCATTCCCATGCTTCGTGTCTTCAACAACACTGCTCGCTACG 59666
Query 104580 TAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633
| | || | ||| ||||| || | |||| |||| |||||||| ||||
Sbjct 59667 TCGACCAGGGTGGCAACAAGCGTCCT---GGTGCCTTCGCCATCTACCTTGAGCCCTGGC 59723
Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693
|||| ||| || | |||||| | || ||||| ||||| || | ||||||| ||
Sbjct 59724 ACGCCGATGTCTTCGAGTTCATGGACTTGCGCAAGAACCACGGCAAGGAGGAGGTCCGTG 59783
Query 104694 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 104753
||| || || ||| ||| |||||||| || ||||| |||||||||||||| ||| |||
Sbjct 59784 CCCGTGACCTTTTCCTCGCCCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAGAAGA 59843
Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTG 104813
| | | ||| | ||| | || || || || || || || | || | || |
Sbjct 59844 ACGCCGAATGGACCCTCATGTGCCCCAACGAGTGCCCCGGCCTGGCTGACTGCTACGGCG 59903
Query 104814 AGGAGTTTGAAGCCCTTTACACAAAGTACGAG---GAAG---AAGGTCGGGCGACTGCGA 104867
|||||||||| ||| | ||| |||||||||| || | | ||||| ||| |
Sbjct 59904 AGGAGTTTGAGGCCTTGTACGAAAAGTACGAGCGCGAGGGCAAGGGTCGCAAGACCATCA 59963
Query 104868 CGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 104927
|| |||| || | ||| | || || ||| || |||| || ||||| || | |
Sbjct 59964 AGG-CCCAGAAGC-----TTTGGTACGCCATCCTCGAGGCTCAGACTGAGACCGGCAACC 60017
Query 104928 CATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 104987
| | |||||||||||| || ||| |||| ||||| || |||||||| | || |
Sbjct 60018 CCTTCATGCTTTACAAGGATGCCGCGAACCGCAAGAGCAACCAAAAGAACCTCGGAACCA 60077
Query 104988 TCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 105047
|| || ||||| ||||| || || || | || | | | |||||| ||||
Sbjct 60078 TCCGCAGCTCCAACCTCTGCACTGAGATTATTGAGTACTGCGCCCCCGATGAGGTCGCTG 60137
Query 105048 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTT- 105106
| || ||| | || || | || || || | | || || | | | | | | |||
Sbjct 60138 TCTGCAACTTGGCCTCTCTTGCCCTGCCTACCTTCGTTGA-CTACA-ATGAGGGTGTTTA 60195
Query 105107 -GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTAT 105165
|||| | || || ||||| || || | || ||||| |||| | ||
Sbjct 60196 CGATTTCCAGAAGCTTCACGAGGTCACTCAGGTCGTTGTTCGCAACCTGAACAAGATCAT 60255
Query 105166 TGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCC 105222
|||| || |||||||| |||| ||||| || || ||| | ||||| ||
Sbjct 60256 TGATGTCAACCACTACCCCGTTCCTGAG---GCTCGCAACAGCAACATGCGTCACCGCCC 60312
Query 105223 AATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTT-G 105281
|| ||||| ||||| |||||||| || |||| ||| || || || || ||| |
Sbjct 60313 CATCGGTCTTGGTGTCCAGGGTCTTGCTGATGCCTTC-CTCGCCCTCCGCATGCCTTTCG 60371
Query 105282 ATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTC 105341
| || || || || ||||| | || ||||||||||| || ||||||||||
Sbjct 60372 AGTCTCCTGAGGCTCGCGATCTCAATAAGAAGATTTTTGAGACCATCTACCACGCCGCTC 60431
Query 105342 T--TGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTC 105399
| | | ||||| | | | ||| || || ||| | || || | ||||| ||
Sbjct 60432 TGACCATGTCCGTTCA-ACTGGCCAG-GGAGGAGGGTACCTACTCCACGTACGAGGGCTC 60489
Query 105400 TCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTA 105459
|| || || || | ||||| | || |||||| | | || || | ||
Sbjct 60490 CCCTATCTCCCAGGGTATCCTTCAGTACGACATGTGGAATGTCAAGCCCTCTGACCTCTG 60549
Query 105460 CGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCAT 105519
|||||||| |||| ||||| | ||||||||| | ||| |||| |||||| | || |
Sbjct 60550 GGACTGGGACTCTCTGAAGGAGCAAATCAAGGAGCACGGTGTTCGCAACAGTTTGCTTGT 60609
Query 105520 GGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACC 105579
||||| ||||| || |||||||| | || |||||||| || || || ||||| || ||
Sbjct 60610 TGCTCCCATGCCTACTGCCTCCACTTCCCAGATCTTGGGCAACAACGAGTGCTTCGAGCC 60669
Query 105580 CTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAAC 105637
|||||| | |||||||| | | | | ||||| || ||||| | ||||||||
Sbjct 60670 CTACACCTCCAACATCTACCAGCGCCGTGTTCTCGCCGGCGAGTTCCAGGTTGTCAAC 60727
>seq607
Length=5268
Score = 113 bits (124), Expect = 5e-20
Identities = 279/415 (67%), Gaps = 25/415 (6%)
Strand=Plus/Plus
Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586
|| || ||||| ||||| | ||||| | ||||| ||||| | | || || | |||
Sbjct 3136 TCGAAACGACCGGGACGCATCAGCGCCTTGTCAAGAATATCGGCTCTGTTGGTGCCCGCG 3195
Query 9587 ATGACAACAATACCTGTT--TCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAA 9644
| |||||| | |||| | | ||| ||||| |||||||||||||| | ||||| |
Sbjct 3196 AGGACAACGA--CCTGCTCTTGGGTATTGAAACCGTCCATCTCTGTCAAGATCTGGTTCA 3253
Query 9645 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCCA 9701
|||| ||| || |||||||| | ||| | || | ||| ||| | |||
Sbjct 3254 GAGTTGCTTCGCGCTCATCATTGCCGCCCATGCGGTTTCCTTC-CTGTCTTGATCGACCA 3312
Query 9702 C-GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAG 9760
||| || || ||||||||||||| ||| || || | | | ||| ||| | ||||
Sbjct 3313 ATGGCGTCGATTTCATCAATGAAGATGATACAGGGGGCACTCTTGCGGGCGTTTGCAAAC 3372
Query 9761 AGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 9818
| || || ||| |||| | || ||||| ||||||||||| || || | |||
Sbjct 3373 AAGTCTCG--CACTCTTGAAGGACCAACACCGACAAACATCTCGACGAACT------CGG 3424
Query 9819 AA-CATTG-----GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9872
|| || || || |||||| ||| ||| || || || |||| ||| || | |
Sbjct 3425 AACCACTGACGCTGAAGAAGGGCACACCAGACTCGCCAGCGGTGGCCTTGGCAAGCAACG 3484
Query 9873 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927
||||||| || || || || ||||||| |||||| || |||||||| |||||
Sbjct 3485 TCTTACCGGTTCCAGGAGGTCCGGCGAGGATGGCACCACGAGGAATCTTTGCGCC 3539
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583247538107560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |