Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06- 15] 1,819 sequences; 35,034,269 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq866 134 4e-26 seq1295 125 2e-23 >seq866 Length=7889 Score = 134 bits (148), Expect = 4e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | ||||| | || || || ||||| || ||||| || || || Sbjct 2647 CATACCACCGCGAAGACGGAGAACCAAGTGGAGCGTGGACTCCTTCTGAATGTTGTAGTC 2588 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| |||||||| || ||||||||||| | ||| ||||| ||||| Sbjct 2587 GGAGAGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGG 2528 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || |||||||| || | || || || || || | |||||| | || Sbjct 2527 AGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTATCAGAAGACTC 2468 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || ||||| || | ||||| ||||| || || || || Sbjct 2467 GACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 2429 Score = 129 bits (142), Expect = 2e-24 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || |||||||| || |||||||| || || || || || || Sbjct 2875 CATACCACCACGCAGACGGAGGACAAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTC 2816 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || || || || || || ||||| || ||||| || ||||| | || ||||| || || Sbjct 2815 CGACAACGTGCGACCGTCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGG 2756 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || ||||| || || || | || || || ||||| | || || | ||| Sbjct 2755 GGGGATACCCTCCTTATCTTGGATCTTCGACTTAACGTTGTCAATGGTGTCTGAAGATTC 2696 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || || | |||||| || || || || || || || |||||||| Sbjct 2695 AACCTCGAGCGTGATTGTCTTGCCAGTAAGAGTCTTCACGAAGATCTGCAT 2645 Score = 120 bits (132), Expect = 9e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | ||||| | ||||| |||||||| || || || || | Sbjct 2365 TTTGCATACCACCACGAAGGCGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGT 2306 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || || || ||||| ||||| ||||| || || ||||| ||||||| Sbjct 2305 AGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGTTTGCCAGCGAAAATGAGACGCTGCTGAT 2246 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| || || || || ||||| || | || || || || || | ||| |||| Sbjct 2245 CGGGGGGAATGCCCTCCTTGTCTTGAATCTTGGACTTGACGTTGTCGATGGTATCGGATG 2186 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 || || || || || | ||||| ||||| Sbjct 2185 ACTCGACCTCGAGAGTGATGGTCTTGCCGGT 2155 Score = 116 bits (128), Expect = 1e-20 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || |||||||| || || || || || || || || || | || || |||||| Sbjct 3084 AGGACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCT 3025 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || | || |||||||| ||||| ||||| ||||| || ||||| || || || |||||| Sbjct 3024 TCCAACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTATCC 2965 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 ||||| |||| || || || ||||||| || |||| || || || | |||| ||| Sbjct 2964 TGAATCTTAGACTTCACGTTGTCAATCGTGTCTGATGACTCGACCTCCAAGGTAATCGTC 2905 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | || || || || |||||||| Sbjct 2904 TTGCCAGTCAACGTCTTCACGAAGATCTGCAT 2873 >seq1295 Length=19304 Score = 125 bits (138), Expect = 2e-23 Identities = 217/314 (69%), Gaps = 1/314 (0%) Strand=Plus/Minus Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678 ||||| || ||||| || || || |||||||| || || || || || || |||| Sbjct 14474 ACTGTCCCCGCCTACTTCAACGACTCCCAGCGTCAAGCTACCAAGGACGCAGGTCTCATT 14415 Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738 || || | || || || | || || || || || || || || || ||||| || || Sbjct 14414 GCCGGCCTCAACGTCCTTCGTATCATCAACGAGCCTACCGCCGCTGCCATTGCCTACGGT 14355 Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798 ||||| || | | || || || |||| || || ||| | |||||||||||| Sbjct 14354 CTTGACAAGAAGGCCGAGGGCGAGCGCAACGTTCTCATCTTCGATCTTGGTGGTGGTACT 14295 Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858 || ||||| || || || || |||| ||||| ||||| || || || | || |||||| Sbjct 14294 TTCGATGTGTCTCTTCTGACCATTGAGGAGGGCATTTTCGAGGTCAAGTCCACCGCTGGT 14235 Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAA 349918 || || || | ||||| || || ||||| || |||||||| || || || || || Sbjct 14234 GACACTCACTTGGGTGGTGAGGACTTTGACAACCGTCTCGTCAACCACTTCGTCAACGAG 14175 Query 349919 TTTAAGCGTCAAGC 349932 || ||||| ||||| Sbjct 14174 TTCAAGCG-CAAGC 14162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515219085575657