Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06-
15] 1,819 sequences; 35,034,269 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq866 134 4e-26
seq1295 125 2e-23
>seq866
Length=7889
Score = 134 bits (148), Expect = 4e-26
Identities = 161/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
||||||||| || | | ||||| | || || || ||||| || ||||| || || ||
Sbjct 2647 CATACCACCGCGAAGACGGAGAACCAAGTGGAGCGTGGACTCCTTCTGAATGTTGTAGTC 2588
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || ||||| |||||||| || ||||||||||| | ||| ||||| |||||
Sbjct 2587 GGAGAGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGG 2528
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|||||| || || || |||||||| || | || || || || || | |||||| | ||
Sbjct 2527 AGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTATCAGAAGACTC 2468
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725
|| ||||| || | ||||| ||||| || || || ||
Sbjct 2467 GACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 2429
Score = 129 bits (142), Expect = 2e-24
Identities = 167/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || |||||||| || |||||||| || || || || || ||
Sbjct 2875 CATACCACCACGCAGACGGAGGACAAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTC 2816
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| || || || || || ||||| || ||||| || ||||| | || ||||| || ||
Sbjct 2815 CGACAACGTGCGACCGTCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGG 2756
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || ||||| || || || | || || || ||||| | || || | |||
Sbjct 2755 GGGGATACCCTCCTTATCTTGGATCTTCGACTTAACGTTGTCAATGGTGTCTGAAGATTC 2696
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||| || || || | |||||| || || || || || || || ||||||||
Sbjct 2695 AACCTCGAGCGTGATTGTCTTGCCAGTAAGAGTCTTCACGAAGATCTGCAT 2645
Score = 120 bits (132), Expect = 9e-22
Identities = 153/211 (73%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| | | ||||| | ||||| |||||||| || || || || |
Sbjct 2365 TTTGCATACCACCACGAAGGCGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGT 2306
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || | || || || || ||||| ||||| ||||| || || ||||| |||||||
Sbjct 2305 AGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGTTTGCCAGCGAAAATGAGACGCTGCTGAT 2246
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| || ||||| || || || || ||||| || | || || || || || | ||| ||||
Sbjct 2245 CGGGGGGAATGCCCTCCTTGTCTTGAATCTTGGACTTGACGTTGTCGATGGTATCGGATG 2186
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713
|| || || || || | ||||| |||||
Sbjct 2185 ACTCGACCTCGAGAGTGATGGTCTTGCCGGT 2155
Score = 116 bits (128), Expect = 1e-20
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585
|| || |||||||| || || || || || || || || || | || || ||||||
Sbjct 3084 AGGACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCT 3025
Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645
|| | || |||||||| ||||| ||||| ||||| || ||||| || || || ||||||
Sbjct 3024 TCCAACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTATCC 2965
Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705
||||| |||| || || || ||||||| || |||| || || || | |||| |||
Sbjct 2964 TGAATCTTAGACTTCACGTTGTCAATCGTGTCTGATGACTCGACCTCCAAGGTAATCGTC 2905
Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || | || || || || ||||||||
Sbjct 2904 TTGCCAGTCAACGTCTTCACGAAGATCTGCAT 2873
>seq1295
Length=19304
Score = 125 bits (138), Expect = 2e-23
Identities = 217/314 (69%), Gaps = 1/314 (0%)
Strand=Plus/Minus
Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678
||||| || ||||| || || || |||||||| || || || || || || ||||
Sbjct 14474 ACTGTCCCCGCCTACTTCAACGACTCCCAGCGTCAAGCTACCAAGGACGCAGGTCTCATT 14415
Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738
|| || | || || || | || || || || || || || || || ||||| || ||
Sbjct 14414 GCCGGCCTCAACGTCCTTCGTATCATCAACGAGCCTACCGCCGCTGCCATTGCCTACGGT 14355
Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798
||||| || | | || || || |||| || || ||| | ||||||||||||
Sbjct 14354 CTTGACAAGAAGGCCGAGGGCGAGCGCAACGTTCTCATCTTCGATCTTGGTGGTGGTACT 14295
Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858
|| ||||| || || || || |||| ||||| ||||| || || || | || ||||||
Sbjct 14294 TTCGATGTGTCTCTTCTGACCATTGAGGAGGGCATTTTCGAGGTCAAGTCCACCGCTGGT 14235
Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAA 349918
|| || || | ||||| || || ||||| || |||||||| || || || || ||
Sbjct 14234 GACACTCACTTGGGTGGTGAGGACTTTGACAACCGTCTCGTCAACCACTTCGTCAACGAG 14175
Query 349919 TTTAAGCGTCAAGC 349932
|| ||||| |||||
Sbjct 14174 TTCAAGCG-CAAGC 14162
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515219085575657
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |