Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06- 15] 1,819 sequences; 35,034,269 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1170 526 2e-144 >seq1170 Length=97779 Score = 526 bits (582), Expect = 2e-144 Identities = 1175/1749 (67%), Gaps = 45/1749 (3%) Strand=Plus/Minus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 || |||| ||||||||||||||||||||||| |||||| || | |||||| || Sbjct 61035 GTACGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCAGCGAAGTGCATGCTG 60976 Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309 | | |||| ||| |||||| || |||| ||||||||| |||||||||||||| ||| Sbjct 60975 GTGATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTGAGGGACTGGGACTGGTCAATG 60916 Query 78310 TACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTC 78369 | ||||| || ||||| ||||| | | || | || | || ||||||| |||| Sbjct 60915 AAGGCACCACGATCGGCAGCCATCTGAACAACGGTGCGCTGGGAGATTTCCCAGACGGTC 60856 Query 78370 CGGTAAATGGCCTTCAGCTCTTCCTGGATGTCCAGCGCT----TGTACGCTCCCACCGG- 78424 ||| | ||||| | ||| | |||||| || | | || ||| |||| Sbjct 60855 TTGTACAGAGCCTTGACCTCGGCGGGGATGTT-AGGGATGTTCTGAACGGA---ACCGTT 60800 Query 78425 CTCGCACA--ATTTCATTCTTAATTTGAGGGTTCCA---GCGATTGATCTTCTGAAGATC 78479 |||| | || ||||| || | | ||| || || || | |||||| Sbjct 60799 CTCGGCGATGATACGGTTCTTCATGGCATCGGACCACAAGCCCATG-TCGAC--AAGATC 60743 Query 78480 CCGGACCAGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAGAT 78539 | | ||| |||| | | |||||||||||| || |||||| ||||||| Sbjct 60742 CTTCAGCAGCCAGGGGTTGACAACCTGGAACTCGCCGGCGAGAACACGGCGCTGGTAGAT 60683 Query 78540 GTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGT 78599 ||||| ||||| |||||||| ||||||||| |||| |||||||| || ||||| || Sbjct 60682 GTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGGGAAGTGGAGGCAGT 60623 Query 78600 CGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACCTTTAG 78659 |||||||| || || || | | || |||| ||| ||| |||||| | |||| || Sbjct 60622 AGGCATGGGAGCAACAAGCAAACTGTTGCGAACACCGTGCTCCTTGATTTGCTCCTTCAG 60563 Query 78660 G------CCGTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGATACC 78713 | |||||| | ||| | | || ||||||||| ||||||||||| Sbjct 60562 AGAGTCCCAGTCCCAGAGGTCAGAGGGCTTGACATTCCACATGTCGTACTGAAGGATACC 60503 Query 78714 CTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCA 78773 || ||| || || |||| | |||| ||| | ||||||||| |||| |||| Sbjct 60502 CTGGGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTACCCTCCTCCCTGGCCAGTTGAAC 60443 Query 78774 TGACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGC 78833 ||| | ||| || |||||||| | | ||| || || ||| ||||| ||||| || Sbjct 60442 GGACATGGTCAGAGCGGCGTGGTAGATGGTCTCAAAAATCTTCTTATTGAGATCGCGAGC 60383 Query 78834 CTTGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCC 78893 || | ||||| | | || ||| | |||| |||| || || |||||||| || Sbjct 60382 CTCAGGAGACTCGAAAGGCATGCGGAGGGCGAGGAAGGCATCAGCAAGACCCTGGACACC 60323 Query 78894 GATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTCGGGTAAAAGTT 78953 | | |||| || ||||| ||||||||||| || || ||| | ||||| ||| Sbjct 60322 AAGACCGATGGGGCGGTGACGCATGTTGCTGTTGCGAGCCTCAGGAACGGGGTAGTGGTT 60263 Query 78954 CCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACAATTTGGC 79013 ||| |||| ||||||||| || |||||| |||| ||||||| | || Sbjct 60262 GACATCAATGATCTTGTTCAGGTTGCGAACAACGACCTGAGTGACCTCGTGAAGCTTCTG 60203 Query 79014 GAAATCAAAATGATTTCCTTTGATG--AAAGTCGGTAGGCACAGC----GATGCCAGGTT 79067 |||||| || | | ||| | || | |||||||| || || |||| ||| Sbjct 60202 GAAATCGTAAACACCCTCATTGTAGTCAACGAAGGTAGGCAGGGCAAGAGAGGCCAAGTT 60143 Query 79068 GCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGA 79127 ||| || || ||| || ||| | ||| || || || ||||| | || || Sbjct 60142 GCAGACAGCGACCTCATCGGGGGCGCAGTACTCAATAATCTCAGTGCAGAGGTTGGAGCT 60083 Query 79128 CTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACAT 79187 |||||| |||| |||||| ||||||||||| ||| ||| |||||||| ||| Sbjct 60082 GCGGATGGTTCCGAGGTTCTTTTGGTTGCTCTTGCGGTTCGCGGCATCCTTGTAAAGCAT 60023 Query 79188 GTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCCG 79247 | | || | ||||||||| |||| || ||| | | ||| ||| | | | ||||| Sbjct 60022 GAAGGGGTTGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTACCAAAGCTTCTGGGCCTT 59963 Query 79248 GACAACCTTCTTGTACCGACCCTGT-----GCGA-CGTACGTCCGGTACAACTCGTTGAA 79301 || ||||| ||||||| ||| ||||| | |||||| | | || Sbjct 59962 GATGG---TCTTG---CGACCCTTGCCCTCGCGCTCGTACTTTTCGTACAAGGCCTCAAA 59909 Query 79302 AGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTC 79361 |||| || ||| || | |||||| |||||||||| |||||||| ||| ||| || Sbjct 59908 CTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGGCACATGAGGGTCCATTC 59849 Query 79362 CTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTC 79421 ||| |||||| || ||| |||||| || || |||||||| ||||| ||| ||||| Sbjct 59848 GGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGGGCGAGGAAAAGGTC 59789 Query 79422 GCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTC 79481 ||| ||| | |||||| | ||| |||||| |||| || | || || | || || Sbjct 59788 ACGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAACTCGAAGACATC 59729 Query 79482 GGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTT 79541 ||||||||| ||||| || ||||||||||| | ||| |||||| ||| ||||||| Sbjct 59728 GGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCACCAGGACGCTTGTTGCCACCCTGGTC 59669 Query 79542 GACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCC 79601 |||||| || || ||||||||||| || || |||||||| | || ||||| | | ||| Sbjct 59668 GACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACGCCGTTAGAGGTGCC 59609 Query 79602 GTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAAT--GTTCGAGCAGTGGATTCCGATG 79659 ||| || ||| || | || | || || || | | |||| || || || ||| Sbjct 59608 GTTGGTGCCGGCAATGTAGGAGCCAGTGGCACGGATACGGT-GAGC-GTTGAGGCCAATG 59551 Query 79660 CCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATC 79719 || || | | ||||||||| ||||| |||||| || |||||||| ||||| || Sbjct 59550 CCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCCTCAATG 59491 Query 79720 GAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCG 79779 ||||| |||||||| |||| |||||||| |||| ||| | |||||||| Sbjct 59490 GAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAGGGGTACCGGCA 59431 Query 79780 TTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCC 79839 ||||| || || || | ||||| ||||||||||| | ||| || | ||| ||||| Sbjct 59430 TTGAAAAGTGTGGGGGAGGCGTGTGTGAAGAACTTGCTGGACATGAGGTTGTAGGTCTCG 59371 Query 79840 TTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTGG 79899 |||||||| | |||||||| ||| ||||| ||||| ||||||| | || ||| Sbjct 59370 ATGACGCGCTCAACATCGTCGCCCCAGATACCGACTGCGACACGCATGATCATGTGCTGC 59311 Query 79900 GGCGTCTCG 79908 || ||||| Sbjct 59310 GGTCTCTCG 59302 Score = 439 bits (486), Expect = 3e-118 Identities = 1166/1752 (67%), Gaps = 53/1752 (3%) Strand=Plus/Plus Query 19097 GAGACGCCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCG 19156 |||| || ||| || | ||||||| ||||| ||||| ||| |||||||| | | Sbjct 59303 GAGAGACCGCAGCACATGATCATGCGTGTCGCAGTCGGTATCTGGGGCGACGATGTTGAG 59362 Query 19157 CGAGTCCGCGAGACATACGACCTGATGAGCCAG-AAGTTCTTCACGCACGCGACGCCGAC 19215 || ||| |||||| ||| |||| ||| |||| ||||||||||| ||||| | || || Sbjct 59363 CGCGTCATCGAGACCTACAACCTCATGT-CCAGCAAGTTCTTCACACACGCCTCCCCCAC 59421 Query 19216 CCTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAA 19275 |||||||| |||||||| | ||| |||| || ||||| || | ||||| Sbjct 59422 ACTTTTCAATGCCGGTACCCCTCAGTGCCAGCTGTCTTCATGCTTCCTCGTCGACATGAA 59481 Query 19276 GGATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTG 19335 ||| ||| ||||||||| |||||||| || |||||| ||||| ||||||||| Sbjct 59482 GGAAGACTCCATTGAGGGTATCTACGACACCCTCAAGACCTGCGCCATGATCTCCAAGAT 59541 Query 19336 GTCCGGGGGTATCGGGATCCACTGCTCGAA-TATCCGGTCGAGTGGTACACGAATCAATG 19394 | | || || || || || || |||| |||||| | | ||| | || | Sbjct 59542 GGCTGGTGGCATTGGCCTCAAC-GCTCACCGTATCCGTGCCACTGGCTCCTACATTGCCG 59600 Query 19395 GGACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCA 19454 | || ||||| | |||| || | || ||||| || |||||||||||||| || Sbjct 59601 GCACCAACGGCACCTCTAACGGCGTCATTCCCATGCTTCGTGTCTTCAACAACACTGCTC 59660 Query 19455 GGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCAT 19514 | |||||| ||||||| ||| ||| || || | |||||||||||||| ||||| | Sbjct 59661 GCTACGTCGACCAGGGTGGCAACAAGCGTCCTGGTGCCTTCGCCATCTACCTTGAGCCCT 59720 Query 19515 GGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGC 19574 ||||||| || ||| | || ||| | || ||||| |||||| || | |||||| | | Sbjct 59721 GGCACGCCGATGTCTTCGAGTTCATGGACTTGCGCAAGAACCACGGCAAGGAGGAGGTCC 59780 Query 19575 GCTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGA 19634 | || ||||| ||| ||| | ||||| || || || |||||| ||| || |||| Sbjct 59781 GTGCCCGTGACCTTTTCCTCGCCCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAGA 59840 Query 19635 AGGACGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACG 19694 || ||| |||||| ||| |||||||| |||| ||||| ||||| | ||| ||||| Sbjct 59841 AGAACGCCGAATGGACCCTCATGTGCCCCAACGAGTGCCCCGGCCTGGCTGACTGCTACG 59900 Query 19695 GCGAGGCGTTCAATGAGTTGTACCGGACTTACGTAGC-CCAGGGC-CGGTTCAAGAAGGT 19752 |||||| ||| | | |||||| | |||| ||| | ||||| || || ||| Sbjct 59901 GCGAGGAGTTTGAGGCCTTGTACGAAAAGTACG-AGCGCGAGGGCAAGGGTC-GCAAGAC 59958 Query 19753 GGTCCGGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACC 19812 || ||||| | | | ||| || | ||||| | ||| |||||||||| || Sbjct 59959 CATCAAGGCCCAGAAGCTTTGGTACGCCATCCTCGAGGCTCAGACTGAGACCGGCAACCC 60018 Query 19813 GTACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGAT 19872 | |||| |||||||| ||||||||| |||| || || |||||| |||| | || Sbjct 60019 CTTCATGCTTTACAAGGATGCCGCGAACCGCAAGAGCAACCAAAAGAACCTCGGAACCAT 60078 Query 19873 CAAGTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGT 19932 | |||||||| || ||||| || || ||| | | || || ||| || || Sbjct 60079 CCGCAGCTCCAACCTCTGCACTGAGATTATTGAGTACTGCGCCCCCGATGAGGTCGCTGT 60138 Query 19933 GTGTAATCTGGCGTCCCTGTGCCTGCCGACTTTCGT------CAAGGCCTCCTCCTTCGA 19986 || || |||| || || |||||| || ||||| ||| | | ||| Sbjct 60139 CTGCAACTTGGCCTCTCTTGCCCTGCCTACCTTCGTTGACTACAATGAGGGTGTTTACGA 60198 Query 19987 CTTTGCCAAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGA 20046 || || | ||||||| || | |||||| || || ||||| |||| || Sbjct 60199 TTTCCAGAAGCTTCACGAGGTCACTCAGGTCGTTGTTCGCAACCTGAACAAGATCATTGA 60258 Query 20047 TCGGAACTTTTACCCGACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGC 20106 | ||| ||||| | ||| ||||| || ||||| ||||| || |||| Sbjct 60259 TGTCAACCACTACCCCGTTCCTGAGGCTCGCAACAGCAACATGCGTCACCGCCCCATCGG 60318 Query 20107 GATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATCC 20166 | || |||||||| || || || | ||| | ||| || | | ||||| ||| Sbjct 60319 TCTTGGTGTCCAGGGTCTTGCTGATGCCTTCCTCGCCCTCCGCATGCCTTTCGAGTCTCC 60378 Query 20167 CAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCT--CCTG 20224 |||| ||||| ||||| ||| || || ||| || | |||||||| || || || Sbjct 60379 TGAGGCTCGCGATCTCAATAAGAAGATTTTTGAGACCATCTACCACGCCGCTCTGACCAT 60438 Query 20225 GAATCGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCG 20284 | ||| | |||| |||| ||||| || | ||| |||| | |||| || || Sbjct 60439 G-TCCGTTC-AACTGGCCAGGGAGGAGGGTACCTACTCCACGTACGAGGGCTCCCCTATC 60496 Query 20285 TCCGAGGGTATCCTCCAGCCGGACATGTGGGGCGTCA------CTGA-GAATGAGTTTTG 20337 ||| |||||||||| ||| ||||||||| |||| |||| || | | | Sbjct 60497 TCCCAGGGTATCCTTCAGTACGACATGTGGAATGTCAAGCCCTCTGACCTCTGGGACTGG 60556 Query 20338 GAGCGCCCTCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCC 20397 || | | || |||| | |||||| ||||| |||||||| ||||| || || || Sbjct 60557 GA-CTCTCTGAAGGAGCAAATCAAGGAGCACGGTGTTCGCAACAGTTTGCTTGTTGCTCC 60615 Query 20398 CATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACAC 20457 |||||| || ||||| || |||||||| |||| ||||||||| |||||||| ||||| Sbjct 60616 CATGCCTACTGCCTCCACTTCCCAGATCTTGGGCAACAACGAGTGCTTCGAGCCCTACAC 60675 Query 20458 GACCAACATCTACTTGCGTCGTACACTGGCCGGTGAGTTCGTCATGGTAAACAAGCACCT 20517 ||||||||||| ||| ||| || ||||| |||||| || ||| ||| | ||| Sbjct 60676 CTCCAACATCTACCAGCGCCGTGTTCTCGCCGGCGAGTTC--CA-GGTTGTCAA-CCCCT 60731 Query 20518 GGTCCGC-GA-----CTTGCAGAAGATCGATATGTGGTC----GCCCAAAATTAAGAATG 20567 || | || || |||| | | || | ||||||| ||| || ||||| Sbjct 60732 GG-CTGCTGAAGGATCTTGTCG-ACATGGGCTTGTGGTCCGATGCC----ATGAAGAACC 60785 Query 20568 AAAT--TGTCCGAGCCGGCGGGAGCGTCCAG-GCAT--TGGATATCCCCCAGAACCTCAA 20622 || | ||||| ||| ||| ||| ||| | |||||| | |||| Sbjct 60786 GTATCATCGCCGAG--AACGGTTCCGTTCAGAACATCCCTAACATCCCCGCCGAGGTCAA 60843 Query 20623 GGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGGCGGCCGA 20682 || | |||| |||||| ||||||||| | ||| | | | | | ||||| ||||| Sbjct 60844 GGCTCTGTACAAGACCGTCTGGGAAATCTCCCAGCGCACCGTTGTTCAGATGGCTGCCGA 60903 Query 20683 TCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATCCGAGCCT 20742 ||| || |||| ||| |||||||||||||| ||||| || |||| || | |||| | Sbjct 60904 TCGTGGTGCCTTCATTGACCAGTCCCAGTCCCTCAACATCCACATGAAGGACCCGACAAT 60963 Query 20743 GGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGGGCATGTA 20802 || ||| | | | |||||| | |||||| | || ||||||||||||||||| Sbjct 60964 GGGCAAGATCACCAGCATGCACTTCGCTGGCTGGAAGCTTGGTCTCAAGACGGGCATGTA 61023 Query 20803 CTATCTGCGGAC 20814 ||| ||||| || Sbjct 61024 CTACCTGCGTAC 61035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548512327917360