Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06-
15] 1,819 sequences; 35,034,269 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq1170 526 2e-144
>seq1170
Length=97779
Score = 526 bits (582), Expect = 2e-144
Identities = 1175/1749 (67%), Gaps = 45/1749 (3%)
Strand=Plus/Minus
Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249
|| |||| ||||||||||||||||||||||| |||||| || | |||||| ||
Sbjct 61035 GTACGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCAGCGAAGTGCATGCTG 60976
Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309
| | |||| ||| |||||| || |||| ||||||||| |||||||||||||| |||
Sbjct 60975 GTGATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTGAGGGACTGGGACTGGTCAATG 60916
Query 78310 TACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTC 78369
| ||||| || ||||| ||||| | | || | || | || ||||||| ||||
Sbjct 60915 AAGGCACCACGATCGGCAGCCATCTGAACAACGGTGCGCTGGGAGATTTCCCAGACGGTC 60856
Query 78370 CGGTAAATGGCCTTCAGCTCTTCCTGGATGTCCAGCGCT----TGTACGCTCCCACCGG- 78424
||| | ||||| | ||| | |||||| || | | || ||| ||||
Sbjct 60855 TTGTACAGAGCCTTGACCTCGGCGGGGATGTT-AGGGATGTTCTGAACGGA---ACCGTT 60800
Query 78425 CTCGCACA--ATTTCATTCTTAATTTGAGGGTTCCA---GCGATTGATCTTCTGAAGATC 78479
|||| | || ||||| || | | ||| || || || | ||||||
Sbjct 60799 CTCGGCGATGATACGGTTCTTCATGGCATCGGACCACAAGCCCATG-TCGAC--AAGATC 60743
Query 78480 CCGGACCAGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAGAT 78539
| | ||| |||| | | |||||||||||| || |||||| |||||||
Sbjct 60742 CTTCAGCAGCCAGGGGTTGACAACCTGGAACTCGCCGGCGAGAACACGGCGCTGGTAGAT 60683
Query 78540 GTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGT 78599
||||| ||||| |||||||| ||||||||| |||| |||||||| || ||||| ||
Sbjct 60682 GTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGGGAAGTGGAGGCAGT 60623
Query 78600 CGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACCTTTAG 78659
|||||||| || || || | | || |||| ||| ||| |||||| | |||| ||
Sbjct 60622 AGGCATGGGAGCAACAAGCAAACTGTTGCGAACACCGTGCTCCTTGATTTGCTCCTTCAG 60563
Query 78660 G------CCGTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGATACC 78713
| |||||| | ||| | | || ||||||||| |||||||||||
Sbjct 60562 AGAGTCCCAGTCCCAGAGGTCAGAGGGCTTGACATTCCACATGTCGTACTGAAGGATACC 60503
Query 78714 CTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCA 78773
|| ||| || || |||| | |||| ||| | ||||||||| |||| ||||
Sbjct 60502 CTGGGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTACCCTCCTCCCTGGCCAGTTGAAC 60443
Query 78774 TGACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGC 78833
||| | ||| || |||||||| | | ||| || || ||| ||||| ||||| ||
Sbjct 60442 GGACATGGTCAGAGCGGCGTGGTAGATGGTCTCAAAAATCTTCTTATTGAGATCGCGAGC 60383
Query 78834 CTTGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCC 78893
|| | ||||| | | || ||| | |||| |||| || || |||||||| ||
Sbjct 60382 CTCAGGAGACTCGAAAGGCATGCGGAGGGCGAGGAAGGCATCAGCAAGACCCTGGACACC 60323
Query 78894 GATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTCGGGTAAAAGTT 78953
| | |||| || ||||| ||||||||||| || || ||| | ||||| |||
Sbjct 60322 AAGACCGATGGGGCGGTGACGCATGTTGCTGTTGCGAGCCTCAGGAACGGGGTAGTGGTT 60263
Query 78954 CCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACAATTTGGC 79013
||| |||| ||||||||| || |||||| |||| ||||||| | ||
Sbjct 60262 GACATCAATGATCTTGTTCAGGTTGCGAACAACGACCTGAGTGACCTCGTGAAGCTTCTG 60203
Query 79014 GAAATCAAAATGATTTCCTTTGATG--AAAGTCGGTAGGCACAGC----GATGCCAGGTT 79067
|||||| || | | ||| | || | |||||||| || || |||| |||
Sbjct 60202 GAAATCGTAAACACCCTCATTGTAGTCAACGAAGGTAGGCAGGGCAAGAGAGGCCAAGTT 60143
Query 79068 GCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGA 79127
||| || || ||| || ||| | ||| || || || ||||| | || ||
Sbjct 60142 GCAGACAGCGACCTCATCGGGGGCGCAGTACTCAATAATCTCAGTGCAGAGGTTGGAGCT 60083
Query 79128 CTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACAT 79187
|||||| |||| |||||| ||||||||||| ||| ||| |||||||| |||
Sbjct 60082 GCGGATGGTTCCGAGGTTCTTTTGGTTGCTCTTGCGGTTCGCGGCATCCTTGTAAAGCAT 60023
Query 79188 GTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCCG 79247
| | || | ||||||||| |||| || ||| | | ||| ||| | | | |||||
Sbjct 60022 GAAGGGGTTGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTACCAAAGCTTCTGGGCCTT 59963
Query 79248 GACAACCTTCTTGTACCGACCCTGT-----GCGA-CGTACGTCCGGTACAACTCGTTGAA 79301
|| ||||| ||||||| ||| ||||| | |||||| | | ||
Sbjct 59962 GATGG---TCTTG---CGACCCTTGCCCTCGCGCTCGTACTTTTCGTACAAGGCCTCAAA 59909
Query 79302 AGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTC 79361
|||| || ||| || | |||||| |||||||||| |||||||| ||| ||| ||
Sbjct 59908 CTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGGCACATGAGGGTCCATTC 59849
Query 79362 CTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTC 79421
||| |||||| || ||| |||||| || || |||||||| ||||| ||| |||||
Sbjct 59848 GGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGGGCGAGGAAAAGGTC 59789
Query 79422 GCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTC 79481
||| ||| | |||||| | ||| |||||| |||| || | || || | || ||
Sbjct 59788 ACGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAACTCGAAGACATC 59729
Query 79482 GGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTT 79541
||||||||| ||||| || ||||||||||| | ||| |||||| ||| |||||||
Sbjct 59728 GGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCACCAGGACGCTTGTTGCCACCCTGGTC 59669
Query 79542 GACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCC 79601
|||||| || || ||||||||||| || || |||||||| | || ||||| | | |||
Sbjct 59668 GACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACGCCGTTAGAGGTGCC 59609
Query 79602 GTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAAT--GTTCGAGCAGTGGATTCCGATG 79659
||| || ||| || | || | || || || | | |||| || || || |||
Sbjct 59608 GTTGGTGCCGGCAATGTAGGAGCCAGTGGCACGGATACGGT-GAGC-GTTGAGGCCAATG 59551
Query 79660 CCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATC 79719
|| || | | ||||||||| ||||| |||||| || |||||||| ||||| ||
Sbjct 59550 CCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCCTCAATG 59491
Query 79720 GAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCG 79779
||||| |||||||| |||| |||||||| |||| ||| | ||||||||
Sbjct 59490 GAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAGGGGTACCGGCA 59431
Query 79780 TTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCC 79839
||||| || || || | ||||| ||||||||||| | ||| || | ||| |||||
Sbjct 59430 TTGAAAAGTGTGGGGGAGGCGTGTGTGAAGAACTTGCTGGACATGAGGTTGTAGGTCTCG 59371
Query 79840 TTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTGG 79899
|||||||| | |||||||| ||| ||||| ||||| ||||||| | || |||
Sbjct 59370 ATGACGCGCTCAACATCGTCGCCCCAGATACCGACTGCGACACGCATGATCATGTGCTGC 59311
Query 79900 GGCGTCTCG 79908
|| |||||
Sbjct 59310 GGTCTCTCG 59302
Score = 439 bits (486), Expect = 3e-118
Identities = 1166/1752 (67%), Gaps = 53/1752 (3%)
Strand=Plus/Plus
Query 19097 GAGACGCCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCG 19156
|||| || ||| || | ||||||| ||||| ||||| ||| |||||||| | |
Sbjct 59303 GAGAGACCGCAGCACATGATCATGCGTGTCGCAGTCGGTATCTGGGGCGACGATGTTGAG 59362
Query 19157 CGAGTCCGCGAGACATACGACCTGATGAGCCAG-AAGTTCTTCACGCACGCGACGCCGAC 19215
|| ||| |||||| ||| |||| ||| |||| ||||||||||| ||||| | || ||
Sbjct 59363 CGCGTCATCGAGACCTACAACCTCATGT-CCAGCAAGTTCTTCACACACGCCTCCCCCAC 59421
Query 19216 CCTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAA 19275
|||||||| |||||||| | ||| |||| || ||||| || | |||||
Sbjct 59422 ACTTTTCAATGCCGGTACCCCTCAGTGCCAGCTGTCTTCATGCTTCCTCGTCGACATGAA 59481
Query 19276 GGATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTG 19335
||| ||| ||||||||| |||||||| || |||||| ||||| |||||||||
Sbjct 59482 GGAAGACTCCATTGAGGGTATCTACGACACCCTCAAGACCTGCGCCATGATCTCCAAGAT 59541
Query 19336 GTCCGGGGGTATCGGGATCCACTGCTCGAA-TATCCGGTCGAGTGGTACACGAATCAATG 19394
| | || || || || || || |||| |||||| | | ||| | || |
Sbjct 59542 GGCTGGTGGCATTGGCCTCAAC-GCTCACCGTATCCGTGCCACTGGCTCCTACATTGCCG 59600
Query 19395 GGACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCA 19454
| || ||||| | |||| || | || ||||| || |||||||||||||| ||
Sbjct 59601 GCACCAACGGCACCTCTAACGGCGTCATTCCCATGCTTCGTGTCTTCAACAACACTGCTC 59660
Query 19455 GGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCAT 19514
| |||||| ||||||| ||| ||| || || | |||||||||||||| ||||| |
Sbjct 59661 GCTACGTCGACCAGGGTGGCAACAAGCGTCCTGGTGCCTTCGCCATCTACCTTGAGCCCT 59720
Query 19515 GGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGC 19574
||||||| || ||| | || ||| | || ||||| |||||| || | |||||| | |
Sbjct 59721 GGCACGCCGATGTCTTCGAGTTCATGGACTTGCGCAAGAACCACGGCAAGGAGGAGGTCC 59780
Query 19575 GCTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGA 19634
| || ||||| ||| ||| | ||||| || || || |||||| ||| || ||||
Sbjct 59781 GTGCCCGTGACCTTTTCCTCGCCCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAGA 59840
Query 19635 AGGACGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACG 19694
|| ||| |||||| ||| |||||||| |||| ||||| ||||| | ||| |||||
Sbjct 59841 AGAACGCCGAATGGACCCTCATGTGCCCCAACGAGTGCCCCGGCCTGGCTGACTGCTACG 59900
Query 19695 GCGAGGCGTTCAATGAGTTGTACCGGACTTACGTAGC-CCAGGGC-CGGTTCAAGAAGGT 19752
|||||| ||| | | |||||| | |||| ||| | ||||| || || |||
Sbjct 59901 GCGAGGAGTTTGAGGCCTTGTACGAAAAGTACG-AGCGCGAGGGCAAGGGTC-GCAAGAC 59958
Query 19753 GGTCCGGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACC 19812
|| ||||| | | | ||| || | ||||| | ||| |||||||||| ||
Sbjct 59959 CATCAAGGCCCAGAAGCTTTGGTACGCCATCCTCGAGGCTCAGACTGAGACCGGCAACCC 60018
Query 19813 GTACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGAT 19872
| |||| |||||||| ||||||||| |||| || || |||||| |||| | ||
Sbjct 60019 CTTCATGCTTTACAAGGATGCCGCGAACCGCAAGAGCAACCAAAAGAACCTCGGAACCAT 60078
Query 19873 CAAGTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGT 19932
| |||||||| || ||||| || || ||| | | || || ||| || ||
Sbjct 60079 CCGCAGCTCCAACCTCTGCACTGAGATTATTGAGTACTGCGCCCCCGATGAGGTCGCTGT 60138
Query 19933 GTGTAATCTGGCGTCCCTGTGCCTGCCGACTTTCGT------CAAGGCCTCCTCCTTCGA 19986
|| || |||| || || |||||| || ||||| ||| | | |||
Sbjct 60139 CTGCAACTTGGCCTCTCTTGCCCTGCCTACCTTCGTTGACTACAATGAGGGTGTTTACGA 60198
Query 19987 CTTTGCCAAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGA 20046
|| || | ||||||| || | |||||| || || ||||| |||| ||
Sbjct 60199 TTTCCAGAAGCTTCACGAGGTCACTCAGGTCGTTGTTCGCAACCTGAACAAGATCATTGA 60258
Query 20047 TCGGAACTTTTACCCGACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGC 20106
| ||| ||||| | ||| ||||| || ||||| ||||| || ||||
Sbjct 60259 TGTCAACCACTACCCCGTTCCTGAGGCTCGCAACAGCAACATGCGTCACCGCCCCATCGG 60318
Query 20107 GATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATCC 20166
| || |||||||| || || || | ||| | ||| || | | ||||| |||
Sbjct 60319 TCTTGGTGTCCAGGGTCTTGCTGATGCCTTCCTCGCCCTCCGCATGCCTTTCGAGTCTCC 60378
Query 20167 CAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCT--CCTG 20224
|||| ||||| ||||| ||| || || ||| || | |||||||| || || ||
Sbjct 60379 TGAGGCTCGCGATCTCAATAAGAAGATTTTTGAGACCATCTACCACGCCGCTCTGACCAT 60438
Query 20225 GAATCGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCG 20284
| ||| | |||| |||| ||||| || | ||| |||| | |||| || ||
Sbjct 60439 G-TCCGTTC-AACTGGCCAGGGAGGAGGGTACCTACTCCACGTACGAGGGCTCCCCTATC 60496
Query 20285 TCCGAGGGTATCCTCCAGCCGGACATGTGGGGCGTCA------CTGA-GAATGAGTTTTG 20337
||| |||||||||| ||| ||||||||| |||| |||| || | | |
Sbjct 60497 TCCCAGGGTATCCTTCAGTACGACATGTGGAATGTCAAGCCCTCTGACCTCTGGGACTGG 60556
Query 20338 GAGCGCCCTCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCC 20397
|| | | || |||| | |||||| ||||| |||||||| ||||| || || ||
Sbjct 60557 GA-CTCTCTGAAGGAGCAAATCAAGGAGCACGGTGTTCGCAACAGTTTGCTTGTTGCTCC 60615
Query 20398 CATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACAC 20457
|||||| || ||||| || |||||||| |||| ||||||||| |||||||| |||||
Sbjct 60616 CATGCCTACTGCCTCCACTTCCCAGATCTTGGGCAACAACGAGTGCTTCGAGCCCTACAC 60675
Query 20458 GACCAACATCTACTTGCGTCGTACACTGGCCGGTGAGTTCGTCATGGTAAACAAGCACCT 20517
||||||||||| ||| ||| || ||||| |||||| || ||| ||| | |||
Sbjct 60676 CTCCAACATCTACCAGCGCCGTGTTCTCGCCGGCGAGTTC--CA-GGTTGTCAA-CCCCT 60731
Query 20518 GGTCCGC-GA-----CTTGCAGAAGATCGATATGTGGTC----GCCCAAAATTAAGAATG 20567
|| | || || |||| | | || | ||||||| ||| || |||||
Sbjct 60732 GG-CTGCTGAAGGATCTTGTCG-ACATGGGCTTGTGGTCCGATGCC----ATGAAGAACC 60785
Query 20568 AAAT--TGTCCGAGCCGGCGGGAGCGTCCAG-GCAT--TGGATATCCCCCAGAACCTCAA 20622
|| | ||||| ||| ||| ||| ||| | |||||| | ||||
Sbjct 60786 GTATCATCGCCGAG--AACGGTTCCGTTCAGAACATCCCTAACATCCCCGCCGAGGTCAA 60843
Query 20623 GGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGGCGGCCGA 20682
|| | |||| |||||| ||||||||| | ||| | | | | | ||||| |||||
Sbjct 60844 GGCTCTGTACAAGACCGTCTGGGAAATCTCCCAGCGCACCGTTGTTCAGATGGCTGCCGA 60903
Query 20683 TCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATCCGAGCCT 20742
||| || |||| ||| |||||||||||||| ||||| || |||| || | |||| |
Sbjct 60904 TCGTGGTGCCTTCATTGACCAGTCCCAGTCCCTCAACATCCACATGAAGGACCCGACAAT 60963
Query 20743 GGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGGGCATGTA 20802
|| ||| | | | |||||| | |||||| | || |||||||||||||||||
Sbjct 60964 GGGCAAGATCACCAGCATGCACTTCGCTGGCTGGAAGCTTGGTCTCAAGACGGGCATGTA 61023
Query 20803 CTATCTGCGGAC 20814
||| ||||| ||
Sbjct 61024 CTACCTGCGTAC 61035
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548512327917360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |