Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06-
15] 1,819 sequences; 35,034,269 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq1170 257 2e-63
seq1761 102 9e-17
>seq1170
Length=97779
Score = 257 bits (284), Expect = 2e-63
Identities = 518/758 (68%), Gaps = 14/758 (2%)
Strand=Plus/Plus
Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252
||||||| ||||| | |||||| || ||||| ||| ||| ||||| |||
Sbjct 59322 TCATGCGTGTCGCAGTCGGTATCTGGGGCGACGATGTTGAGCGCGTCATCGAGACCTACA 59381
Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312
|| | ||| | |||| ||| || |||||| | || || || ||||| || |||||
Sbjct 59382 ACCTCATGTCCAGCAAGTTCTTCACACACGCCTCCCCCACACTTTTCAATGCCGGTACCC 59441
Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372
||| ||| |||| |||||||| || | |||||||| ||||| || || || |
Sbjct 59442 CTCAGTGCCAGCTGTCTTCATGCTTCCTCGTCGACATGAAGGAAGACTCCATTGAGGGTA 59501
Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432
||||||| || |||||| || ||| ||||||||| | | ||||| || || ||
Sbjct 59502 TCTACGACACCCTCAAGACCTGCGCCATGATCTCCAAGATGGCTGGTGGCATTGGCCTCA 59561
Query 53433 ACTGCTCGAACGT--CCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490
|| |||| | ||| |||||| | ||| | || || || |||||| | | |
Sbjct 59562 AC-GCTC-ACCGTATCCGTGCCACTGGCTCCTACATTGCCGGCACCAACGGCACCTCTAA 59619
Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550
|| || | || ||||| || |||||||||||||| || || |||||| ||||||||||
Sbjct 59620 CGGCGTCATTCCCATGCTTCGTGTCTTCAACAACACTGCTCGCTACGTCGACCAGGGTGG 59679
Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610
||||| || | |||||||||||||| ||||| ||||||||||| | | ||
Sbjct 59680 CAACAAGCGTCCTGGTGCCTTCGCCATCTACCTTGAGCCCTGGCACGCCGATGTCTTCGA 59739
Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTAC 53670
||| | || |||| ||| || || | || ||| | || ||||||||| ||
Sbjct 59740 GTTCATGGACTTGCGCAAGAACCACGGCAAGGAGGAGGTCCGTGCCCGTGACCTTTTCCT 59799
Query 53671 AGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCT 53730
|| || ||||| || || || |||||| | | || |||||| ||| || ||| |||
Sbjct 59800 CGCCCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAGAAGAACGCCGAATGGACCCT 59859
Query 53731 GATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGTCTACGGTGAGGAGTTTAACGAGA 53789
|||||||| ||||||||||||||||| | | || |||||| ||||||||| | |
Sbjct 59860 CATGTGCCCCAACGAGTGCCCCGGCCTGGCTGACTG-CTACGGCGAGGAGTTTGAGGCCT 59918
Query 53790 TGTATCGGACGTACGCAGTTC-AGGGC---CGCTACAAGAAGAAGGTCAAGGCGCGTGAG 53845
|||| | ||||| || | ||||| | ||||| | ||||||| | ||
Sbjct 59919 TGTACGAAAAGTACG-AGCGCGAGGGCAAGGGTCGCAAGACCA---TCAAGGCCCAGAAG 59974
Query 53846 GTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAG 53905
| ||| | || |||||| || ||| ||||| || | || | |||| ||||||
Sbjct 59975 CTTTGGTACGCCATCCTCGAGGCTCAGACTGAGACCGGCAACCCCTTCATGCTTTACAAG 60034
Query 53906 GATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943
||| | | ||| ||||||||||| |||||| ||||
Sbjct 60035 GATGCCGCGAACCGCAAGAGCAACCAAAAGAACCTCGG 60072
Score = 107 bits (118), Expect = 2e-18
Identities = 291/438 (66%), Gaps = 13/438 (3%)
Strand=Plus/Plus
Query 55494 TGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGT 55553
|||| || || || ||||| || || || || | |||||| |||||||||||||| |
Sbjct 60603 TGCTTGTTGCTCCCATGCCTACTGCCTCCACTTCCCAGATCTTGGGCAACAACGAGTGCT 60662
Query 55554 TCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGA 55613
||||||| ||||| |||||||||||| |||||| || || || ||||| |
Sbjct 60663 TCGAGCCCTACACCTCCAACATCTACCAGCGCCGTGTTCTCGCCGGCGAGTTCCAGGTTG 60722
Query 55614 TCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAG--ATCAA 55671
||||| || | ||||| || | || | |||| ||| | || ||
Sbjct 60723 TCAACCCCTGGCTGCTGAAGGATCTTGTCGACATGGGCTTGTGGT--CCGATGCCATGAA 60780
Query 55672 GA--CGGATATTGTGCG-GAACGGGGGGTCCGTCCAGAA--TCTGGAGATTCCTCTGCGT 55726
|| || || | || |||||| ||||| ||||| || | ||| | ||
Sbjct 60781 GAACCGTATCATCGCCGAGAACGGT---TCCGTTCAGAACATCCCTAACATCCCCGCCGA 60837
Query 55727 C-TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAG 55785
|||||| | ||| ||| || ||||| || | ||| | | || | |||
Sbjct 60838 GGTCAAGGCTCTGTACAAGACCGTCTGGGAAATCTCCCAGCGCACCGTTGTTCAGATGGC 60897
Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845
||| ||||||||||| | ||| |||||||||||||| || |||||| |||| || | ||
Sbjct 60898 TGCCGATCGTGGTGCCTTCATTGACCAGTCCCAGTCCCTCAACATCCACATGAAGGACCC 60957
Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905
|| ||| |||| | | | |||||||| || |||||| || |||||||||||
Sbjct 60958 GACAATGGGCAAGATCACCAGCATGCACTTCGCTGGCTGGAAGCTTGGTCTCAAGACGGG 61017
Query 55906 TATGTACTATCTGCGGAC 55923
|||||||| ||||| ||
Sbjct 61018 CATGTACTACCTGCGTAC 61035
>seq1761
Length=70006
Score = 102 bits (112), Expect = 9e-17
Identities = 277/422 (66%), Gaps = 4/422 (1%)
Strand=Plus/Plus
Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211
||||| || ||||| || ||||| || |||||||| || | || || |||||| |
Sbjct 20729 CCAGTGCCAATACCGTCGGCACCGTTGCAGAGAATCATGGGAATGATTGGCGCGTAGACC 20788
Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271
| ||||| | | | ||||| || | ||| ||| | | ||| |||
Sbjct 20789 TTGGGCTCGATCCTCTTTCCGTCCTCATACTGGGACTCGAGATTGGGCTCGTCGAGGGGA 20848
Query 117272 TCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCA 117331
||| || ||| | | | |||| || | ||| ||||||||||| ||| ||||||
Sbjct 20849 GAGAAGATCTTCCTAGCAAATGGTGACAGTCTCGTGTGAATGTAACGAGGGCTGGCAGCA 20908
Query 117332 TCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTG 117391
|| ||||| ||||| || | |||||| | ||| ||||||| | ||| | ||||
Sbjct 20909 TCTGAACCACCGGCAAGTCGAGAACCGAAGTTTCCGGAGGGCTCCAGGCAGTTGATGTTG 20968
Query 117392 TTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCA 117451
|| | ||| |||||| | || || | | || || || || | | ||||||
Sbjct 20969 TTTGAGCCTACAAAGGTCTGCGCTAGACCAATGATGGTCTGCTGAAGAGACACTTCACCA 21028
Query 117452 TGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACC--TTCATGTCTG 117509
||||| || | |||||||| | | ||| || |||| | | | ||| || || | ||
Sbjct 21029 TGGTGGTAGGATGTCTGCTCAGAAATGTAACCGGCCAATTCAACGACCTTTTGATCTTTG 21088
Query 117510 ACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCAT 117569
|| || |||| |||||| ||||| || || || || || |||| ||||||| ||||
Sbjct 21089 AC--CAAGTTCCTCTTGAAACAGGCGTACATGACTTTACGTTGACCAGGCTTCAATCCAT 21146
Query 117570 CC 117571
||
Sbjct 21147 CC 21148
Score = 87.8 bits (96), Expect = 2e-12
Identities = 90/115 (78%), Gaps = 2/115 (2%)
Strand=Plus/Plus
Query 119074 ACTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGC-GCTGCT 119132
|||||| ||||| |||||||||||||| ||||| |||||||| | || | || ||
Sbjct 22774 ACTGAAGACGTTACAAAGCTTGGCACCGTAACCGTTGCGACCACC-GACAGTCTTCTTCT 22832
Query 119133 CCTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGAT 119187
| || |||| ||||||||| | ||||| ||||| |||||||| | |||||| ||
Sbjct 22833 CGTCATCGTCGTAGTTGGAACCAGTCAAGAGGTGACCAAAGATCATCTCGGGAAT 22887
Score = 84.2 bits (92), Expect = 2e-11
Identities = 143/202 (71%), Gaps = 14/202 (7%)
Strand=Plus/Plus
Query 153768 CTTGCTCATGTTGTCGGTCCAAGTTTGCATGTAGATCTTCTTACCGTCACT--AATTTTG 153825
||||||||||||||||||||| ||| |||| ||| ||| |||| | | | |||
Sbjct 22696 CTTGCTCATGTTGTCGGTCCAGACCTGCTTGTA--TCT-CTTTCCGTTGTTGGAGTCTTG 22752
Query 153826 ATATTAAATTTTGAACTG-------AAAACGTTAGCCAACTTGGCACCGTAACCATTGCG 153878
||| || ||||||| || |||||| | ||||||||||||||| |||||
Sbjct 22753 GCATTCAAGAGTGAACTGCTCACTGAAGACGTTACAAAGCTTGGCACCGTAACCGTTGCG 22812
Query 153879 ACCGCCCGTCACGCGT-TGTTCCTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAA 153937
||| ||| || | | | || || |||| ||||||||| | ||||| ||||| ||||
Sbjct 22813 ACC-ACCGACAGTCTTCTTCTCGTCATCGTCGTAGTTGGAACCAGTCAAGAGGTGACCAA 22871
Query 153938 AGATGAGTTCAGGGATCCAGAT 153959
|||| | || || || ||||
Sbjct 22872 AGATCATCTCGGGAATGTAGAT 22893
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547203557676200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |