Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06- 15] 1,819 sequences; 35,034,269 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1170 257 2e-63 seq1761 102 9e-17 >seq1170 Length=97779 Score = 257 bits (284), Expect = 2e-63 Identities = 518/758 (68%), Gaps = 14/758 (2%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| ||||| | |||||| || ||||| ||| ||| ||||| ||| Sbjct 59322 TCATGCGTGTCGCAGTCGGTATCTGGGGCGACGATGTTGAGCGCGTCATCGAGACCTACA 59381 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 || | ||| | |||| ||| || |||||| | || || || ||||| || ||||| Sbjct 59382 ACCTCATGTCCAGCAAGTTCTTCACACACGCCTCCCCCACACTTTTCAATGCCGGTACCC 59441 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 ||| ||| |||| |||||||| || | |||||||| ||||| || || || | Sbjct 59442 CTCAGTGCCAGCTGTCTTCATGCTTCCTCGTCGACATGAAGGAAGACTCCATTGAGGGTA 59501 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 ||||||| || |||||| || ||| ||||||||| | | ||||| || || || Sbjct 59502 TCTACGACACCCTCAAGACCTGCGCCATGATCTCCAAGATGGCTGGTGGCATTGGCCTCA 59561 Query 53433 ACTGCTCGAACGT--CCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490 || |||| | ||| |||||| | ||| | || || || |||||| | | | Sbjct 59562 AC-GCTC-ACCGTATCCGTGCCACTGGCTCCTACATTGCCGGCACCAACGGCACCTCTAA 59619 Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 || || | || ||||| || |||||||||||||| || || |||||| |||||||||| Sbjct 59620 CGGCGTCATTCCCATGCTTCGTGTCTTCAACAACACTGCTCGCTACGTCGACCAGGGTGG 59679 Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610 ||||| || | |||||||||||||| ||||| ||||||||||| | | || Sbjct 59680 CAACAAGCGTCCTGGTGCCTTCGCCATCTACCTTGAGCCCTGGCACGCCGATGTCTTCGA 59739 Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTAC 53670 ||| | || |||| ||| || || | || ||| | || ||||||||| || Sbjct 59740 GTTCATGGACTTGCGCAAGAACCACGGCAAGGAGGAGGTCCGTGCCCGTGACCTTTTCCT 59799 Query 53671 AGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCT 53730 || || ||||| || || || |||||| | | || |||||| ||| || ||| ||| Sbjct 59800 CGCCCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAGAAGAACGCCGAATGGACCCT 59859 Query 53731 GATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGTCTACGGTGAGGAGTTTAACGAGA 53789 |||||||| ||||||||||||||||| | | || |||||| ||||||||| | | Sbjct 59860 CATGTGCCCCAACGAGTGCCCCGGCCTGGCTGACTG-CTACGGCGAGGAGTTTGAGGCCT 59918 Query 53790 TGTATCGGACGTACGCAGTTC-AGGGC---CGCTACAAGAAGAAGGTCAAGGCGCGTGAG 53845 |||| | ||||| || | ||||| | ||||| | ||||||| | || Sbjct 59919 TGTACGAAAAGTACG-AGCGCGAGGGCAAGGGTCGCAAGACCA---TCAAGGCCCAGAAG 59974 Query 53846 GTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAG 53905 | ||| | || |||||| || ||| ||||| || | || | |||| |||||| Sbjct 59975 CTTTGGTACGCCATCCTCGAGGCTCAGACTGAGACCGGCAACCCCTTCATGCTTTACAAG 60034 Query 53906 GATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943 ||| | | ||| ||||||||||| |||||| |||| Sbjct 60035 GATGCCGCGAACCGCAAGAGCAACCAAAAGAACCTCGG 60072 Score = 107 bits (118), Expect = 2e-18 Identities = 291/438 (66%), Gaps = 13/438 (3%) Strand=Plus/Plus Query 55494 TGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGT 55553 |||| || || || ||||| || || || || | |||||| |||||||||||||| | Sbjct 60603 TGCTTGTTGCTCCCATGCCTACTGCCTCCACTTCCCAGATCTTGGGCAACAACGAGTGCT 60662 Query 55554 TCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGA 55613 ||||||| ||||| |||||||||||| |||||| || || || ||||| | Sbjct 60663 TCGAGCCCTACACCTCCAACATCTACCAGCGCCGTGTTCTCGCCGGCGAGTTCCAGGTTG 60722 Query 55614 TCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAG--ATCAA 55671 ||||| || | ||||| || | || | |||| ||| | || || Sbjct 60723 TCAACCCCTGGCTGCTGAAGGATCTTGTCGACATGGGCTTGTGGT--CCGATGCCATGAA 60780 Query 55672 GA--CGGATATTGTGCG-GAACGGGGGGTCCGTCCAGAA--TCTGGAGATTCCTCTGCGT 55726 || || || | || |||||| ||||| ||||| || | ||| | || Sbjct 60781 GAACCGTATCATCGCCGAGAACGGT---TCCGTTCAGAACATCCCTAACATCCCCGCCGA 60837 Query 55727 C-TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAG 55785 |||||| | ||| ||| || ||||| || | ||| | | || | ||| Sbjct 60838 GGTCAAGGCTCTGTACAAGACCGTCTGGGAAATCTCCCAGCGCACCGTTGTTCAGATGGC 60897 Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845 ||| ||||||||||| | ||| |||||||||||||| || |||||| |||| || | || Sbjct 60898 TGCCGATCGTGGTGCCTTCATTGACCAGTCCCAGTCCCTCAACATCCACATGAAGGACCC 60957 Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905 || ||| |||| | | | |||||||| || |||||| || ||||||||||| Sbjct 60958 GACAATGGGCAAGATCACCAGCATGCACTTCGCTGGCTGGAAGCTTGGTCTCAAGACGGG 61017 Query 55906 TATGTACTATCTGCGGAC 55923 |||||||| ||||| || Sbjct 61018 CATGTACTACCTGCGTAC 61035 >seq1761 Length=70006 Score = 102 bits (112), Expect = 9e-17 Identities = 277/422 (66%), Gaps = 4/422 (1%) Strand=Plus/Plus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 ||||| || ||||| || ||||| || |||||||| || | || || |||||| | Sbjct 20729 CCAGTGCCAATACCGTCGGCACCGTTGCAGAGAATCATGGGAATGATTGGCGCGTAGACC 20788 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271 | ||||| | | | ||||| || | ||| ||| | | ||| ||| Sbjct 20789 TTGGGCTCGATCCTCTTTCCGTCCTCATACTGGGACTCGAGATTGGGCTCGTCGAGGGGA 20848 Query 117272 TCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCA 117331 ||| || ||| | | | |||| || | ||| ||||||||||| ||| |||||| Sbjct 20849 GAGAAGATCTTCCTAGCAAATGGTGACAGTCTCGTGTGAATGTAACGAGGGCTGGCAGCA 20908 Query 117332 TCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTG 117391 || ||||| ||||| || | |||||| | ||| ||||||| | ||| | |||| Sbjct 20909 TCTGAACCACCGGCAAGTCGAGAACCGAAGTTTCCGGAGGGCTCCAGGCAGTTGATGTTG 20968 Query 117392 TTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCA 117451 || | ||| |||||| | || || | | || || || || | | |||||| Sbjct 20969 TTTGAGCCTACAAAGGTCTGCGCTAGACCAATGATGGTCTGCTGAAGAGACACTTCACCA 21028 Query 117452 TGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACC--TTCATGTCTG 117509 ||||| || | |||||||| | | ||| || |||| | | | ||| || || | || Sbjct 21029 TGGTGGTAGGATGTCTGCTCAGAAATGTAACCGGCCAATTCAACGACCTTTTGATCTTTG 21088 Query 117510 ACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCAT 117569 || || |||| |||||| ||||| || || || || || |||| ||||||| |||| Sbjct 21089 AC--CAAGTTCCTCTTGAAACAGGCGTACATGACTTTACGTTGACCAGGCTTCAATCCAT 21146 Query 117570 CC 117571 || Sbjct 21147 CC 21148 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/115 (78%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 119074 ACTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGC-GCTGCT 119132 |||||| ||||| |||||||||||||| ||||| |||||||| | || | || || Sbjct 22774 ACTGAAGACGTTACAAAGCTTGGCACCGTAACCGTTGCGACCACC-GACAGTCTTCTTCT 22832 Query 119133 CCTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGAT 119187 | || |||| ||||||||| | ||||| ||||| |||||||| | |||||| || Sbjct 22833 CGTCATCGTCGTAGTTGGAACCAGTCAAGAGGTGACCAAAGATCATCTCGGGAAT 22887 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/202 (71%), Gaps = 14/202 (7%) Strand=Plus/Plus Query 153768 CTTGCTCATGTTGTCGGTCCAAGTTTGCATGTAGATCTTCTTACCGTCACT--AATTTTG 153825 ||||||||||||||||||||| ||| |||| ||| ||| |||| | | | ||| Sbjct 22696 CTTGCTCATGTTGTCGGTCCAGACCTGCTTGTA--TCT-CTTTCCGTTGTTGGAGTCTTG 22752 Query 153826 ATATTAAATTTTGAACTG-------AAAACGTTAGCCAACTTGGCACCGTAACCATTGCG 153878 ||| || ||||||| || |||||| | ||||||||||||||| ||||| Sbjct 22753 GCATTCAAGAGTGAACTGCTCACTGAAGACGTTACAAAGCTTGGCACCGTAACCGTTGCG 22812 Query 153879 ACCGCCCGTCACGCGT-TGTTCCTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAA 153937 ||| ||| || | | | || || |||| ||||||||| | ||||| ||||| |||| Sbjct 22813 ACC-ACCGACAGTCTTCTTCTCGTCATCGTCGTAGTTGGAACCAGTCAAGAGGTGACCAA 22871 Query 153938 AGATGAGTTCAGGGATCCAGAT 153959 |||| | || || || |||| Sbjct 22872 AGATCATCTCGGGAATGTAGAT 22893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547203557676200