Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06- 15] 1,819 sequences; 35,034,269 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1170 291 9e-74 seq866 185 1e-41 seq766 114 1e-20 >seq1170 Length=97779 Score = 291 bits (322), Expect = 9e-74 Identities = 1200/1872 (64%), Gaps = 84/1872 (4%) Strand=Plus/Minus Query 80031 TGCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTG 80090 |||| | || ||||| |||||||||||||||||||| || ||||||||| | ||| Sbjct 61042 TGCCTGAGTACGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCAGCGAAGTG 60983 Query 80091 CATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTG 80150 ||| ||| ||| | | ||| |||| || |||| |||||| || ||||| ||||| Sbjct 60982 CATGCTGGTGATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTGAGGGACTGGGACTG 60923 Query 80151 ACAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCA 80210 ||||| || |||||||| || ||||| | || || | || | |||||||| Sbjct 60922 GTCAATGAAGGCACCACGATCGGCAGCCATCTGAACAACGGTGCGCTGGGAGATTTCCCA 60863 Query 80211 TACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCC 80267 || || |||| |||| | ||| | || |||| | | | | | | Sbjct 60862 GACGGTCTTGTACAGAGCCTTG---ACCTCGGCGGGGATGTTAGGGATGTTCTGAACGGA 60806 Query 80268 ACCGTCCTTTACAATTTGA---TTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAG 80324 ||||| || | || | || |||| || | ||| | || | | | || Sbjct 60805 ACCGTTCTCGGCGATGATACGGTTCTTCATGGCATCGGACCACAAGCCCATGTCGACAAG 60746 Query 80325 ATCTTTCACAAG---GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAG 80381 ||| |||| || | | ||| || | || |||| || ||||| || ||| | Sbjct 60745 ATCCTTCAGCAGCCAGGGGTTGACAACCTGGA---ACTCGCCGGCGAGAACACGGCGCTG 60689 Query 80382 ATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCT 80441 || | ||| | ||||| ||||| || ||||||||| || | |||||| | ||| Sbjct 60688 GTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGGGAAGTGGA 60629 Query 80442 CGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTC 80501 || || ||||| || | || | || || || | ||||||| |||||| | ||| Sbjct 60628 GGCAGTAGGCATGGGAGCAACAAGCAAACTGTTGCGAACACCGTGCTCCTTGATTTGCTC 60569 Query 80502 GCGCAAA---TCTGA---CCAAAAATCAACCCCAACGCTGTGACC--CCACATGTCGTGC 80553 || | || | ||| | ||| | ||| |||| ||||||||||| | Sbjct 60568 CTTCAGAGAGTCCCAGTCCCAGAGGTCAG----AGGGCT-TGACATTCCACATGTCGTAC 60514 Query 80554 TGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTG 80613 || | ||| |||| || || || ||| || |||| ||| | |||||| | || Sbjct 60513 TGAAGGATACCCTGGGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTACCCTCCTCCCTG 60454 Query 80614 GCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTC 80673 ||||| | | ||| | || || ||||| || ||| |||||| | ||| || Sbjct 60453 GCCAGTTGAACGGACATGGTCAGAGCGGCGTGGTAGATGGTCTCAAAAATCTTCTTATTG 60394 Query 80674 ACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGG 80733 | | |||| |||| || ||||| | || || | | ||| | ||||| || Sbjct 60393 AGATCGCGAGCCTCAGGAGACTCGAAAGGCATGCGGAGGGCGAGGAAGGCATCAGCAAGA 60334 Query 80734 CCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCG-GCCTCCGGAAT 80792 ||||| || || | |||| |||||||| ||| |||| | | || ||||| |||| Sbjct 60333 CCCTGGACACCAAGACCGATGGGGCGGTGACGCATGTT-GCTGTTGCGAGCCTCAGGAAC 60275 Query 80793 TGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATC 80852 ||||| ||| ||| |||| |||||||||||| ||| ||| | || || || Sbjct 60274 GGGGTAGTGGTTGACATCAATGATCTTGTTCAGGTTGCGAACAACGACCTGAGTGACCTC 60215 Query 80853 ATGAAGTTTCTGAAAGTCGAATTGGTTCCCCTTC------ACAAATGCCGGAAGGCTCAG 80906 ||||| ||||| || ||| | | | || || || | || ||| || Sbjct 60214 GTGAAGCTTCTGGAAATCGTAAACACCCTCATTGTAGTCAACGAAGGTAGGCAGGGCAAG 60155 Query 80907 GGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCA 80966 || |||| ||||| || || ||||| || | | |||| | || || ||||| Sbjct 60154 AGAGGCCAAGTTGCAGACAGCGACCTCATCGGGGGCGCAGTACTCAATAATCTCAGTGCA 60095 Query 80967 CAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTC 81026 | || || || || || ||||| || ||||| |||| ||| || || Sbjct 60094 GAGGTTGGAGCTGCGGATGGTTCCGAGGTTCTTTTGGTTGCTCTTGCGGTTCGCGGCATC 60035 Query 81027 CTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAAT 81086 |||||| |||| | ||| | |||||||| ||| | || ||||||||||| ||||| Sbjct 60034 CTTGTAAAGCATGAAGGGGTTGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTACCAAAG 59975 Query 81087 CTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCTTC 81146 || | ||||||| |||||| ||||| ||| | | ||||| |||| | Sbjct 59974 CTTCTGGGCCTTGATGGTCTTGCGACCCTTGCCCTCGCGCTCGTACTTTTCGTACAAGGC 59915 Query 81147 GTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGT 81205 || |||| | |||| | ||| ||| ||| | ||||||||||| |||||||| ||| Sbjct 59914 CTCAAACTCCTCGCCGTAGCAGT-CAGCCAGGCCGGGGCACTCGTTGGGGCACATGAGGG 59856 Query 81206 GCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGA 81265 ||| |||| || ||||| || ||||||||| || ||||||||||||||| || Sbjct 59855 TCCATTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGGGCGAGGA 59796 Query 81266 ACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCA 81325 | ||||| ||| || ||||||| | || ||||| |||||| || | || || | Sbjct 59795 AAAGGTCACGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAACTCGA 59736 Query 81326 TGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC-----CCCTTGCGACGGC 81379 || || || ||||| ||||| || || | ||||| | || | |||| || Sbjct 59735 AGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCACCAGGACGCTTG---TTGC 59679 Query 81380 CACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCAT 81439 ||||||||| |||||| || ||||| ||| || ||||| | ||| || |||| || | Sbjct 59678 CACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACGCCGT 59619 Query 81440 CTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCG--CACCTTGCTGATTGA 81497 || ||||| || || | || || || |||| || || || ||| Sbjct 59618 TAGAGGTGCCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCACGGATACGGTGAGCGTTG- 59560 Query 81498 AAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAAT 81557 || || |||||||| | | ||| || ||| || || || | ||| || || || Sbjct 59559 -AGGCCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGAT 59501 Query 81558 TCCCTCGATGCTATCTTTTTTCATGTC-------AAGCAAGAA-ACAGCTTGACATCTGA 81609 ||||| ||| |||| |||||||| ||||| ||| ||||| || || |||| Sbjct 59500 ACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGC-TGGCA-CTGA 59443 Query 81610 GGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGAC 81669 ||| | ||||||||||| ||||| |||| ||||| |||| | | | ||| Sbjct 59442 GGG------GTACCGGCATTGAAAAGTGTGGGGGAGGCGTGTGTGAAGAACTTGCTGGAC 59389 Query 81670 ATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACA 81729 || |||| ||||| || ||||||| || |||||| || ||||||| || ||| Sbjct 59388 ATGAGGTTGTAGGTCTCGATGACGCGCTCAACATCGTCGCCCCAGATACCGACTGCGACA 59329 Query 81730 CGCATAAACATGTACTGGGGCGTCTCG-----CCTGC----------GTTCAGGTA-CAT 81773 ||||| | ||||| ||| || ||||| | ||| | |||||| || Sbjct 59328 CGCATGATCATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCGAGCTTGAGCAGGTATGAT 59269 Query 81774 CTTCTGCAAAGTCTTGATGCCGAAGTAACCGAACCCGTAGTCGCGTTCGCTGTCGATCAC 81833 | ||| || |||||||| ||||||||| | | | ||||||| ||| | |||| | Sbjct 59268 C-TCTCCAGAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACGATGGC 59210 Query 81834 AGCATCTAGCTC 81845 || |||||||| Sbjct 59209 AGAGTCTAGCTC 59198 >seq866 Length=7889 Score = 185 bits (204), Expect = 1e-41 Identities = 181/231 (78%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||| | || |||||||| ||||| | ||||| |||||| Sbjct 2873 ATGCAGATCTTCGTGAAGACGTTGACTGGCAAGACGATTACCTTGGAGGTCGAGTCATCA 2932 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || ||||| |||| |||||||| |||||||| || ||||| |||||| Sbjct 2933 GACACGATTGACAACGTGAAGTCTAAGATTCAGGATAAGGAGGGTATCCCTCCCGACCAG 2992 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||||| || || ||||| ||||| | || |||| ||| ||||| ||| ||||| || Sbjct 2993 CAGCGTCTTATCTTCGCTGGAAAGCAGTTGGAAGATGGTCGCACCCTGAGC-GACTACAA 3051 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||||||||| |||||||| ||| | |||||||| || || || Sbjct 3052 CATCCAGAAGGAATCCACCCTTCATCTCGTCCTCCGTCTTCGTGGCGGCCA 3102 Score = 181 bits (200), Expect = 1e-40 Identities = 169/215 (79%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || ||||||||||| || || |||||||| ||||| ||||| ||| | Sbjct 2429 GTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCTTCTGATACCATCGAC 2488 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || | ||| | || ||||||||||||||||| |||||||| |||||||||||| | || Sbjct 2489 AACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAGCAGCGTTTGATC 2548 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 |||||||| |||||||| ||||||| || ||||| | ||||| || | || ||||| Sbjct 2549 TTTGCTGGCAAGCAACTTGAGGATGGCCGCACCCTCTCCGACTACAACATTCAGAAGGAG 2608 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| || || | || | |||||||||||||| Sbjct 2609 TCCACGCTCCACTTGGTTCTCCGTCTTCGCGGTGG 2643 Score = 145 bits (160), Expect = 9e-30 Identities = 155/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 27428 TTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGG 27487 ||||||||||||| || ||||| ||||| |||||| |||| ||| | || | ||| Sbjct 2153 TTACCGGCAAGACCATCACTCTCGAGGTCGAGTCATCCGATACCATCGACAACGTCAAGT 2212 Query 27488 CTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTA 27547 | || ||||| ||||||||||| ||||| || || ||||||||||| ||||| ||||| | Sbjct 2213 CCAAGATTCAAGACAAGGAGGGCATTCCCCCCGATCAGCAGCGTCTCATTTTCGCTGGCA 2272 Query 27548 AGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTC 27607 | || || ||||| | || ||||| | ||||| || |||| ||||| || || |||| Sbjct 2273 AACAGCTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCTACCCTTC 2332 Query 27608 ATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | || | || ||||| ||||| Sbjct 2333 ACTTGGTTCTCCGCCTTCGTGGTGG 2357 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| ||||| |||||||| || || || |||||||| || Sbjct 2645 ATGCAGATCTTCGTGAAGACTCTTACTGGCAAGACAATCACGCTCGAGGTTGAATCTTCA 2704 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||| | || || || || |||||||| || || || |||||| Sbjct 2705 GACACCATTGACAACGTTAAGTCGAAGATCCAAGATAAGGAGGGTATCCCCCCCGACCAG 2764 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || || || ||||| || ||||| | ||| || | | ||||| || Sbjct 2765 CAGCGCTTGATCTTCGCCGGAAAGCAGCTTGAGGACGGTCGCACGTTGTCGGACTACAAC 2824 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || ||||| ||| | ||||| || ||||| Sbjct 2825 ATCCAGAAGGAGTCTACCCTGCATCTTGTCCTCCGTCTGCGTGGTGG 2871 >seq766 Length=50960 Score = 114 bits (126), Expect = 1e-20 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || || ||||| || || || ||||| ||||| |||||||| ||||| || | || Sbjct 115 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCCGACACGATC 174 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||| | || || |||||||||||||| || || || ||||||||||| | Sbjct 175 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTTG 234 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || || ||||| ||||| |||||||| | || ||||| | ||||| || |||| ||| Sbjct 235 ATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAG 294 Query 27595 G 27595 | Sbjct 295 G 295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570297432567280