Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06-
15] 1,819 sequences; 35,034,269 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq1170 291 9e-74
seq866 185 1e-41
seq766 114 1e-20
>seq1170
Length=97779
Score = 291 bits (322), Expect = 9e-74
Identities = 1200/1872 (64%), Gaps = 84/1872 (4%)
Strand=Plus/Minus
Query 80031 TGCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTG 80090
|||| | || ||||| |||||||||||||||||||| || ||||||||| | |||
Sbjct 61042 TGCCTGAGTACGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCAGCGAAGTG 60983
Query 80091 CATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTG 80150
||| ||| ||| | | ||| |||| || |||| |||||| || ||||| |||||
Sbjct 60982 CATGCTGGTGATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTGAGGGACTGGGACTG 60923
Query 80151 ACAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCA 80210
||||| || |||||||| || ||||| | || || | || | ||||||||
Sbjct 60922 GTCAATGAAGGCACCACGATCGGCAGCCATCTGAACAACGGTGCGCTGGGAGATTTCCCA 60863
Query 80211 TACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCC 80267
|| || |||| |||| | ||| | || |||| | | | | | |
Sbjct 60862 GACGGTCTTGTACAGAGCCTTG---ACCTCGGCGGGGATGTTAGGGATGTTCTGAACGGA 60806
Query 80268 ACCGTCCTTTACAATTTGA---TTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAG 80324
||||| || | || | || |||| || | ||| | || | | | ||
Sbjct 60805 ACCGTTCTCGGCGATGATACGGTTCTTCATGGCATCGGACCACAAGCCCATGTCGACAAG 60746
Query 80325 ATCTTTCACAAG---GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAG 80381
||| |||| || | | ||| || | || |||| || ||||| || ||| |
Sbjct 60745 ATCCTTCAGCAGCCAGGGGTTGACAACCTGGA---ACTCGCCGGCGAGAACACGGCGCTG 60689
Query 80382 ATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCT 80441
|| | ||| | ||||| ||||| || ||||||||| || | |||||| | |||
Sbjct 60688 GTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGGGAAGTGGA 60629
Query 80442 CGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTC 80501
|| || ||||| || | || | || || || | ||||||| |||||| | |||
Sbjct 60628 GGCAGTAGGCATGGGAGCAACAAGCAAACTGTTGCGAACACCGTGCTCCTTGATTTGCTC 60569
Query 80502 GCGCAAA---TCTGA---CCAAAAATCAACCCCAACGCTGTGACC--CCACATGTCGTGC 80553
|| | || | ||| | ||| | ||| |||| ||||||||||| |
Sbjct 60568 CTTCAGAGAGTCCCAGTCCCAGAGGTCAG----AGGGCT-TGACATTCCACATGTCGTAC 60514
Query 80554 TGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTG 80613
|| | ||| |||| || || || ||| || |||| ||| | |||||| | ||
Sbjct 60513 TGAAGGATACCCTGGGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTACCCTCCTCCCTG 60454
Query 80614 GCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTC 80673
||||| | | ||| | || || ||||| || ||| |||||| | ||| ||
Sbjct 60453 GCCAGTTGAACGGACATGGTCAGAGCGGCGTGGTAGATGGTCTCAAAAATCTTCTTATTG 60394
Query 80674 ACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGG 80733
| | |||| |||| || ||||| | || || | | ||| | ||||| ||
Sbjct 60393 AGATCGCGAGCCTCAGGAGACTCGAAAGGCATGCGGAGGGCGAGGAAGGCATCAGCAAGA 60334
Query 80734 CCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCG-GCCTCCGGAAT 80792
||||| || || | |||| |||||||| ||| |||| | | || ||||| ||||
Sbjct 60333 CCCTGGACACCAAGACCGATGGGGCGGTGACGCATGTT-GCTGTTGCGAGCCTCAGGAAC 60275
Query 80793 TGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATC 80852
||||| ||| ||| |||| |||||||||||| ||| ||| | || || ||
Sbjct 60274 GGGGTAGTGGTTGACATCAATGATCTTGTTCAGGTTGCGAACAACGACCTGAGTGACCTC 60215
Query 80853 ATGAAGTTTCTGAAAGTCGAATTGGTTCCCCTTC------ACAAATGCCGGAAGGCTCAG 80906
||||| ||||| || ||| | | | || || || | || ||| ||
Sbjct 60214 GTGAAGCTTCTGGAAATCGTAAACACCCTCATTGTAGTCAACGAAGGTAGGCAGGGCAAG 60155
Query 80907 GGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCA 80966
|| |||| ||||| || || ||||| || | | |||| | || || |||||
Sbjct 60154 AGAGGCCAAGTTGCAGACAGCGACCTCATCGGGGGCGCAGTACTCAATAATCTCAGTGCA 60095
Query 80967 CAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTC 81026
| || || || || || ||||| || ||||| |||| ||| || ||
Sbjct 60094 GAGGTTGGAGCTGCGGATGGTTCCGAGGTTCTTTTGGTTGCTCTTGCGGTTCGCGGCATC 60035
Query 81027 CTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAAT 81086
|||||| |||| | ||| | |||||||| ||| | || ||||||||||| |||||
Sbjct 60034 CTTGTAAAGCATGAAGGGGTTGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTACCAAAG 59975
Query 81087 CTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCTTC 81146
|| | ||||||| |||||| ||||| ||| | | ||||| |||| |
Sbjct 59974 CTTCTGGGCCTTGATGGTCTTGCGACCCTTGCCCTCGCGCTCGTACTTTTCGTACAAGGC 59915
Query 81147 GTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGT 81205
|| |||| | |||| | ||| ||| ||| | ||||||||||| |||||||| |||
Sbjct 59914 CTCAAACTCCTCGCCGTAGCAGT-CAGCCAGGCCGGGGCACTCGTTGGGGCACATGAGGG 59856
Query 81206 GCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGA 81265
||| |||| || ||||| || ||||||||| || ||||||||||||||| ||
Sbjct 59855 TCCATTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGGGCGAGGA 59796
Query 81266 ACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCA 81325
| ||||| ||| || ||||||| | || ||||| |||||| || | || || |
Sbjct 59795 AAAGGTCACGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAACTCGA 59736
Query 81326 TGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC-----CCCTTGCGACGGC 81379
|| || || ||||| ||||| || || | ||||| | || | |||| ||
Sbjct 59735 AGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCACCAGGACGCTTG---TTGC 59679
Query 81380 CACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCAT 81439
||||||||| |||||| || ||||| ||| || ||||| | ||| || |||| || |
Sbjct 59678 CACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACGCCGT 59619
Query 81440 CTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCG--CACCTTGCTGATTGA 81497
|| ||||| || || | || || || |||| || || || |||
Sbjct 59618 TAGAGGTGCCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCACGGATACGGTGAGCGTTG- 59560
Query 81498 AAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAAT 81557
|| || |||||||| | | ||| || ||| || || || | ||| || || ||
Sbjct 59559 -AGGCCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGAT 59501
Query 81558 TCCCTCGATGCTATCTTTTTTCATGTC-------AAGCAAGAA-ACAGCTTGACATCTGA 81609
||||| ||| |||| |||||||| ||||| ||| ||||| || || ||||
Sbjct 59500 ACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGC-TGGCA-CTGA 59443
Query 81610 GGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGAC 81669
||| | ||||||||||| ||||| |||| ||||| |||| | | | |||
Sbjct 59442 GGG------GTACCGGCATTGAAAAGTGTGGGGGAGGCGTGTGTGAAGAACTTGCTGGAC 59389
Query 81670 ATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACA 81729
|| |||| ||||| || ||||||| || |||||| || ||||||| || |||
Sbjct 59388 ATGAGGTTGTAGGTCTCGATGACGCGCTCAACATCGTCGCCCCAGATACCGACTGCGACA 59329
Query 81730 CGCATAAACATGTACTGGGGCGTCTCG-----CCTGC----------GTTCAGGTA-CAT 81773
||||| | ||||| ||| || ||||| | ||| | |||||| ||
Sbjct 59328 CGCATGATCATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCGAGCTTGAGCAGGTATGAT 59269
Query 81774 CTTCTGCAAAGTCTTGATGCCGAAGTAACCGAACCCGTAGTCGCGTTCGCTGTCGATCAC 81833
| ||| || |||||||| ||||||||| | | | ||||||| ||| | |||| |
Sbjct 59268 C-TCTCCAGAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACGATGGC 59210
Query 81834 AGCATCTAGCTC 81845
|| ||||||||
Sbjct 59209 AGAGTCTAGCTC 59198
>seq866
Length=7889
Score = 185 bits (204), Expect = 1e-41
Identities = 181/231 (78%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || |||||| | || |||||||| ||||| | ||||| ||||||
Sbjct 2873 ATGCAGATCTTCGTGAAGACGTTGACTGGCAAGACGATTACCTTGGAGGTCGAGTCATCA 2932
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| || ||||| |||| |||||||| |||||||| || ||||| ||||||
Sbjct 2933 GACACGATTGACAACGTGAAGTCTAAGATTCAGGATAAGGAGGGTATCCCTCCCGACCAG 2992
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
|||||||| || || ||||| ||||| | || |||| ||| ||||| ||| ||||| ||
Sbjct 2993 CAGCGTCTTATCTTCGCTGGAAAGCAGTTGGAAGATGGTCGCACCCTGAGC-GACTACAA 3051
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635
|||| ||||||||||| |||||||| ||| | |||||||| || || ||
Sbjct 3052 CATCCAGAAGGAATCCACCCTTCATCTCGTCCTCCGTCTTCGTGGCGGCCA 3102
Score = 181 bits (200), Expect = 1e-40
Identities = 169/215 (79%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477
|||||||| || ||||||||||| || || |||||||| ||||| ||||| ||| |
Sbjct 2429 GTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCTTCTGATACCATCGAC 2488
Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537
|| | ||| | || ||||||||||||||||| |||||||| |||||||||||| | ||
Sbjct 2489 AACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAGCAGCGTTTGATC 2548
Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597
|||||||| |||||||| ||||||| || ||||| | ||||| || | || |||||
Sbjct 2549 TTTGCTGGCAAGCAACTTGAGGATGGCCGCACCCTCTCCGACTACAACATTCAGAAGGAG 2608
Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
||||| || || | || | ||||||||||||||
Sbjct 2609 TCCACGCTCCACTTGGTTCTCCGTCTTCGCGGTGG 2643
Score = 145 bits (160), Expect = 9e-30
Identities = 155/205 (76%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 27428 TTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGG 27487
||||||||||||| || ||||| ||||| |||||| |||| ||| | || | |||
Sbjct 2153 TTACCGGCAAGACCATCACTCTCGAGGTCGAGTCATCCGATACCATCGACAACGTCAAGT 2212
Query 27488 CTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTA 27547
| || ||||| ||||||||||| ||||| || || ||||||||||| ||||| ||||| |
Sbjct 2213 CCAAGATTCAAGACAAGGAGGGCATTCCCCCCGATCAGCAGCGTCTCATTTTCGCTGGCA 2272
Query 27548 AGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTC 27607
| || || ||||| | || ||||| | ||||| || |||| ||||| || || ||||
Sbjct 2273 AACAGCTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCTACCCTTC 2332
Query 27608 ATCTAGTCTTGCGTCTTCGCGGTGG 27632
| | || | || ||||| |||||
Sbjct 2333 ACTTGGTTCTCCGCCTTCGTGGTGG 2357
Score = 134 bits (148), Expect = 2e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || ||||| ||||| |||||||| || || || |||||||| ||
Sbjct 2645 ATGCAGATCTTCGTGAAGACTCTTACTGGCAAGACAATCACGCTCGAGGTTGAATCTTCA 2704
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| || | ||| | || || || || |||||||| || || || ||||||
Sbjct 2705 GACACCATTGACAACGTTAAGTCGAAGATCCAAGATAAGGAGGGTATCCCCCCCGACCAG 2764
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| | || || || || ||||| || ||||| | ||| || | | ||||| ||
Sbjct 2765 CAGCGCTTGATCTTCGCCGGAAAGCAGCTTGAGGACGGTCGCACGTTGTCGGACTACAAC 2824
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || || || ||||| ||| | ||||| || |||||
Sbjct 2825 ATCCAGAAGGAGTCTACCCTGCATCTTGTCCTCCGTCTGCGTGGTGG 2871
>seq766
Length=50960
Score = 114 bits (126), Expect = 1e-20
Identities = 134/181 (74%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474
|| || ||||| || || || ||||| ||||| |||||||| ||||| || | ||
Sbjct 115 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCCGACACGATC 174
Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534
| ||| | ||| | || || |||||||||||||| || || || ||||||||||| |
Sbjct 175 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTTG 234
Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594
|| || ||||| ||||| |||||||| | || ||||| | ||||| || |||| |||
Sbjct 235 ATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAG 294
Query 27595 G 27595
|
Sbjct 295 G 295
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570297432567280
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