Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06- 15] 1,819 sequences; 35,034,269 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq866 120 3e-22 >seq866 Length=7889 Score = 120 bits (132), Expect = 3e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071 ||||||||| | || ||||| || || || | ||||| | || || | ||||| Sbjct 2155 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCATCCGATACCATCGACAACGTCAAGTCC 2214 Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || ||||||||||| || ||||| || |||||||| |||||| | || | ||| |||||| Sbjct 2215 AAGATTCAAGACAAGGAGGGCATTCCCCCCGATCAGCAGCGTCTCATTTTCGCTGGCAAA 2274 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 || | || ||| | ||| | ||||| |||||||| || |||||||| ||| | || Sbjct 2275 CAGCTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCTACCCTTCAC 2334 Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| | || | || ||||| || Sbjct 2335 TTGGTTCTCCGCCTTCGTGGTGGTAT 2360 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27000 GTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAG 27059 || || || || ||||||||| | || || ||||| || || | || || | || || Sbjct 2429 GTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCTTCTGATACCATCGAC 2488 Query 27060 ATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATA 27119 | ||||| || ||||| ||||| || ||||| || || || || |||||||| || Sbjct 2489 AACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAGCAGCGTTTGATC 2548 Query 27120 TACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAG 27179 | || ||||| ||| | || || | ||| | ||||| ||||||||||| |||||| Sbjct 2549 TTTGCTGGCAAGCAACTTGAGGATGGCCGCACCCTCTCCGACTACAACATTCAGAAGGAG 2608 Query 27180 TCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || | || |||||| | ||| | || ||||| || Sbjct 2609 TCCACGCTCCACTTGGTTCTCCGTCTTCGCGGTGGTAT 2646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434908511042880