Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06-
15] 1,819 sequences; 35,034,269 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq866 120 3e-22
>seq866
Length=7889
Score = 120 bits (132), Expect = 3e-22
Identities = 150/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071
||||||||| | || ||||| || || || | ||||| | || || | |||||
Sbjct 2155 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCATCCGATACCATCGACAACGTCAAGTCC 2214
Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131
|| ||||||||||| || ||||| || |||||||| |||||| | || | ||| ||||||
Sbjct 2215 AAGATTCAAGACAAGGAGGGCATTCCCCCCGATCAGCAGCGTCTCATTTTCGCTGGCAAA 2274
Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191
|| | || ||| | ||| | ||||| |||||||| || |||||||| ||| | ||
Sbjct 2275 CAGCTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCTACCCTTCAC 2334
Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|||||| | || | || ||||| ||
Sbjct 2335 TTGGTTCTCCGCCTTCGTGGTGGTAT 2360
Score = 105 bits (116), Expect = 6e-18
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 27000 GTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAG 27059
|| || || || ||||||||| | || || ||||| || || | || || | || ||
Sbjct 2429 GTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCTTCTGATACCATCGAC 2488
Query 27060 ATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATA 27119
| ||||| || ||||| ||||| || ||||| || || || || |||||||| ||
Sbjct 2489 AACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAGCAGCGTTTGATC 2548
Query 27120 TACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAG 27179
| || ||||| ||| | || || | ||| | ||||| ||||||||||| ||||||
Sbjct 2549 TTTGCTGGCAAGCAACTTGAGGATGGCCGCACCCTCTCCGACTACAACATTCAGAAGGAG 2608
Query 27180 TCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || | || |||||| | ||| | || ||||| ||
Sbjct 2609 TCCACGCTCCACTTGGTTCTCCGTCTTCGCGGTGGTAT 2646
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434908511042880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |