Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06- 15] 1,819 sequences; 35,034,269 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq415 93.3 4e-14 >seq415 Length=23879 Score = 93.3 bits (102), Expect = 4e-14 Identities = 207/303 (68%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 6724 CGCGACGTAGAATTG-GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCT 6782 || ||||||||| || ||| | |||||||||| ||||| |||||| ||| ||| Sbjct 2563 CGAGACGTAGAACTGCGCAAACA-TGTGGCACGGTGGGAGGGCCATCTTCTTGAGGTCCG 2621 Query 6783 TCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGA 6842 ||||||||||||| | | || | | ||| | |||||| ||| | ||| || Sbjct 2622 CTGGGTTCCACGCGCTGAGGAGAATGCGGCGGTCGTAGGGGTTCGTCTTGAGCTTGTGGA 2681 Query 6843 TCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATAC 6901 | || | || ||||| | || || |||| || |||| ||| | | || ||| Sbjct 2682 TGACCTCGGCCAATTGGTCGACGCCTTGGCCCGTGTAATCCGTCTTGGAGTCGACG-TAC 2740 Query 6902 TCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGA 6961 || || |||||||| | ||| ||||| |||||||| ||||| | |||||| | || || Sbjct 2741 TCAGCGCCAAAGTGGCGCCATTGGAAGCCGTAGACGGGGCCGAGGTCGCCGACTTCGCGG 2800 Query 6962 GATGGGA-ACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCAC 7020 || || || ||| |||| || || || || || |||| |||||||||| || || Sbjct 2801 TGTGAGAGGCCGACGC-TGTCGAGGAACTCGCGCGATCCGTTGCCGTCCCAGATTTTGAC 2859 Query 7021 CCC 7023 || Sbjct 2860 GCC 2862 Score = 93.3 bits (102), Expect = 4e-14 Identities = 207/303 (68%), Gaps = 6/303 (2%) Strand=Plus/Minus Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGT-TCCC 34380 || || || |||||||||| |||| || || || || || |||| ||| || || | Sbjct 2862 GGCGTCAAAATCTGGGACGGCAACGGATCGCGCGAGTTCCTCGACA-GCGTCGGCCTCTC 2804 Query 34381 ATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGC 34440 | || || | |||||| | ||||| |||||||| ||||| ||| | |||||||| || Sbjct 2803 ACACCGCGAAGTCGGCGACCTCGGCCCCGTCTACGGCTTCCAATGGCGCCACTTTGGCGC 2744 Query 34441 GGAGTATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACG 34499 ||||| || | | ||| |||| || |||| || || | ||||| || | | Sbjct 2743 TGAGTA-CGTCGACTCCAAGACGGATTACACGGGCCAAGGCGTCGACCAATTGGCCGAGG 2685 Query 34500 TGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACC 34559 | ||| ||| | ||| |||||| | ||| | | || | | |||||||||||| Sbjct 2684 TCATCCACAAGCTCAAGACGAACCCCTACGACCGCCGCATTCTCCTCAGCGCGTGGAACC 2625 Query 34560 CGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTACGTC 34618 | ||| ||| |||||| ||||| |||||||||| | ||| || ||||||||| Sbjct 2624 CAGCGGACCTCAAGAAGATGGCCCTCCCACCGTGCCACA-TGTTTGCGCAGTTCTACGTC 2566 Query 34619 GCG 34621 || Sbjct 2565 TCG 2563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448252207633680