Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06-
15] 1,819 sequences; 35,034,269 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq415 93.3 4e-14
>seq415
Length=23879
Score = 93.3 bits (102), Expect = 4e-14
Identities = 207/303 (68%), Gaps = 6/303 (2%)
Strand=Plus/Plus
Query 6724 CGCGACGTAGAATTG-GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCT 6782
|| ||||||||| || ||| | |||||||||| ||||| |||||| ||| |||
Sbjct 2563 CGAGACGTAGAACTGCGCAAACA-TGTGGCACGGTGGGAGGGCCATCTTCTTGAGGTCCG 2621
Query 6783 TCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGA 6842
||||||||||||| | | || | | ||| | |||||| ||| | ||| ||
Sbjct 2622 CTGGGTTCCACGCGCTGAGGAGAATGCGGCGGTCGTAGGGGTTCGTCTTGAGCTTGTGGA 2681
Query 6843 TCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATAC 6901
| || | || ||||| | || || |||| || |||| ||| | | || |||
Sbjct 2682 TGACCTCGGCCAATTGGTCGACGCCTTGGCCCGTGTAATCCGTCTTGGAGTCGACG-TAC 2740
Query 6902 TCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGA 6961
|| || |||||||| | ||| ||||| |||||||| ||||| | |||||| | || ||
Sbjct 2741 TCAGCGCCAAAGTGGCGCCATTGGAAGCCGTAGACGGGGCCGAGGTCGCCGACTTCGCGG 2800
Query 6962 GATGGGA-ACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCAC 7020
|| || || ||| |||| || || || || || |||| |||||||||| || ||
Sbjct 2801 TGTGAGAGGCCGACGC-TGTCGAGGAACTCGCGCGATCCGTTGCCGTCCCAGATTTTGAC 2859
Query 7021 CCC 7023
||
Sbjct 2860 GCC 2862
Score = 93.3 bits (102), Expect = 4e-14
Identities = 207/303 (68%), Gaps = 6/303 (2%)
Strand=Plus/Minus
Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGT-TCCC 34380
|| || || |||||||||| |||| || || || || || |||| ||| || || |
Sbjct 2862 GGCGTCAAAATCTGGGACGGCAACGGATCGCGCGAGTTCCTCGACA-GCGTCGGCCTCTC 2804
Query 34381 ATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGC 34440
| || || | |||||| | ||||| |||||||| ||||| ||| | |||||||| ||
Sbjct 2803 ACACCGCGAAGTCGGCGACCTCGGCCCCGTCTACGGCTTCCAATGGCGCCACTTTGGCGC 2744
Query 34441 GGAGTATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACG 34499
||||| || | | ||| |||| || |||| || || | ||||| || | |
Sbjct 2743 TGAGTA-CGTCGACTCCAAGACGGATTACACGGGCCAAGGCGTCGACCAATTGGCCGAGG 2685
Query 34500 TGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACC 34559
| ||| ||| | ||| |||||| | ||| | | || | | ||||||||||||
Sbjct 2684 TCATCCACAAGCTCAAGACGAACCCCTACGACCGCCGCATTCTCCTCAGCGCGTGGAACC 2625
Query 34560 CGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTACGTC 34618
| ||| ||| |||||| ||||| |||||||||| | ||| || |||||||||
Sbjct 2624 CAGCGGACCTCAAGAAGATGGCCCTCCCACCGTGCCACA-TGTTTGCGCAGTTCTACGTC 2566
Query 34619 GCG 34621
||
Sbjct 2565 TCG 2563
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448252207633680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |