Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06- 15] 1,819 sequences; 35,034,269 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq866 149 1e-30 seq766 120 7e-22 seq1170 104 5e-17 >seq866 Length=7889 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || || || ||||| || |||||||| || |||| | || | || || Sbjct 2856 AGGACAAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAACGTGCGACCGTCC 2797 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| | ||| || ||||| || || | || ||||| || Sbjct 2796 TCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATACCCTCCTTATCT 2737 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| || |||||||| || |||||||||||| ||||| ||| Sbjct 2736 TGGATCTTCGACTTAACGTTGTCAATGGTGTCTGAAGATTCAACCTCGAGCGTGATTGTC 2677 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| || || | |||||| Sbjct 2676 TTGCCAGTAAGAGTCTTCACGAAGATCTGCAT 2645 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || | ||| || |||||||| || || ||||| || || | ||||| Sbjct 2637 CGAAGACGGAGAACCAAGTGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTG 2578 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||| || || |||||||| || ||||| | || || ||||||||||||| || Sbjct 2577 CGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGAGGAATGCCC 2518 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||| ||||| || ||||| |||||||| ||||| || ||||| || Sbjct 2517 TCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTATCAGAAGACTCGACCTCAAGG 2458 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102 ||||| ||||| || ||||| ||||| || Sbjct 2457 GTGATGGTCTTGCCGGTGAGGGTCTTGAC 2429 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| || ||||| ||||| || || |||||||| || || ||||| Sbjct 3094 ACGAAGACGGAGGACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTCAGGGT 3035 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| |||||| || ||||||||||| || || ||||| ||||| | || Sbjct 3034 GCGACCATCTTCCAACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACC 2975 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||| ||||| ||||| |||||||| || || ||||| || || ||||| | Sbjct 2974 CTCCTTATCCTGAATCTTAGACTTCACGTTGTCAATCGTGTCTGATGACTCGACCTCCAA 2915 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| || || | ||||| || || | |||||| Sbjct 2914 GGTAATCGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 2873 Score = 123 bits (136), Expect = 6e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | |||||| || ||||| || |||||||| || || | ||||| Sbjct 2352 ACGAAGGCGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGT 2293 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || ||||| ||||| ||||| || || || || || || || |||| || Sbjct 2292 GCGGCCGTCCTCAAGCTGTTTGCCAGCGAAAATGAGACGCTGCTGATCGGGGGGAATGCC 2233 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||| || ||||| || ||||| |||||||| || || || |||||||| Sbjct 2232 CTCCTTGTCTTGAATCTTGGACTTGACGTTGTCGATGGTATCGGATGACTCGACCTCGAG 2173 Query 211073 AGTGATCGTCTTTCCCGT 211090 |||||| ||||| || || Sbjct 2172 AGTGATGGTCTTGCCGGT 2155 >seq766 Length=50960 Score = 120 bits (132), Expect = 7e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | ||||| | || || || ||||||||||| |||||||| Sbjct 293 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATC 234 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | ||| || ||||| || || | || ||||||||||||||||| || || || ||| Sbjct 233 AAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 174 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || ||||| ||| || ||||| || || || ||||| ||||| || ||||| || || Sbjct 173 ATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 115 >seq1170 Length=97779 Score = 104 bits (114), Expect = 5e-17 Identities = 192/282 (68%), Gaps = 0/282 (0%) Strand=Plus/Minus Query 178086 TTCCAAAGTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCA 178145 |||| | |||||||||||||||||| | | |||||| ||||| |||||||| Sbjct 60074 TTCCGAGGTTCTTTTGGTTGCTCTTGCGGTTCGCGGCATCCTTGTAAAGCATGAAGGGGT 60015 Query 178146 TTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCT 178205 | || ||||| |||||| |||| ||| | |||||||| |||||| || |||| Sbjct 60014 TGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTACCAAAGCTTCTGGGCCTTGATGGTCT 59955 Query 178206 TTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGA 178265 | | || || || ||||||||||| ||| | |||| || ||| || ||| Sbjct 59954 TGCGACCCTTGCCCTCGCGCTCGTACTTTTCGTACAAGGCCTCAAACTCCTCGCCGTAGC 59895 Query 178266 CATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCA 178325 ||| | || ||||| ||| |||||||| | ||| |||| | ||| | || | Sbjct 59894 AGTCAGCCAGGCCGGGGCACTCGTTGGGGCACATGAGGGTCCATTCGGCGTTCTTCTCGA 59835 Query 178326 CTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAA 178367 ||| |||||||| || || | | |||||| ||| ||||| Sbjct 59834 CTCTCTTCATGAACAGATCGGGGATCCAGAGGGCGAGGAAAA 59793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159124984875935