Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06- 15] 1,819 sequences; 35,034,269 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq866 149 1e-30 seq766 102 2e-16 seq1170 86.0 1e-11 >seq866 Length=7889 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| || || || |||||||| || |||| ||||| ||| || || Sbjct 3094 ACGAAGACGGAGGACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTCAGGGT 3035 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | |||||| |||||||||||||| || || |||||||| || ||||| Sbjct 3034 GCGACCATCTTCCAACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACC 2975 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| || || ||||| |||||| || || |||||||| | || || || || Sbjct 2974 CTCCTTATCCTGAATCTTAGACTTCACGTTGTCAATCGTGTCTGATGACTCGACCTCCAA 2915 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||||||||| ||||| || || | ||| | ||||| Sbjct 2914 GGTAATCGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 2873 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||| || || || || || || |||| ||||| || | ||| || | || || Sbjct 2856 AGGACAAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAACGTGCGACCGTCC 2797 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| | || || |||||||| || ||||| ||||| ||| Sbjct 2796 TCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATACCCTCCTTATCT 2737 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || || ||||||||||| | ||| || || | |||||| ||| Sbjct 2736 TGGATCTTCGACTTAACGTTGTCAATGGTGTCTGAAGATTCAACCTCGAGCGTGATTGTC 2677 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | ||| || | ||| | ||||| Sbjct 2676 TTGCCAGTAAGAGTCTTCACGAAGATCTGCAT 2645 Score = 100 bits (110), Expect = 7e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| || || || || || |||| ||||| |||| | || Sbjct 2352 ACGAAGGCGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGT 2293 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || ||||| || |||||||| || || || || || ||||| ||||| || Sbjct 2292 GCGGCCGTCCTCAAGCTGTTTGCCAGCGAAAATGAGACGCTGCTGATCGGGGGGAATGCC 2233 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||| ||||| ||| || |||||||| || || | || || || | Sbjct 2232 CTCCTTGTCTTGAATCTTGGACTTGACGTTGTCGATGGTATCGGATGACTCGACCTCGAG 2173 Query 225672 CGTGATCGTCTTGCCCGT 225689 ||||| |||||||| || Sbjct 2172 AGTGATGGTCTTGCCGGT 2155 >seq766 Length=50960 Score = 102 bits (112), Expect = 2e-16 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| |||| | || | || || || |||||||| ||||||||||| Sbjct 293 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATC 234 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 | || || |||||||| || || || |||||||| |||||||| ||| ||| ||| Sbjct 233 AAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 174 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 || ||||| |||| || || || | || || ||||| ||||||| || || | ||| Sbjct 173 ATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 115 >seq1170 Length=97779 Score = 86.0 bits (94), Expect = 1e-11 Identities = 182/272 (67%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 193500 TTCTGGTTGTTCTTTCGACAGATGGCGTCTTTGTAGACGATGAAGGGCATGCCCACCTCC 193559 || |||||| |||| || ||| || ||||| | |||||||| |||| ||| Sbjct 60063 TTTTGGTTGCTCTTGCGGTTCGCGGCATCCTTGTAAAGCATGAAGGGGTTGCCGGTCTCA 60004 Query 193560 GCTTGAGCGACGAGAATGTGATGCCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTT 193619 | ||||| |||| ||| | |||||| | || || || | ||| | | |||| Sbjct 60003 GTCTGAGCCTCGAGGATGGCGTACCAAAGCTTCTGGGCCTTGATGGTCTTGCGACCCTTG 59944 Query 193620 CCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGA 193679 || || | ||||||||||||||||| ||||||| || | |||||| || | || Sbjct 59943 CCCTCGCGCTCGTACTTTTCGTACAAGGCCTCAAACTCCTCGCCGTAGCAGTCAGCCAGG 59884 Query 193680 CCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCATG 193739 ||||| || || ||||| | ||| |||| || | | | || || ||||||||| Sbjct 59883 CCGGGGCACTCGTTGGGGCACATGAGGGTCCATTCGGCGTTCTTCTCGACTCTCTTCATG 59824 Query 193740 AAGAGGTCAGATGTCCAAATGGCGTAGAAAAG 193771 || || || | |||| | |||| |||||| Sbjct 59823 AACAGATCGGGGATCCAGAGGGCGAGGAAAAG 59792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192503406942386