Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06-
15] 1,819 sequences; 35,034,269 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq866 149 1e-30
seq766 102 2e-16
seq1170 86.0 1e-11
>seq866
Length=7889
Score = 149 bits (164), Expect = 1e-30
Identities = 166/222 (75%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | ||||| || || || |||||||| || |||| ||||| ||| || ||
Sbjct 3094 ACGAAGACGGAGGACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTCAGGGT 3035
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| |||||||| | |||||| |||||||||||||| || || |||||||| || |||||
Sbjct 3034 GCGACCATCTTCCAACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACC 2975
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||| || || ||||| |||||| || || |||||||| | || || || ||
Sbjct 2974 CTCCTTATCCTGAATCTTAGACTTCACGTTGTCAATCGTGTCTGATGACTCGACCTCCAA 2915
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| ||||||||||| ||||| || || | ||| | |||||
Sbjct 2914 GGTAATCGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 2873
Score = 134 bits (148), Expect = 3e-26
Identities = 157/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|||||||| || || || || || || |||| ||||| || | ||| || | || ||
Sbjct 2856 AGGACAAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAACGTGCGACCGTCC 2797
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| || |||||||| | || || |||||||| || ||||| ||||| |||
Sbjct 2796 TCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATACCCTCCTTATCT 2737
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| || || ||||||||||| | ||| || || | |||||| |||
Sbjct 2736 TGGATCTTCGACTTAACGTTGTCAATGGTGTCTGAAGATTCAACCTCGAGCGTGATTGTC 2677
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || | ||| || | ||| | |||||
Sbjct 2676 TTGCCAGTAAGAGTCTTCACGAAGATCTGCAT 2645
Score = 100 bits (110), Expect = 7e-16
Identities = 141/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | || || | ||| || || || || || |||| ||||| |||| | ||
Sbjct 2352 ACGAAGGCGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGT 2293
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || || || ||||| || |||||||| || || || || || ||||| ||||| ||
Sbjct 2292 GCGGCCGTCCTCAAGCTGTTTGCCAGCGAAAATGAGACGCTGCTGATCGGGGGGAATGCC 2233
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||||||||| ||||| ||| || |||||||| || || | || || || |
Sbjct 2232 CTCCTTGTCTTGAATCTTGGACTTGACGTTGTCGATGGTATCGGATGACTCGACCTCGAG 2173
Query 225672 CGTGATCGTCTTGCCCGT 225689
||||| |||||||| ||
Sbjct 2172 AGTGATGGTCTTGCCGGT 2155
>seq766
Length=50960
Score = 102 bits (112), Expect = 2e-16
Identities = 130/179 (73%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585
|| |||| ||||| |||| | || | || || || |||||||| |||||||||||
Sbjct 293 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATC 234
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645
| || || |||||||| || || || |||||||| |||||||| ||| ||| |||
Sbjct 233 AAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 174
Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704
|| ||||| |||| || || || | || || ||||| ||||||| || || | |||
Sbjct 173 ATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 115
>seq1170
Length=97779
Score = 86.0 bits (94), Expect = 1e-11
Identities = 182/272 (67%), Gaps = 0/272 (0%)
Strand=Plus/Minus
Query 193500 TTCTGGTTGTTCTTTCGACAGATGGCGTCTTTGTAGACGATGAAGGGCATGCCCACCTCC 193559
|| |||||| |||| || ||| || ||||| | |||||||| |||| |||
Sbjct 60063 TTTTGGTTGCTCTTGCGGTTCGCGGCATCCTTGTAAAGCATGAAGGGGTTGCCGGTCTCA 60004
Query 193560 GCTTGAGCGACGAGAATGTGATGCCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTT 193619
| ||||| |||| ||| | |||||| | || || || | ||| | | ||||
Sbjct 60003 GTCTGAGCCTCGAGGATGGCGTACCAAAGCTTCTGGGCCTTGATGGTCTTGCGACCCTTG 59944
Query 193620 CCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGA 193679
|| || | ||||||||||||||||| ||||||| || | |||||| || | ||
Sbjct 59943 CCCTCGCGCTCGTACTTTTCGTACAAGGCCTCAAACTCCTCGCCGTAGCAGTCAGCCAGG 59884
Query 193680 CCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCATG 193739
||||| || || ||||| | ||| |||| || | | | || || |||||||||
Sbjct 59883 CCGGGGCACTCGTTGGGGCACATGAGGGTCCATTCGGCGTTCTTCTCGACTCTCTTCATG 59824
Query 193740 AAGAGGTCAGATGTCCAAATGGCGTAGAAAAG 193771
|| || || | |||| | |||| ||||||
Sbjct 59823 AACAGATCGGGGATCCAGAGGGCGAGGAAAAG 59792
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192503406942386
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |